Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39683 Brassica carinata HOM05D001415 ORTHO05D001075 4.9e-27 123.6 58 100.0
C08p28460 Brassica napus HOM05D001415 ORTHO05D001075 4.9e-27 123.6 58 100.0
BolC8t50454H Brassica oleracea HOM05D001415 ORTHO05D001075 4.9e-27 123.6 58 100.0
A09p46240 Brassica napus HOM05D001415 ORTHO05D001075 1.8e-26 121.7 58 98.3
BraA09t40087Z Brassica rapa HOM05D001415 ORTHO05D001075 1.8e-26 121.7 58 98.3
BcaB01g00298 Brassica carinata HOM05D001415 ORTHO05D001075 7.0e-26 119.8 56 98.2
BcaB01g00299 Brassica carinata HOM05D001415 ORTHO05D001075 7.0e-26 119.8 56 98.2
A07p21460 Brassica napus HOM05D001415 ORTHO05D001075 1.0e-16 89.4 56 73.2
BraA07t29833Z Brassica rapa HOM05D001415 ORTHO05D001075 1.0e-16 89.4 56 73.2
AL5G34120 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.9e-15 85.1 55 72.7
AT3G53232 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 7.3e-15 83.2 55 69.1
CARHR163060 Cardamine hirsuta HOM05D001415 ORTHO05D001075 1.2e-14 82.4 52 75.0
BcaC01g05622 Brassica carinata HOM05D001415 ORTHO05D001075 6.2e-14 80.1 51 74.5
A03p20360 Brassica napus HOM05D001415 ORTHO05D001075 6.2e-14 80.1 51 74.5
C03p23940 Brassica napus HOM05D001415 ORTHO05D001075 6.2e-14 80.1 51 74.5
BcaB01g03804 Brassica carinata HOM05D001415 ORTHO05D001075 8.1e-14 79.7 51 74.5
BraA03t11281Z Brassica rapa HOM05D001415 ORTHO05D001075 8.1e-14 79.7 51 74.5
A05p08830 Brassica napus HOM05D001415 ORTHO05D001075 1.4e-13 79.0 50 74.0
BraA05t19850Z Brassica rapa HOM05D001415 ORTHO05D001075 1.4e-13 79.0 50 74.0
BolC3t14783H Brassica oleracea HOM05D001415 ORTHO05D001075 1.8e-13 78.6 51 72.5
Carub.0004s1883 Capsella rubella HOM05D001415 ORTHO05D001075 3.1e-13 77.8 50 70.0
AT2G36985 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 4.0e-13 77.4 50 72.0
BcaB02g09311 Brassica carinata HOM05D001415 ORTHO05D001075 8.9e-13 76.3 50 74.0
BcaB06g28964 Brassica carinata HOM05D001415 ORTHO05D001075 2.0e-12 75.1 51 68.6
BcaC02g07562 Brassica carinata HOM05D001415 ORTHO05D001075 2.6e-12 74.7 50 70.0
BcaC02g07563 Brassica carinata HOM05D001415 ORTHO05D001075 2.6e-12 74.7 50 70.0
BcaC02g07564 Brassica carinata HOM05D001415 ORTHO05D001075 2.6e-12 74.7 50 70.0
C04p65620 Brassica napus HOM05D001415 ORTHO05D001075 2.6e-12 74.7 51 66.7
A04p28260 Brassica napus HOM05D001415 ORTHO05D001075 4.4e-12 73.9 51 66.7
Carub.0005s1977 Capsella rubella HOM05D001415 ORTHO05D001075 4.4e-12 73.9 48 72.9
AL4G33230 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 5.8e-12 73.6 50 68.0
BcaC02g11823 Brassica carinata HOM05D001415 ORTHO05D001075 5.8e-12 73.6 49 67.3
BcaC02g11824 Brassica carinata HOM05D001415 ORTHO05D001075 5.8e-12 73.6 49 67.3
C04p10960 Brassica napus HOM05D001415 ORTHO05D001075 5.8e-12 73.6 49 67.3
BolC4t22690H Brassica oleracea HOM05D001415 ORTHO05D001075 5.8e-12 73.6 49 67.3
BolC4t28054H Brassica oleracea HOM05D001415 ORTHO05D001075 5.8e-12 73.6 51 66.7
CiPaw.10G130800 Carya illinoinensis HOM05D001415 ORTHO05D001075 3.7e-11 70.9 39 79.5
BcaC02g07565 Brassica carinata HOM05D001415 ORTHO05D001075 6.4e-11 70.1 50 68.0
CANSAT80G1980 Cannabis sativa HOM05D001415 ORTHO05D001075 6.4e-11 70.1 44 75.0
Duzib128G1683 Durio zibethinus HOM05D001415 ORTHO05D001075 6.4e-11 70.1 43 72.1
COL.COLO4_26977 Corchorus olitorius HOM05D001415 ORTHO05D001075 8.3e-11 69.7 44 68.2
Manes.09G067380 Manihot esculenta HOM05D001415 ORTHO05D001075 8.3e-11 69.7 51 60.8
Potri.006G125600 Populus trichocarpa HOM05D001415 ORTHO05D001075 8.3e-11 69.7 49 63.3
Aa31LG5G22210 Aethionema arabicum HOM05D001415 ORTHO05D001075 1.9e-10 68.6 52 63.5
Gohir.A04G072400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.9e-10 68.6 40 72.5
Gohir.D04G111000 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.9e-10 68.6 40 72.5
Gohir.D09G143600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.9e-10 68.6 39 74.4
Gorai.006G164900 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.9e-10 68.6 39 74.4
Gorai.009G415100 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.9e-10 68.6 40 72.5
Lj1g0014030 Lotus japonicus HOM05D001415 ORTHO05D001075 2.4e-10 68.2 57 59.6
Lalb_Chr25g0289021 Lupinus albus HOM05D001415 ORTHO05D001075 2.4e-10 68.2 40 72.5
Manes.08G009400 Manihot esculenta HOM05D001415 ORTHO05D001075 3.2e-10 67.8 39 71.8
Glyma.03G182700 Glycine max HOM05D001415 ORTHO05D001075 4.1e-10 67.4 39 74.4
Glyma.19G183200 Glycine max HOM05D001415 ORTHO05D001075 4.1e-10 67.4 39 74.4
Lalb_Chr20g0112631 Lupinus albus HOM05D001415 ORTHO05D001075 4.1e-10 67.4 55 58.2
Psat3g042400 Pisum sativum HOM05D001415 ORTHO05D001075 7.1e-10 66.6 41 73.2
TPR.G9363 Trifolium pratense HOM05D001415 ORTHO05D001075 7.1e-10 66.6 41 73.2
Lalb_Chr01g0018721 Lupinus albus HOM05D001415 ORTHO05D001075 9.2e-10 66.2 45 62.2
Phvul.001G178700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 9.2e-10 66.2 38 73.7
Medtr7g101850 Medicago truncatula HOM05D001415 ORTHO05D001075 1.2e-09 65.9 52 59.6
GSVIVG01025722001 Vitis vinifera HOM05D001415 ORTHO05D001075 1.2e-09 65.9 36 80.6
Gohir.A09G147800 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.6e-09 65.5 39 71.8
Migut.J00518 Erythranthe guttata HOM05D001415 ORTHO05D001075 3.5e-09 64.3 37 73.0
Glyma.10G057200 Glycine max HOM05D001415 ORTHO05D001075 3.5e-09 64.3 45 57.8
RcHm_v2.0_Chr3g0470051 Rosa chinensis HOM05D001415 ORTHO05D001075 6.0e-09 63.5 39 66.7
VMungo0720G3116 Vigna mungo HOM05D001415 ORTHO05D001075 6.0e-09 63.5 46 58.7
FAN14G2263 Fragaria x ananassa HOM05D001415 ORTHO05D001075 7.8e-09 63.2 38 68.4
Gohir.A11G324200 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.0e-08 62.8 45 60.0
THA.LOC109116388 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 1.0e-08 62.8 50 62.0
Migut.L01694 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.7e-08 62.0 52 57.7
MD04G1094700 Malus domestica HOM05D001415 ORTHO05D001075 3.0e-08 61.2 45 62.2
Glyma.13G143700 Glycine max HOM05D001415 ORTHO05D001075 3.9e-08 60.8 37 67.6
Gohir.D11G343300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.9e-08 60.8 37 70.3
Gorai.007G373400 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.9e-08 60.8 37 70.3
FAN05G3971 Fragaria x ananassa HOM05D001415 ORTHO05D001075 5.1e-08 60.5 63 47.6
Gohir.A10G203600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.1e-08 60.5 53 56.6
Gohir.D10G211700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.1e-08 60.5 53 56.6
Gorai.011G237600 Gossypium raimondii HOM05D001415 ORTHO05D001075 5.1e-08 60.5 53 56.6
Gorai.009G311300 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.1e-07 59.3 52 53.8
HanXRQChr14g0454501 Helianthus annuus HOM05D001415 ORTHO05D001075 1.1e-07 59.3 46 60.9
TWI74G0876 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.5e-07 58.9 47 63.8
Gohir.A05G293900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.5e-07 58.2 52 53.8
Gohir.D05G294600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.5e-07 58.2 52 53.8
unitig_8.g4710 Utricularia gibba HOM05D001415 ORTHO05D001075 3.3e-07 57.8 39 64.1
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 4.3e-07 57.4 49 53.1
CAN.G900.45 Capsicum annuum HOM05D001415 ORTHO05D001075 5.6e-07 57.0 34 73.5
DCAR_020825 Daucus carota HOM05D001415 ORTHO05D001075 5.6e-07 57.0 40 62.5
Manes.10G049900 Manihot esculenta HOM05D001415 ORTHO05D001075 5.6e-07 57.0 52 53.8
COL.COLO4_17147 Corchorus olitorius HOM05D001415 ORTHO05D001075 7.3e-07 56.6 52 51.9
Sed0021325 Sechium edule HOM05D001415 ORTHO05D001075 7.3e-07 56.6 34 73.5
Sed0022297 Sechium edule HOM05D001415 ORTHO05D001075 9.5e-07 56.2 48 56.2
HanXRQChr02g0053421 Helianthus annuus HOM05D001415 ORTHO05D001075 1.6e-06 55.5 35 65.7
MD12G1114900 Malus domestica HOM05D001415 ORTHO05D001075 2.8e-06 54.7 34 70.6
SHI12464 Sapria himalayana HOM05D001415 ORTHO05D001075 2.8e-06 54.7 48 58.3
ClCG04G009250 Citrullus lanatus HOM05D001415 ORTHO05D001075 3.6e-06 54.3 35 65.7
Medtr1g063830 Medicago truncatula HOM05D001415 ORTHO05D001075 4.7e-06 53.9 48 47.9
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.7e-06 53.9 50 50.0
Prupe.6G233800 Prunus persica HOM05D001415 ORTHO05D001075 4.7e-06 53.9 39 64.1
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 6.2e-06 53.5 40 55.0
Phvul.007G098500 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 6.2e-06 53.5 41 56.1
CSS0026842 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 8.1e-06 53.1 49 55.1
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 8.1e-06 53.1 52 50.0


User provided reference genes

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