Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 1.1e-249 866.3 464 100.0
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 3.1e-233 811.6 479 93.7
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 4.6e-221 771.2 471 91.3
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.4e-220 769.6 464 92.5
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 1.4e-217 759.6 464 87.7
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 1.8e-217 759.2 466 89.1
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 5.3e-217 757.7 465 89.5
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 1.5e-216 756.1 466 88.8
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.7e-215 752.7 472 87.7
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 2.6e-211 738.8 476 86.6
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.1e-209 733.4 465 87.3
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 4.2e-206 721.5 463 87.3
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 4.2e-206 721.5 463 87.3
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 5.5e-206 721.1 480 85.0
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.1e-198 696.8 472 80.7
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 2.5e-198 695.7 471 82.6
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 3.2e-198 695.3 464 83.0
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 6.8e-196 687.6 465 83.4
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 8.8e-196 687.2 472 80.7
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 7.5e-195 684.1 465 82.2
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 5.9e-184 647.9 472 78.4
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.7e-183 646.4 471 78.1
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.0e-175 620.5 478 73.8
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 2.9e-170 602.4 418 82.3
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 4.0e-164 582.0 483 66.7
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 7.5e-163 577.8 479 66.4
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 9.8e-163 577.4 456 73.5
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 4.9e-162 575.1 484 66.1
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.1e-161 573.9 479 67.2
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 9.2e-161 570.9 479 66.6
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.2e-160 570.5 486 64.6
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 2.1e-160 569.7 495 64.6
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.5e-160 568.9 486 64.2
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 7.8e-160 567.8 484 63.4
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 7.8e-160 567.8 483 67.3
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.0e-159 567.4 473 66.8
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.0e-159 567.4 474 66.7
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.0e-159 567.4 480 65.8
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.3e-159 567.0 474 66.5
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.7e-159 566.6 468 71.8
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 2.3e-159 566.2 474 66.2
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 8.6e-159 564.3 476 64.9
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-158 563.9 481 64.4
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 4.3e-158 562.0 481 63.8
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 7.3e-158 561.2 467 66.6
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 9.5e-158 560.8 479 64.7
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.2e-157 560.5 466 66.1
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 1.8e-156 556.6 479 64.3
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.3e-156 556.2 471 66.5
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 2.3e-156 556.2 469 65.0
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 4.0e-156 555.4 477 65.4
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 5.2e-156 555.1 468 66.2
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 8.9e-156 554.3 468 66.2
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 1.5e-155 553.5 478 65.1
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 1.5e-155 553.5 478 65.1
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.0e-155 553.1 468 64.5
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 5.8e-155 551.6 478 63.6
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 5.8e-155 551.6 466 63.5
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 7.6e-155 551.2 483 63.1
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 9.9e-155 550.8 479 64.1
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.3e-154 550.4 492 62.2
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 2.9e-154 549.3 470 64.9
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 2.9e-154 549.3 470 64.5
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 3.7e-154 548.9 496 60.9
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 8.4e-154 547.7 479 64.3
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.9e-153 546.6 478 63.4
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 4.1e-153 545.4 467 63.8
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 5.4e-153 545.0 465 63.9
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 7.1e-153 544.7 479 63.5
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 9.2e-153 544.3 476 64.1
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.2e-152 543.9 471 64.3
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 4.6e-152 542.0 488 65.4
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 6.0e-152 541.6 474 64.6
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 7.8e-152 541.2 478 63.2
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.3e-151 540.4 481 64.7
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.3e-151 539.7 474 64.3
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 6.6e-151 538.1 483 62.9
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 8.6e-151 537.7 472 64.4
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.9e-150 536.6 475 62.5
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 2.5e-150 536.2 476 66.4
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 3.3e-150 535.8 466 63.1
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.3e-150 535.8 466 63.1
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 7.3e-150 534.6 481 64.4
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 1.2e-149 533.9 530 57.9
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.1e-149 533.1 512 59.2
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 6.2e-149 531.6 505 58.4
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.4e-148 530.4 476 64.9
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-147 527.3 456 63.4
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.2e-147 527.3 484 62.4
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 3.4e-147 525.8 492 61.6
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 3.4e-147 525.8 516 59.3
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 5.8e-147 525.0 409 69.4
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.3e-146 523.9 510 58.4
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 1.7e-146 523.5 418 67.5
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.8e-146 522.3 479 62.8
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 1.4e-145 520.4 456 64.3
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 3.2e-145 519.2 522 58.8
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 3.2e-145 519.2 471 61.6
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 7.1e-145 518.1 466 63.1
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.6e-144 516.9 389 69.2
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 6.0e-144 515.0 473 61.7
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 1.3e-143 513.8 497 58.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-143 513.8 468 62.0
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 3.9e-143 512.3 351 74.6
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 8.7e-143 511.1 541 55.3
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 1.1e-142 510.8 454 62.6
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 1.1e-142 510.8 425 64.9
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 3.3e-142 509.2 505 59.0
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 4.3e-142 508.8 337 76.6
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 4.0e-140 502.3 410 66.6
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 5.3e-140 501.9 420 67.1
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 4.4e-139 498.8 404 67.1
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 4.4e-139 498.8 482 57.9
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 9.9e-139 497.7 472 60.4
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 9.9e-139 497.7 469 61.4
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 3.2e-137 492.7 494 59.3
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 3.9e-135 485.7 467 63.4
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 6.6e-135 485.0 471 59.4
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 3.3e-134 482.6 470 58.7
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 3.1e-132 476.1 469 56.3
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 1.2e-131 474.2 512 56.1
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 1.3e-130 470.7 461 56.2
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 1.3e-127 460.7 280 81.1
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 3.3e-126 456.1 285 78.2
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 3.7e-125 452.6 467 57.8
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 8.1e-125 451.4 467 58.5
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.0e-123 446.8 337 66.5
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 3.2e-121 439.5 465 56.1
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 1.9e-118 430.3 499 52.9
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 4.3e-118 429.1 335 63.9
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.5e-115 420.6 477 51.2
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 7.2e-113 411.8 566 47.5
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.1e-112 410.2 389 58.6
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 3.9e-111 406.0 343 63.0
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.8e-108 397.1 276 68.1
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 8.5e-106 388.3 436 54.8
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.1e-103 379.0 353 57.2
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 7.4e-102 375.2 441 52.2
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.7e-96 356.7 408 52.9
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.5e-94 350.9 473 49.3
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 2.6e-94 350.1 388 52.3
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.1e-92 342.8 281 63.0
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.7e-90 337.4 342 52.3
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 4.2e-89 332.8 333 51.4
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 6.3e-77 292.4 259 57.5
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.0e-67 260.8 173 79.2
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 5.6e-57 226.1 472 41.5
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 5.2e-47 193.0 390 35.4
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 8.9e-39 165.6 246 45.5
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.6e-32 143.7 179 50.8
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.1e-31 142.1 126 61.1
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 1.2e-27 128.6 127 52.8
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 5.4e-20 103.2 101 52.5
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 2.1e-19 101.3 101 50.5
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-17 95.5 177 41.8
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.1e-17 95.5 57 78.9
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 1.2e-11 75.5 194 38.1
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 2.7e-11 74.3 200 35.0


User provided reference genes

Program Settings