Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p25720 Brassica napus HOM05D004667 ORTHO05D005522 1.1e-37 159.5 80 100.0
BolC8t50187H Brassica oleracea HOM05D004667 ORTHO05D005522 5.5e-37 157.1 78 100.0
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 1.4e-32 142.5 99 77.8
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 9.0e-32 139.8 99 76.8
BraA03t15338Z Brassica rapa HOM05D004667 ORTHO05D005522 1.0e-22 109.8 81 75.3
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 1.0e-14 83.2 79 60.8
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 6.5e-14 80.5 76 61.8
BcaC01g02459 Brassica carinata HOM05D004667 ORTHO05D005522 8.5e-14 80.1 64 70.3
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 1.5e-13 79.3 79 62.0
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 1.5e-13 79.3 76 60.5
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 2.5e-13 78.6 78 57.7
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 4.2e-13 77.8 77 58.4
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 7.2e-13 77.0 87 50.6
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 9.4e-13 76.6 76 59.2
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 9.4e-13 76.6 45 84.4
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 9.4e-13 76.6 45 84.4
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 9.4e-13 76.6 45 84.4
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 9.4e-13 76.6 45 84.4
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 9.4e-13 76.6 45 84.4
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 1.2e-12 76.3 87 51.7
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 1.2e-12 76.3 84 50.0
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 1.6e-12 75.9 45 84.4
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 1.6e-12 75.9 84 51.2
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 2.7e-12 75.1 45 82.2
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 2.7e-12 75.1 45 82.2
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 2.7e-12 75.1 45 82.2
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 6.1e-12 73.9 84 50.0
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 8.0e-12 73.6 87 48.3
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 8.0e-12 73.6 87 48.3
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 1.0e-11 73.2 89 47.2
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 1.0e-11 73.2 84 52.4
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 1.0e-11 73.2 88 48.9
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 1.4e-11 72.8 45 80.0
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 1.4e-11 72.8 89 44.9
BolC9t55593H Brassica oleracea HOM05D004667 ORTHO05D005522 1.8e-11 72.4 35 100.0
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 1.8e-11 72.4 83 50.6
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.8e-11 72.4 88 47.7
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 3.0e-11 71.6 45 80.0
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 3.0e-11 71.6 89 47.2
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 4.0e-11 71.2 89 46.1
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 5.2e-11 70.9 89 44.9
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 5.2e-11 70.9 87 44.8
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 1.1e-10 69.7 87 46.0
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 1.1e-10 69.7 87 47.1
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 1.1e-10 69.7 90 44.4
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 1.5e-10 69.3 86 45.3
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 1.5e-10 69.3 88 46.6
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 1.5e-10 69.3 85 48.2
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 2.0e-10 68.9 87 44.8
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 2.0e-10 68.9 87 44.8
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 2.0e-10 68.9 87 44.8
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 2.0e-10 68.9 87 44.8
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 2.0e-10 68.9 88 46.6
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 2.0e-10 68.9 87 46.0
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 2.6e-10 68.6 82 47.6
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 2.6e-10 68.6 82 47.6
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 2.6e-10 68.6 84 47.6
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 2.6e-10 68.6 87 44.8
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 3.3e-10 68.2 89 42.7
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 4.4e-10 67.8 83 47.0
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 5.7e-10 67.4 87 44.8
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 5.7e-10 67.4 87 46.0
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 5.7e-10 67.4 87 44.8
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 5.7e-10 67.4 84 47.6
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 7.5e-10 67.0 85 47.1
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 7.5e-10 67.0 89 46.1
BolC4t22656H Brassica oleracea HOM05D004667 ORTHO05D005522 9.7e-10 66.6 35 94.3
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 1.7e-09 65.9 87 44.8
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 1.7e-09 65.9 88 40.9
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 1.7e-09 65.9 84 44.0
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.7e-09 65.9 96 42.7
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 2.2e-09 65.5 80 48.8
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 2.2e-09 65.5 87 43.7
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 2.8e-09 65.1 88 40.9
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 2.8e-09 65.1 91 39.6
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 3.7e-09 64.7 86 45.3
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 3.7e-09 64.7 94 40.4
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 4.8e-09 64.3 76 43.4
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 4.8e-09 64.3 87 43.7
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 6.3e-09 63.9 87 43.7
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 6.3e-09 63.9 85 42.4
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 8.2e-09 63.5 85 42.4
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 1.1e-08 63.2 88 39.8
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.1e-08 63.2 85 42.4
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 1.1e-08 63.2 82 43.9
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 1.4e-08 62.8 87 44.8
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.4e-08 62.8 92 42.4
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.8e-08 62.4 86 44.2
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 1.8e-08 62.4 92 44.6
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 2.4e-08 62.0 82 42.7
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 2.4e-08 62.0 82 42.7
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 3.1e-08 61.6 85 45.9
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 3.1e-08 61.6 84 40.5
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 5.3e-08 60.8 76 47.4
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 5.3e-08 60.8 92 41.3
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 7.0e-08 60.5 82 41.5
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 7.0e-08 60.5 88 40.9
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 7.0e-08 60.5 88 40.9
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 7.0e-08 60.5 85 42.4
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 9.1e-08 60.1 54 57.4
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 9.1e-08 60.1 85 40.0
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 9.1e-08 60.1 92 40.2
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 1.2e-07 59.7 85 41.2
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 1.2e-07 59.7 82 41.5
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 1.6e-07 59.3 85 38.8
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 2.0e-07 58.9 85 41.2
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 2.7e-07 58.5 82 40.2
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 3.5e-07 58.2 85 41.2
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 3.5e-07 58.2 88 42.0
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.5e-07 58.2 95 40.0
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 4.5e-07 57.8 54 55.6
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 5.9e-07 57.4 85 43.5
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 5.9e-07 57.4 82 40.2
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 7.7e-07 57.0 82 42.7
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 7.7e-07 57.0 85 40.0
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 7.7e-07 57.0 70 48.6
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 1.7e-06 55.8 67 46.3
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.7e-06 55.8 81 38.3
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 1.7e-06 55.8 82 37.8
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 2.9e-06 55.1 56 55.4
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 2.9e-06 55.1 88 38.6
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 3.8e-06 54.7 88 37.5
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 5.0e-06 54.3 67 44.8
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 5.0e-06 54.3 67 44.8
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 5.0e-06 54.3 67 44.8
BcaB03g16837 Brassica carinata HOM05D004667 ORTHO05D005522 6.5e-06 53.9 35 82.9
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 6.5e-06 53.9 89 34.8


User provided reference genes

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