Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 9.9e-86 320.1 163 100.0
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 1.5e-81 306.2 164 96.3
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 1.3e-61 240.0 183 72.1
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 1.5e-49 199.9 146 76.0
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 4.4e-49 198.4 146 76.0
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 4.4e-49 198.4 146 76.0
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 3.7e-48 195.3 164 68.3
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 3.7e-48 195.3 164 67.7
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 8.2e-48 194.1 164 67.7
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 8.2e-48 194.1 164 67.7
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 8.2e-48 194.1 164 67.7
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 1.8e-47 193.0 164 67.1
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 1.8e-47 193.0 164 67.1
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 1.8e-47 193.0 164 67.1
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 1.8e-47 193.0 164 67.7
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 1.8e-47 193.0 164 67.1
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 2.4e-47 192.6 164 67.1
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 2.4e-47 192.6 164 67.1
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 4.1e-47 191.8 164 65.9
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 7.0e-47 191.0 164 67.1
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 5.9e-46 188.0 164 65.9
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 1.7e-45 186.4 164 65.2
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 2.2e-45 186.0 164 64.6
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 8.5e-45 184.1 164 64.6
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.5e-44 183.3 164 62.8
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 1.5e-44 183.3 164 62.2
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 1.5e-44 183.3 164 62.2
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 1.5e-44 183.3 164 62.2
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.9e-44 183.0 164 62.2
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 1.9e-44 183.0 164 62.8
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 2.5e-44 182.6 164 61.6
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.5e-44 182.6 164 61.6
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.5e-44 182.6 164 62.2
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 2.5e-44 182.6 164 62.2
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 2.5e-44 182.6 164 62.2
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.2e-44 182.2 164 61.0
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 3.2e-44 182.2 164 61.0
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 4.2e-44 181.8 164 60.4
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 4.2e-44 181.8 164 62.2
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 4.2e-44 181.8 164 61.6
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 4.2e-44 181.8 164 61.6
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 5.5e-44 181.4 164 61.6
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 5.5e-44 181.4 164 62.2
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 5.5e-44 181.4 164 62.2
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 7.2e-44 181.0 164 61.6
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 7.2e-44 181.0 164 60.4
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 7.2e-44 181.0 164 60.4
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 1.2e-43 180.3 164 60.4
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.2e-43 180.3 164 61.6
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 1.2e-43 180.3 164 61.0
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 1.2e-43 180.3 164 61.6
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 1.6e-43 179.9 164 61.6
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 1.6e-43 179.9 164 59.1
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 1.6e-43 179.9 164 60.4
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 2.1e-43 179.5 164 61.6
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 2.1e-43 179.5 164 60.4
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 2.1e-43 179.5 164 61.0
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 2.1e-43 179.5 164 60.4
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.7e-43 179.1 164 61.0
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.7e-43 179.1 164 60.4
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 2.7e-43 179.1 164 61.0
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 3.6e-43 178.7 164 61.0
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 3.6e-43 178.7 164 60.4
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 4.7e-43 178.3 164 61.0
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 4.7e-43 178.3 164 60.4
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.7e-43 178.3 164 61.0
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 4.7e-43 178.3 164 60.4
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 4.7e-43 178.3 165 62.4
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 4.7e-43 178.3 164 61.6
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 6.1e-43 177.9 164 59.8
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 6.1e-43 177.9 164 59.8
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 6.1e-43 177.9 164 59.8
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 6.1e-43 177.9 164 58.5
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 8.0e-43 177.6 164 60.4
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 8.0e-43 177.6 164 59.8
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 1.4e-42 176.8 164 59.8
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 1.4e-42 176.8 164 59.8
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 1.8e-42 176.4 164 59.1
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.8e-42 176.4 165 61.2
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 1.8e-42 176.4 164 60.4
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.8e-42 176.4 164 59.1
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 2.3e-42 176.0 164 59.8
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.3e-42 176.0 164 60.4
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 2.3e-42 176.0 164 59.1
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 3.0e-42 175.6 164 59.1
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 4.0e-42 175.3 164 60.4
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 5.2e-42 174.9 164 58.5
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 5.2e-42 174.9 164 59.8
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 5.2e-42 174.9 164 59.1
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 6.8e-42 174.5 164 59.1
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 6.8e-42 174.5 164 58.5
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 8.8e-42 174.1 164 58.5
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 8.8e-42 174.1 164 58.5
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 8.8e-42 174.1 164 61.0
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 1.2e-41 173.7 164 57.9
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.2e-41 173.7 165 60.6
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 1.2e-41 173.7 164 59.1
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 1.2e-41 173.7 164 59.1
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 1.2e-41 173.7 164 58.5
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.5e-41 173.3 172 57.0
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.5e-41 173.3 172 57.0
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 2.0e-41 172.9 164 57.9
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 2.0e-41 172.9 164 58.5
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 3.4e-41 172.2 171 59.1
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 4.4e-41 171.8 164 58.5
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 4.4e-41 171.8 164 60.4
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 5.7e-41 171.4 164 56.7
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 5.7e-41 171.4 164 58.5
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 5.7e-41 171.4 164 58.5
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 1.3e-40 170.2 164 57.9
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 1.7e-40 169.9 164 59.1
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 4.8e-40 168.3 164 58.5
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 4.8e-40 168.3 164 57.3
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 4.8e-40 168.3 164 57.3
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.1e-39 167.2 164 58.5
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 1.8e-39 166.4 192 52.6
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 2.4e-39 166.0 185 53.5
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 3.1e-39 165.6 164 55.5
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 3.1e-39 165.6 164 57.9
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 5.3e-39 164.9 164 57.9
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 1.6e-38 163.3 164 56.7
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.0e-38 162.9 164 56.7
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 2.7e-38 162.5 164 56.7
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 3.5e-38 162.2 158 57.0
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 1.0e-37 160.6 151 60.3
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 1.3e-37 160.2 153 58.2
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 1.3e-37 160.2 183 52.5
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 2.2e-37 159.5 164 54.3
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 5.0e-37 158.3 164 54.3
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 1.1e-36 157.1 164 53.7
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 1.5e-36 156.8 164 54.3
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 2.1e-35 152.9 164 51.8
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.0e-34 149.1 164 51.2
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 6.8e-34 147.9 164 51.2
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 7.5e-33 144.4 205 45.4
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 8.3e-32 141.0 164 50.0
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.1e-31 139.0 164 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.7e-30 136.0 164 48.2
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 1.7e-29 133.3 74 91.9
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 8.0e-27 124.4 164 45.7
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 5.2e-26 121.7 164 45.1
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 2.2e-24 116.3 74 78.4
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 4.9e-24 115.2 169 41.4
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 4.1e-23 112.1 74 73.0
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 7.0e-23 111.3 69 78.3
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 5.9e-22 108.2 130 47.7
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.9e-20 103.2 113 53.1
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.9e-20 103.2 113 53.1
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 7.3e-20 101.3 140 45.0
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 1.8e-18 96.7 61 77.0
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 6.4e-16 88.2 47 91.5
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 1.6e-14 83.6 74 64.9
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 2.0e-14 83.2 46 82.6
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 6.0e-14 81.6 164 36.6
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 3.9e-13 79.0 55 67.3
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 1.8e-10 70.1 98 45.9
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 6.4e-08 61.6 41 75.6
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 1.9e-07 60.1 32 78.1
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.6e-06 57.0 32 71.9
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.6e-06 57.0 32 71.9


User provided reference genes

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