Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p29680 Brassica napus HOM05D004414 ORTHO05D001824 1.1e-81 306.6 159 100.0
BolC8t50577H Brassica oleracea HOM05D004414 ORTHO05D001824 1.5e-73 279.6 205 76.6
Thhalv10010203m.g Eutrema salsugineum HOM05D004414 ORTHO05D001824 1.2e-54 216.9 188 67.0
BcaB01g00189 Brassica carinata HOM05D004414 ORTHO05D001824 7.5e-54 214.2 217 60.4
AT3G54500 Arabidopsis thaliana HOM05D004414 ORTHO05D001824 9.5e-49 197.2 131 82.4
AL5G35550 Arabidopsis lyrata HOM05D004414 ORTHO05D001824 2.1e-48 196.1 131 82.4
BcaB02g07735 Brassica carinata HOM05D004414 ORTHO05D001824 3.6e-48 195.3 139 76.3
CARHR164400 Cardamine hirsuta HOM05D004414 ORTHO05D001824 9.8e-46 187.2 221 53.8
BcaC07g39819 Brassica carinata HOM05D004414 ORTHO05D001824 2.9e-45 185.7 209 56.5
Carub.0005s2112 Capsella rubella HOM05D004414 ORTHO05D001824 6.4e-45 184.5 221 53.4
Aa31sc434G10 Aethionema arabicum HOM05D004414 ORTHO05D001824 5.0e-42 174.9 135 74.1
BolC6t37405H Brassica oleracea HOM05D004414 ORTHO05D001824 6.6e-42 174.5 141 72.3
A07p22140 Brassica napus HOM05D004414 ORTHO05D001824 8.6e-42 174.1 141 73.8
BraA07t29897Z Brassica rapa HOM05D004414 ORTHO05D001824 1.1e-41 173.7 132 78.0
BcaC08g44684 Brassica carinata HOM05D004414 ORTHO05D001824 2.5e-41 172.6 141 72.3
C06p22190 Brassica napus HOM05D004414 ORTHO05D001824 2.5e-41 172.6 141 72.3
THA.LOC104801739 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 7.8e-35 151.0 141 66.0
THA.LOC104824187 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 1.0e-34 150.6 132 69.7
Sp5g07920 Schrenkiella parvula HOM05D004414 ORTHO05D001824 5.1e-34 148.3 222 46.8
BcaC07g39818 Brassica carinata HOM05D004414 ORTHO05D001824 2.3e-31 139.4 89 84.3
COL.COLO4_09982 Corchorus olitorius HOM05D004414 ORTHO05D001824 1.3e-29 133.7 158 51.9
Cpa.g.sc223.14 Carica papaya HOM05D004414 ORTHO05D001824 4.9e-29 131.7 132 59.8
Thecc.10G167000 Theobroma cacao HOM05D004414 ORTHO05D001824 1.1e-28 130.6 146 53.4
Prupe.2G032000 Prunus persica HOM05D004414 ORTHO05D001824 4.6e-27 125.2 150 50.7
Duzib128G0092 Durio zibethinus HOM05D004414 ORTHO05D001824 6.0e-27 124.8 131 55.0
Duzib106G1605 Durio zibethinus HOM05D004414 ORTHO05D001824 1.3e-26 123.6 145 48.3
RcHm_v2.0_Chr1g0321761 Rosa chinensis HOM05D004414 ORTHO05D001824 2.3e-26 122.9 158 49.4
MD02G1290900 Malus domestica HOM05D004414 ORTHO05D001824 3.0e-26 122.5 134 53.0
Duzib114G0298 Durio zibethinus HOM05D004414 ORTHO05D001824 3.9e-26 122.1 124 54.8
COL.COLO4_09984 Corchorus olitorius HOM05D004414 ORTHO05D001824 8.6e-26 120.9 158 48.7
QL04p014278 Quercus lobata HOM05D004414 ORTHO05D001824 1.5e-25 120.2 147 51.0
MD07G1036600 Malus domestica HOM05D004414 ORTHO05D001824 7.3e-25 117.9 160 46.9
Dinv09256 Davidia involucrata HOM05D004414 ORTHO05D001824 1.6e-24 116.7 127 51.2
Potri.001G025100 Populus trichocarpa HOM05D004414 ORTHO05D001824 2.1e-24 116.3 160 45.6
TWI63G0867 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 8.1e-24 114.4 135 51.9
Potri.T127206 Populus trichocarpa HOM05D004414 ORTHO05D001824 1.4e-23 113.6 160 46.2
Potri.T126406 Populus trichocarpa HOM05D004414 ORTHO05D001824 1.8e-23 113.2 160 46.2
FvH4_7g02700 Fragaria vesca HOM05D004414 ORTHO05D001824 3.1e-23 112.5 131 51.1
FAN06G1884 Fragaria x ananassa HOM05D004414 ORTHO05D001824 3.1e-23 112.5 131 51.1
Potri.003G200600 Populus trichocarpa HOM05D004414 ORTHO05D001824 4.0e-23 112.1 142 49.3
Hund13341 Selenicereus undatus HOM05D004414 ORTHO05D001824 4.0e-23 112.1 141 45.4
CiPaw.13G012100 Carya illinoinensis HOM05D004414 ORTHO05D001824 5.2e-23 111.7 134 50.0
Sabra03G0148200 Salix brachista HOM05D004414 ORTHO05D001824 6.8e-23 111.3 142 49.3
Haze_03067 Corylus avellana HOM05D004414 ORTHO05D001824 1.2e-22 110.5 147 47.6
Ciclev10004446m.g Citrus clementina HOM05D004414 ORTHO05D001824 1.5e-22 110.2 132 55.3
CiPaw.14G006500 Carya illinoinensis HOM05D004414 ORTHO05D001824 3.4e-22 109.0 132 48.5
MELO3C012461.2 Cucumis melo HOM05D004414 ORTHO05D001824 4.4e-22 108.6 126 52.4
AUR62026844 Chenopodium quinoa HOM05D004414 ORTHO05D001824 9.9e-22 107.5 132 47.7
ClCG05G026710 Citrullus lanatus HOM05D004414 ORTHO05D001824 9.9e-22 107.5 126 51.6
Atru.chr12.1399 Acer truncatum HOM05D004414 ORTHO05D001824 1.3e-21 107.1 160 50.0
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 1.3e-21 107.1 133 46.6
CSS0028207 Camellia sinensis var. sinensis HOM05D004414 ORTHO05D001824 2.2e-21 106.3 134 46.3
Dinv32037 Davidia involucrata HOM05D004414 ORTHO05D001824 2.9e-21 105.9 126 48.4
FAN03G1361 Fragaria x ananassa HOM05D004414 ORTHO05D001824 2.9e-21 105.9 130 49.2
FAN10G4033 Fragaria x ananassa HOM05D004414 ORTHO05D001824 3.8e-21 105.5 157 43.3
Potri.T126606 Populus trichocarpa HOM05D004414 ORTHO05D001824 3.8e-21 105.5 142 48.6
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 4.9e-21 105.1 131 48.9
arahy.Tifrunner.gnm1.ann1.19HB3K Arachis hypogaea HOM05D004414 ORTHO05D001824 6.4e-21 104.8 131 50.4
arahy.Tifrunner.gnm1.ann1.XZ22FX Arachis hypogaea HOM05D004414 ORTHO05D001824 6.4e-21 104.8 131 50.4
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 6.4e-21 104.8 124 50.0
Gorai.009G296300 Gossypium raimondii HOM05D004414 ORTHO05D001824 6.4e-21 104.8 124 50.0
TAR633G1473 Trochodendron aralioides HOM05D004414 ORTHO05D001824 2.4e-20 102.8 135 47.4
GSVIVG01000669001 Vitis vinifera HOM05D004414 ORTHO05D001824 3.2e-20 102.4 135 47.4
Sed0007735 Sechium edule HOM05D004414 ORTHO05D001824 4.2e-20 102.1 130 49.2
AUR62037207 Chenopodium quinoa HOM05D004414 ORTHO05D001824 7.1e-20 101.3 132 46.2
FAN01G0485 Fragaria x ananassa HOM05D004414 ORTHO05D001824 7.1e-20 101.3 130 46.9
TWI15G1156 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 9.3e-20 100.9 134 50.0
TAR369G0352 Trochodendron aralioides HOM05D004414 ORTHO05D001824 1.6e-19 100.1 127 49.6
CAN.G179.18 Capsicum annuum HOM05D004414 ORTHO05D001824 3.5e-19 99.0 130 48.5
Glyma.13G199300 Glycine max HOM05D004414 ORTHO05D001824 3.5e-19 99.0 124 50.0
CANSAT56G3557 Cannabis sativa HOM05D004414 ORTHO05D001824 4.6e-19 98.6 147 45.6
Sc10g0004350 Simmondsia chinensis HOM05D004414 ORTHO05D001824 7.8e-19 97.8 127 48.0
Glyma.04G141400 Glycine max HOM05D004414 ORTHO05D001824 1.0e-18 97.4 126 49.2
Sed0019716 Sechium edule HOM05D004414 ORTHO05D001824 1.0e-18 97.4 126 50.0
VMungo1080G0433 Vigna mungo HOM05D004414 ORTHO05D001824 1.3e-18 97.1 129 48.1
Nitab4.5_0008169g0010 Nicotiana tabacum HOM05D004414 ORTHO05D001824 1.7e-18 96.7 145 44.8
Potri.T126906 Populus trichocarpa HOM05D004414 ORTHO05D001824 1.7e-18 96.7 142 46.5
TPR.G9876 Trifolium pratense HOM05D004414 ORTHO05D001824 1.7e-18 96.7 143 45.5
Glyma.15G237600 Glycine max HOM05D004414 ORTHO05D001824 3.0e-18 95.9 124 49.2
Nitab4.5_0002103g0040 Nicotiana tabacum HOM05D004414 ORTHO05D001824 3.0e-18 95.9 145 44.1
Phvul.005G029800 Phaseolus vulgaris HOM05D004414 ORTHO05D001824 3.0e-18 95.9 130 46.9
Phvul.011G209100 Phaseolus vulgaris HOM05D004414 ORTHO05D001824 3.0e-18 95.9 138 45.7
Sopen01g030520 Solanum pennellii HOM05D004414 ORTHO05D001824 3.9e-18 95.5 130 46.9
Lj9A655T40 Lonicera japonica HOM05D004414 ORTHO05D001824 6.6e-18 94.7 124 46.0
Actinidia06255 Actinidia chinensis HOM05D004414 ORTHO05D001824 8.7e-18 94.4 128 46.1
Ah.12g062930 Amaranthus hybridus HOM05D004414 ORTHO05D001824 1.9e-17 93.2 126 46.0
Manes.04G165400 Manihot esculenta HOM05D004414 ORTHO05D001824 1.9e-17 93.2 141 44.7
Hma1.2p1_1251F.1_g270410 Hydrangea macrophylla HOM05D004414 ORTHO05D001824 2.5e-17 92.8 138 44.2
Ah.10g030650 Amaranthus hybridus HOM05D004414 ORTHO05D001824 4.3e-17 92.0 146 41.8
Lalb_Chr01g0007921 Lupinus albus HOM05D004414 ORTHO05D001824 5.6e-17 91.7 126 46.8
Glyma.11G154700 Glycine max HOM05D004414 ORTHO05D001824 7.3e-17 91.3 135 46.7
MSTRG.20525 Avicennia marina HOM05D004414 ORTHO05D001824 9.6e-17 90.9 159 40.9
Nn7g36611 Nelumbo nucifera HOM05D004414 ORTHO05D001824 1.3e-16 90.5 138 45.7
VMungo1127G0555 Vigna mungo HOM05D004414 ORTHO05D001824 1.3e-16 90.5 126 47.6
SalBow5G0980 Salvia bowleyana HOM05D004414 ORTHO05D001824 1.6e-16 90.1 145 44.8
SalBow5G2656 Salvia bowleyana HOM05D004414 ORTHO05D001824 1.6e-16 90.1 145 44.8
Lj3g0012335 Lotus japonicus HOM05D004414 ORTHO05D001824 2.8e-16 89.4 137 45.3
Psat5g217560 Pisum sativum HOM05D004414 ORTHO05D001824 2.8e-16 89.4 133 45.9
vmacro22867 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 2.8e-16 89.4 127 46.5
vmacro22979 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 2.8e-16 89.4 127 46.5
Aqoxy1G00343 Aquilegia oxysepala HOM05D004414 ORTHO05D001824 3.6e-16 89.0 134 45.5
Cc00_g33900 Coffea canephora HOM05D004414 ORTHO05D001824 3.1e-15 85.9 145 43.4
CsaV3_5G036640 Cucumis sativus L. HOM05D004414 ORTHO05D001824 4.0e-15 85.5 105 48.6
Eucgr.G03246 Eucalyptus grandis HOM05D004414 ORTHO05D001824 5.3e-15 85.1 129 46.5
Eucgr.J01191 Eucalyptus grandis HOM05D004414 ORTHO05D001824 1.5e-14 83.6 142 40.8
MBI13_g36284_MAGBIO Magnolia biondii HOM05D004414 ORTHO05D001824 2.0e-14 83.2 134 43.3
DCAR_003244 Daucus carota HOM05D001375 ORTHO05D001222 2.6e-14 82.8 143 42.0
Migut.B01215 Erythranthe guttata HOM05D004414 ORTHO05D001824 2.6e-14 82.8 138 42.8
Oeu056557.1 Olea europaea HOM05D004414 ORTHO05D001824 3.4e-14 82.4 135 43.7
unitig_749.g13482 Utricularia gibba HOM05D005545 ORTHO05D006917 1.3e-13 80.5 133 42.9
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 8.4e-13 77.8 125 46.4
PSO384G4230 Papaver somniferum HOM05D004414 ORTHO05D001824 1.1e-12 77.4 129 49.6
HPP92_013972 Vanilla planifolia HOM05D004414 ORTHO05D001824 2.4e-12 76.3 124 44.4
CDE10G1254 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 3.2e-12 75.9 129 44.2
Rhsim07G0065500 Rhododendron simsii HOM05D004414 ORTHO05D001824 5.4e-12 75.1 128 43.8
ECA248G3760 Erigeron canadensis HOM05D004414 ORTHO05D001824 7.1e-12 74.7 151 38.4
Zm00001eb132420 Zea mays HOM05D004414 ORTHO05D001824 2.7e-11 72.8 152 39.5
SEGI_41395 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 1.0e-10 70.9 131 42.0
Zm00001eb341790 Zea mays HOM05D004414 ORTHO05D001824 1.0e-10 70.9 140 39.3
CDE10G0594 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 3.9e-10 68.9 125 42.4
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 3.9e-10 68.9 132 39.4
SGA_v2.0_scaffold124G33637 Striga asiatica HOM05D004414 ORTHO05D001824 1.5e-09 67.0 120 40.0
Peaxi162Scf00309g00414 Petunia axillaris HOM05D004414 ORTHO05D001824 5.6e-09 65.1 107 43.9
HanXRQChr04g0095061 Helianthus annuus HOM05D004414 ORTHO05D001824 1.6e-08 63.5 120 38.3
Cc00_g16250 Coffea canephora HOM05D004414 ORTHO05D001824 4.8e-08 62.0 67 50.7
Actinidia19458 Actinidia chinensis HOM05D004414 ORTHO05D001824 6.2e-08 61.6 81 43.2
CDE03G0404 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 8.1e-08 61.2 151 35.8
Os01g0498200 Oryza sativa ssp. japonica HOM05D004414 ORTHO05D001824 1.4e-07 60.5 136 39.0
SEGI_03595 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 2.4e-07 59.7 130 36.9
SEGI_13704 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 2.4e-07 59.7 130 36.9
HPP92_012100 Vanilla planifolia HOM05D004414 ORTHO05D001824 2.4e-07 59.7 128 40.6
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 3.1e-07 59.3 144 33.3
Lsat_1_v5_gn_1_114861 Lactuca sativa HOM05D004414 ORTHO05D001824 3.1e-07 59.3 144 36.8
SMO119G0036 Selaginella moellendorffii HOM05D004414 ORTHO05D001824 2.6e-06 56.2 123 39.0
CDE12G0797 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 3.4e-06 55.8 124 34.7
Pp3c13_6620 Physcomitrium patens HOM05D004414 ORTHO05D001824 7.6e-06 54.7 133 36.1


User provided reference genes

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