Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 1.8e-162 575.9 286 100.0
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 1.8e-162 575.9 286 100.0
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 3.7e-160 568.2 286 98.6
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 3.7e-160 568.2 286 98.6
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 1.2e-139 500.0 287 88.2
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 8.0e-139 497.3 288 87.5
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 8.0e-139 497.3 287 86.8
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 2.0e-137 492.7 286 87.1
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 2.6e-137 492.3 288 86.8
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 3.4e-137 491.9 287 87.8
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 2.2e-136 489.2 289 86.9
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 2.4e-135 485.7 287 85.4
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 3.1e-135 485.3 287 86.1
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 3.5e-134 481.9 288 85.4
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 2.5e-132 475.7 287 84.7
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 2.5e-132 475.7 286 84.6
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 7.2e-132 474.2 287 84.0
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 3.0e-122 442.2 286 79.4
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 1.0e-117 427.2 208 97.6
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 1.5e-108 396.7 285 71.6
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 1.9e-108 396.4 286 70.6
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 3.3e-108 395.6 287 70.0
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.2e-107 393.7 287 69.7
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.6e-107 393.3 285 70.2
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 8.1e-107 391.0 285 69.8
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 4.0e-106 388.7 292 69.5
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 5.2e-106 388.3 286 68.9
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 9.8e-105 384.0 284 69.7
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 8.3e-104 380.9 266 72.9
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 1.4e-103 380.2 287 67.9
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 1.9e-103 379.8 312 64.1
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 1.9e-103 379.8 272 71.0
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 2.4e-103 379.4 275 70.5
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 2.4e-103 379.4 263 73.0
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 3.2e-103 379.0 285 68.1
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 4.1e-103 378.6 275 69.8
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 2.7e-102 375.9 287 67.9
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.7e-102 375.9 287 67.9
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 4.6e-102 375.2 274 66.4
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 6.0e-102 374.8 288 67.0
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 7.8e-102 374.4 287 67.6
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 7.8e-102 374.4 287 67.6
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.0e-101 374.0 288 67.0
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 2.3e-101 372.9 262 72.5
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 2.3e-101 372.9 267 70.4
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 3.0e-101 372.5 268 70.5
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 3.9e-101 372.1 282 68.4
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 3.9e-101 372.1 266 69.2
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 5.1e-101 371.7 285 66.7
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 8.6e-101 370.9 268 70.1
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 1.1e-100 370.5 279 68.1
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 1.5e-100 370.2 268 69.8
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 1.5e-100 370.2 285 67.4
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 7.3e-100 367.9 284 65.5
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 9.5e-100 367.5 284 67.3
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 9.5e-100 367.5 284 65.5
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 9.5e-100 367.5 265 69.8
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 9.5e-100 367.5 285 66.7
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 1.6e-99 366.7 263 69.2
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 2.8e-99 365.9 263 69.2
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 3.6e-99 365.5 285 66.7
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 4.7e-99 365.2 267 69.3
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 6.2e-99 364.8 284 67.3
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 1.1e-98 364.0 285 67.4
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 1.1e-98 364.0 284 66.9
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 1.4e-98 363.6 285 65.6
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 1.4e-98 363.6 280 66.4
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 3.1e-98 362.5 266 68.4
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 3.1e-98 362.5 275 68.4
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 5.2e-98 361.7 277 66.8
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 6.8e-98 361.3 266 67.7
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 6.8e-98 361.3 264 68.6
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 1.2e-97 360.5 282 67.4
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 2.6e-97 359.4 266 68.8
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 2.6e-97 359.4 266 68.4
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 5.8e-97 358.2 268 67.9
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 5.8e-97 358.2 285 65.3
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 7.6e-97 357.8 287 67.2
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 2.9e-96 355.9 267 66.7
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 1.4e-95 353.6 275 65.8
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 1.4e-95 353.6 262 66.8
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 3.2e-95 352.4 298 63.8
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 7.1e-95 351.3 259 68.7
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 9.2e-95 350.9 259 68.7
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 2.1e-94 349.7 266 66.9
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 1.7e-93 346.7 213 77.0
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.3e-93 346.3 272 65.8
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 1.5e-92 343.6 213 75.6
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 3.3e-92 342.4 253 68.8
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 9.6e-92 340.9 261 64.4
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 3.1e-90 335.9 325 56.6
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 5.2e-90 335.1 257 66.9
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 2.0e-89 333.2 206 77.7
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 2.6e-89 332.8 265 64.2
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 3.4e-89 332.4 277 62.5
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 1.3e-88 330.5 279 63.1
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 2.9e-88 329.3 318 55.7
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 8.4e-88 327.8 294 59.5
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 3.2e-87 325.9 285 61.1
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 4.2e-87 325.5 285 61.4
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 5.4e-87 325.1 266 64.3
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 7.1e-87 324.7 285 60.4
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 1.3e-85 320.5 277 60.3
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 4.3e-84 315.5 270 61.1
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 1.2e-81 307.4 278 57.2
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.4e-74 283.9 269 55.4
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 2.9e-72 276.2 241 61.4
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 6.4e-72 275.0 269 54.3
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.4e-71 273.9 261 57.9
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 1.4e-71 273.9 265 55.8
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 1.9e-68 263.5 200 66.5
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 1.3e-67 260.8 226 57.5
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 1.6e-67 260.4 211 62.1
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 1.8e-66 256.9 214 62.1
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 8.4e-64 248.1 183 68.3
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 3.0e-61 239.6 181 65.7
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 3.9e-61 239.2 277 46.9
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 3.1e-58 229.6 208 55.3
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 4.1e-58 229.2 202 62.4
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 9.0e-58 228.0 181 63.5
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 4.5e-57 225.7 215 49.8
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 1.0e-48 198.0 170 56.5
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 8.8e-45 184.9 193 49.2
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 1.5e-41 174.1 280 42.5
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 2.2e-35 153.7 295 34.6
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.2e-35 153.7 231 41.6
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 3.2e-31 139.8 279 33.7
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.2e-27 127.1 88 75.0
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 4.8e-27 125.9 171 39.2
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 1.7e-24 117.5 83 74.7
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 1.2e-20 104.8 52 94.2
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 4.4e-20 102.8 54 87.0
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 1.3e-19 101.3 57 82.5
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.6e-09 67.8 180 26.7
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 2.0e-09 67.4 177 29.9
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 1.3e-08 64.7 181 29.3
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.7e-08 64.3 173 30.1
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 2.3e-08 63.9 180 28.9
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.3e-08 63.9 180 28.3
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.3e-08 63.9 180 28.3
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 2.3e-08 63.9 177 29.4
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 3.8e-08 63.2 179 27.9
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 5.0e-08 62.8 178 28.1
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 5.0e-08 62.8 180 29.4
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 5.0e-08 62.8 175 28.0
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 6.6e-08 62.4 176 28.4
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 6.6e-08 62.4 178 27.5
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 8.6e-08 62.0 176 27.3
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 1.1e-07 61.6 175 27.4
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.5e-07 61.2 152 27.0
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.5e-07 61.2 187 27.3
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.9e-07 60.8 183 27.3
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 2.5e-07 60.5 193 28.5
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 3.3e-07 60.1 182 27.5
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 7.3e-07 58.9 178 27.0
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 7.3e-07 58.9 178 24.7
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 9.5e-07 58.5 177 26.6
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 9.5e-07 58.5 182 27.5
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 9.5e-07 58.5 177 27.7
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 1.2e-06 58.2 178 28.7
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 1.2e-06 58.2 181 28.2
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 1.6e-06 57.8 179 26.8
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 2.1e-06 57.4 185 29.2
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 2.1e-06 57.4 177 24.9
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 2.8e-06 57.0 56 60.7
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 3.6e-06 56.6 178 25.8
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 4.7e-06 56.2 195 24.6
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 4.7e-06 56.2 180 25.6
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 4.7e-06 56.2 152 28.3
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 4.7e-06 56.2 157 28.7
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 6.1e-06 55.8 179 26.3
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 6.1e-06 55.8 158 26.6
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 8.0e-06 55.5 154 27.9
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 8.0e-06 55.5 191 24.1


User provided reference genes

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