Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 9.2e-267 922.9 449 100.0
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 1.3e-260 902.5 449 97.8
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 3.8e-260 901.0 449 97.6
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 3.8e-260 901.0 449 97.6
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 3.6e-255 884.4 449 97.1
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 1.6e-247 859.0 451 93.3
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 2.4e-238 828.6 448 89.5
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 1.5e-229 799.3 448 87.3
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 1.4e-225 786.2 448 85.7
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 3.0e-225 785.0 448 85.0
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 2.5e-224 781.9 448 84.6
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 6.5e-220 767.3 448 82.6
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 4.8e-215 751.1 516 72.5
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 2.7e-202 708.8 448 77.7
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 1.4e-190 669.8 448 69.9
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 2.7e-189 665.6 449 69.7
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 1.5e-187 659.8 451 69.8
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 5.5e-187 657.9 449 69.9
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 5.7e-184 647.9 449 68.4
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 2.2e-183 646.0 449 67.9
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 3.7e-183 645.2 453 67.3
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 4.9e-183 644.8 449 67.9
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 2.4e-182 642.5 495 64.8
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 2.0e-181 639.4 461 66.2
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 1.3e-180 636.7 465 65.8
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 3.3e-179 632.1 451 68.5
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 7.3e-179 630.9 456 66.9
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 1.0e-177 627.1 449 67.0
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 1.8e-177 626.3 452 67.3
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 3.0e-177 625.5 451 67.2
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 4.0e-177 625.2 455 67.9
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 8.9e-177 624.0 453 66.2
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 1.5e-176 623.2 452 66.8
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 9.8e-176 620.5 452 67.3
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 1.3e-175 620.2 456 65.8
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 9.2e-174 614.0 449 65.7
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 1.2e-173 613.6 455 65.7
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 2.3e-172 609.4 466 63.7
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 1.9e-171 606.3 487 61.6
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 4.3e-171 605.1 477 61.4
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 1.6e-170 603.2 451 64.7
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 4.7e-170 601.7 449 63.9
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 2.3e-169 599.4 453 64.2
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 4.0e-169 598.6 455 63.3
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 5.2e-169 598.2 459 63.6
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 8.9e-169 597.4 451 65.0
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 3.7e-167 592.0 464 62.5
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 3.7e-167 592.0 453 63.1
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 6.4e-167 591.3 449 63.7
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 1.0e-164 583.9 453 63.1
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 3.0e-164 582.4 460 61.7
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 1.5e-163 580.1 460 62.6
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 1.5e-163 580.1 416 67.8
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 1.9e-163 579.7 453 62.9
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 2.5e-163 579.3 453 61.8
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 5.6e-163 578.2 450 63.3
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 2.6e-160 569.3 451 62.5
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 5.8e-160 568.2 449 62.4
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 4.9e-159 565.1 544 55.1
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 2.4e-158 562.8 454 59.5
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 4.1e-158 562.0 434 63.1
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 1.6e-157 560.1 450 60.2
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 3.5e-157 558.9 450 62.9
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.7e-156 556.6 453 60.0
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 5.1e-156 555.1 450 59.8
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.1e-155 553.9 453 59.4
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.5e-155 553.5 546 53.3
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 1.5e-155 553.5 450 59.6
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.6e-154 550.1 434 62.7
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 6.4e-151 538.1 437 61.6
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.4e-150 536.2 465 59.6
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 1.6e-149 533.5 445 59.6
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 6.6e-148 528.1 469 55.4
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 3.6e-146 522.3 408 64.0
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 7.6e-144 514.6 435 58.9
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 2.5e-139 499.6 451 58.3
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 9.6e-139 497.7 487 53.6
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 4.5e-136 488.8 341 67.2
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 4.5e-136 488.8 408 60.5
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 2.2e-127 459.9 480 50.2
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 6.4e-127 458.4 359 64.1
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 2.1e-125 453.4 473 51.8
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 4.6e-125 452.2 412 57.3
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 7.9e-125 451.4 484 47.5
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 2.0e-112 410.2 399 55.9
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.5e-110 403.3 462 45.0
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.5e-110 403.3 462 45.0
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 7.9e-109 398.3 467 42.6
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 1.5e-104 384.0 306 62.7
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 2.0e-104 383.6 430 50.0
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 3.0e-100 369.8 431 47.8
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 5.1e-100 369.0 208 79.8
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 4.4e-91 339.3 213 71.8
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 1.3e-90 337.8 196 77.0
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.8e-90 336.7 298 55.4
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 4.1e-89 332.8 340 50.6
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 1.6e-88 330.9 196 76.5
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 2.9e-87 326.6 198 75.3
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 9.4e-86 321.6 184 79.3
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.7e-85 320.1 264 59.1
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.3e-76 290.4 235 54.9
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 4.4e-75 286.2 251 58.2
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 3.5e-72 276.6 230 58.3
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.5e-70 270.4 242 56.2
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 6.1e-69 265.8 168 69.6
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 6.8e-68 262.3 250 54.4
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 1.5e-67 261.2 263 54.4
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 3.5e-64 250.0 153 75.2
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 4.5e-64 249.6 203 58.1
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.3e-63 248.1 234 51.3
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 1.7e-58 231.1 131 77.1
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.0e-56 224.2 208 54.3
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.9e-54 217.6 213 52.1
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 1.2e-51 208.4 170 60.0
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 7.1e-49 199.1 181 55.8
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 1.6e-48 198.0 346 33.8
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 1.7e-47 194.5 191 52.4
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 3.9e-39 166.8 97 76.3
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 1.8e-36 157.9 283 32.9
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 1.5e-35 154.8 278 37.8
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 5.8e-35 152.9 85 74.1
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 1.7e-31 141.4 245 40.0
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 4.8e-29 133.3 407 27.0
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.6e-27 127.5 76 72.4
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 6.0e-24 116.3 70 68.6
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 2.5e-14 84.3 49 77.6
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 8.1e-13 79.3 52 69.2
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.8e-12 78.2 91 45.1
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 2.7e-08 64.3 356 21.9


User provided reference genes

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