Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p21990 Brassica napus HOM05D001874 ORTHO05D002166 7.2e-39 163.3 75 100.0
BcaB08g34241 Brassica carinata HOM05D001874 ORTHO05D002166 5.7e-28 127.1 76 82.9
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 3.5e-25 117.9 131 51.1
A09p63530 Brassica napus HOM05D001874 ORTHO05D002166 6.1e-22 107.1 128 49.2
BolC8t52243H Brassica oleracea HOM05D001874 ORTHO05D002166 6.1e-22 107.1 128 49.2
BraA09t41704Z Brassica rapa HOM05D001874 ORTHO05D002166 6.1e-22 107.1 128 49.2
AL1G24550 Arabidopsis lyrata HOM05D001874 ORTHO05D002166 2.3e-21 105.1 128 48.4
AT1G12910 Arabidopsis thaliana HOM05D001874 ORTHO05D002166 2.3e-21 105.1 128 48.4
Carub.0001s1268 Capsella rubella HOM05D001874 ORTHO05D002166 2.3e-21 105.1 128 48.4
Sp1g11480 Schrenkiella parvula HOM05D001874 ORTHO05D002166 5.2e-21 104.0 128 47.7
C08p47030 Brassica napus HOM05D001874 ORTHO05D002166 6.7e-21 103.6 128 48.4
Thhalv10008091m.g Eutrema salsugineum HOM05D001874 ORTHO05D002166 2.0e-20 102.1 128 47.7
THA.LOC104805293 Tarenaya hassleriana HOM05D001874 ORTHO05D002166 3.3e-20 101.3 128 47.7
Aa31LG1G1870 Aethionema arabicum HOM05D001874 ORTHO05D002166 9.7e-20 99.8 128 46.9
CARHR013270 Cardamine hirsuta HOM05D001874 ORTHO05D002166 1.7e-19 99.0 128 46.9
Dinv33257 Davidia involucrata HOM05D001874 ORTHO05D002166 6.3e-19 97.1 74 67.6
CARHR013240 Cardamine hirsuta HOM05D001874 ORTHO05D002166 1.8e-18 95.5 128 46.1
BolC9t55329H Brassica oleracea HOM05D001874 ORTHO05D002166 7.0e-18 93.6 138 42.8
Manes.11G072300 Manihot esculenta HOM05D001874 ORTHO05D002166 2.0e-17 92.0 131 43.5
Manes.04G096000 Manihot esculenta HOM05D001874 ORTHO05D002166 3.5e-17 91.3 131 43.5
AL5G15480 Arabidopsis lyrata HOM05D001874 ORTHO05D002166 1.7e-16 89.0 128 42.2
AT3G26640 Arabidopsis thaliana HOM05D001874 ORTHO05D002166 2.2e-16 88.6 128 42.2
Duzib212G0604 Durio zibethinus HOM05D001874 ORTHO05D002166 2.9e-16 88.2 127 41.7
Haze_14992 Corylus avellana HOM05D001874 ORTHO05D002166 5.0e-16 87.4 127 43.3
Thhalv10005280m.g Eutrema salsugineum HOM05D001874 ORTHO05D002166 5.0e-16 87.4 128 43.8
Sp2g15760 Schrenkiella parvula HOM05D001874 ORTHO05D002166 5.0e-16 87.4 128 43.8
Thecc.04G053000 Theobroma cacao HOM05D001874 ORTHO05D002166 6.5e-16 87.0 127 41.7
CiPaw.03G000100 Carya illinoinensis HOM05D001874 ORTHO05D002166 8.5e-16 86.7 127 43.3
Actinidia37704 Actinidia chinensis HOM05D001874 ORTHO05D002166 1.1e-15 86.3 128 39.8
Dinv25609 Davidia involucrata HOM05D001874 ORTHO05D002166 1.1e-15 86.3 128 40.6
Hma1.2p1_0868F.1_g230400 Hydrangea macrophylla HOM05D001874 ORTHO05D002166 1.1e-15 86.3 128 41.4
Nitab4.5_0009395g0010 Nicotiana tabacum HOM05D001874 ORTHO05D002166 1.1e-15 86.3 128 39.8
COL.COLO4_13412 Corchorus olitorius HOM05D001874 ORTHO05D002166 1.5e-15 85.9 127 40.9
Gohir.A10G126550 Gossypium hirsutum HOM05D001874 ORTHO05D002166 1.5e-15 85.9 127 40.9
Gohir.D10G140100 Gossypium hirsutum HOM05D001874 ORTHO05D002166 1.5e-15 85.9 127 40.9
Gorai.011G155800 Gossypium raimondii HOM05D001874 ORTHO05D002166 1.5e-15 85.9 127 40.9
Cfa007129 Carpinus fangiana HOM05D001874 ORTHO05D002166 1.9e-15 85.5 127 42.5
Cc07_g01410 Coffea canephora HOM05D001874 ORTHO05D002166 1.9e-15 85.5 128 39.1
Potri.014G140700 Populus trichocarpa HOM05D001874 ORTHO05D002166 2.5e-15 85.1 127 41.7
Sabra14G0106100 Salix brachista HOM05D001874 ORTHO05D002166 2.5e-15 85.1 127 41.7
CANSAT64G2317 Cannabis sativa HOM05D001874 ORTHO05D002166 3.2e-15 84.7 60 68.3
arahy.Tifrunner.gnm1.ann1.KT7N93 Arachis hypogaea HOM05D001874 ORTHO05D002166 4.2e-15 84.3 67 62.7
arahy.Tifrunner.gnm1.ann1.RBX16R Arachis hypogaea HOM05D001874 ORTHO05D002166 4.2e-15 84.3 67 62.7
MELO3C014751.2 Cucumis melo HOM05D001874 ORTHO05D002166 4.2e-15 84.3 127 41.7
CsaV3_3G020120 Cucumis sativus L. HOM05D001874 ORTHO05D002166 4.2e-15 84.3 127 41.7
CSS0042189 Camellia sinensis var. sinensis HOM05D001874 ORTHO05D002166 5.5e-15 84.0 60 68.3
CSS0049078 Camellia sinensis var. sinensis HOM05D001874 ORTHO05D002166 5.5e-15 84.0 60 68.3
Ca_08240_v3 Cicer arietinum L. HOM05D001874 ORTHO05D002166 7.2e-15 83.6 60 68.3
Glyma.16G044800 Glycine max HOM05D001874 ORTHO05D002166 7.2e-15 83.6 60 68.3
Glyma.19G106900 Glycine max HOM05D001874 ORTHO05D002166 7.2e-15 83.6 60 68.3
Oeu040092.1 Olea europaea HOM05D001874 ORTHO05D002166 7.2e-15 83.6 67 62.7
Phvul.001G098000 Phaseolus vulgaris HOM05D001874 ORTHO05D002166 7.2e-15 83.6 60 68.3
SalBow8G1324 Salvia bowleyana HOM05D001874 ORTHO05D002166 7.2e-15 83.6 67 62.7
SGA_v2.0_scaffold223G42829 Striga asiatica HOM05D001874 ORTHO05D002166 7.2e-15 83.6 67 62.7
VMungo1383G1741 Vigna mungo HOM05D001874 ORTHO05D002166 7.2e-15 83.6 60 68.3
Actinidia19539 Actinidia chinensis HOM05D001874 ORTHO05D002166 9.4e-15 83.2 128 39.8
ClCG05G012420 Citrullus lanatus HOM05D001874 ORTHO05D002166 1.6e-14 82.4 127 40.9
Lj1g0026985 Lotus japonicus HOM05D001874 ORTHO05D002166 1.6e-14 82.4 60 66.7
Medtr7g084810 Medicago truncatula HOM05D001874 ORTHO05D002166 1.6e-14 82.4 60 68.3
Ciclev10015815m.g Citrus clementina HOM05D001874 ORTHO05D002166 2.1e-14 82.0 127 40.2
Lalb_Chr24g0403031 Lupinus albus HOM05D001874 ORTHO05D002166 2.1e-14 82.0 67 62.7
QL02p068113 Quercus lobata HOM05D001874 ORTHO05D002166 2.1e-14 82.0 60 66.7
PGSC0003DMG400009907 Solanum tuberosum HOM05D001874 ORTHO05D002166 2.7e-14 81.6 129 39.5
SGA_v2.0_scaffold1G00220 Striga asiatica HOM05D001874 ORTHO05D002166 2.7e-14 81.6 76 52.6
Aqoxy5G02949 Aquilegia oxysepala HOM05D001874 ORTHO05D002166 3.6e-14 81.3 128 41.4
TAR636G0637 Trochodendron aralioides HOM05D001874 ORTHO05D002166 3.6e-14 81.3 127 41.7
Atru.chr6.2741 Acer truncatum HOM05D001874 ORTHO05D002166 4.7e-14 80.9 127 39.4
Nn3g16189 Nelumbo nucifera HOM05D001874 ORTHO05D002166 4.7e-14 80.9 67 61.2
Sopen04g036080 Solanum pennellii HOM05D001874 ORTHO05D002166 4.7e-14 80.9 129 38.8
TAR374G1430 Trochodendron aralioides HOM05D001874 ORTHO05D002166 4.7e-14 80.9 60 65.0
Lsat_1_v5_gn_2_95200 Lactuca sativa HOM05D001874 ORTHO05D002166 6.1e-14 80.5 60 65.0
FvH4_6g54470 Fragaria vesca HOM05D001874 ORTHO05D002166 8.0e-14 80.1 124 41.1
FAN14G4833 Fragaria x ananassa HOM05D001874 ORTHO05D002166 8.0e-14 80.1 124 41.1
Solyc04g082470.3 Solanum lycopersicum HOM05D001874 ORTHO05D002166 1.0e-13 79.7 129 38.0
TWI34G1897 Tripterygium wilfordii HOM05D001874 ORTHO05D002166 1.0e-13 79.7 67 61.2
TPR.G20661 Trifolium pratense HOM05D001874 ORTHO05D002166 1.4e-13 79.3 60 65.0
BraA01t03427Z Brassica rapa HOM05D001874 ORTHO05D002166 1.8e-13 79.0 138 37.7
Eucgr.I01562 Eucalyptus grandis HOM05D001874 ORTHO05D002166 1.8e-13 79.0 146 34.9
MSTRG.7517 Avicennia marina HOM05D001874 ORTHO05D002166 2.3e-13 78.6 67 61.2
FAN02G2214 Fragaria x ananassa HOM05D001874 ORTHO05D002166 2.3e-13 78.6 57 68.4
FAN05G5250 Fragaria x ananassa HOM05D001874 ORTHO05D002166 2.3e-13 78.6 57 68.4
FAN09G4781 Fragaria x ananassa HOM05D001874 ORTHO05D002166 2.3e-13 78.6 57 68.4
Lalb_Chr14g0364201 Lupinus albus HOM05D001874 ORTHO05D002166 2.3e-13 78.6 67 59.7
Prupe.3G315600 Prunus persica HOM05D001874 ORTHO05D002166 2.3e-13 78.6 57 68.4
RcHm_v2.0_Chr2g0176751 Rosa chinensis HOM05D001874 ORTHO05D002166 2.3e-13 78.6 57 68.4
vmacro22929 Vaccinium macrocarpon HOM05D001874 ORTHO05D002166 2.3e-13 78.6 61 65.6
TWI32G0051 Tripterygium wilfordii HOM05D001874 ORTHO05D002166 3.0e-13 78.2 67 59.7
Rhsim08G0037100 Rhododendron simsii HOM05D001874 ORTHO05D002166 4.0e-13 77.8 61 65.6
MBI11_g13140_MAGBIO Magnolia biondii HOM05D001874 ORTHO05D002166 5.2e-13 77.4 67 58.2
MBI11_g40921_MAGBIO Magnolia biondii HOM05D001874 ORTHO05D002166 5.2e-13 77.4 67 58.2
MSTRG.16270 Avicennia marina HOM05D001874 ORTHO05D002166 6.8e-13 77.0 67 58.2
MD09G1000600 Malus domestica HOM05D001874 ORTHO05D002166 8.8e-13 76.6 62 64.5
MD09G1142200 Malus domestica HOM05D001874 ORTHO05D002166 8.8e-13 76.6 62 64.5
Gohir.A03G095400 Gossypium hirsutum HOM05D001874 ORTHO05D002166 1.2e-12 76.3 127 38.6
Gohir.D02G113700 Gossypium hirsutum HOM05D001874 ORTHO05D002166 1.2e-12 76.3 127 38.6
Gorai.005G129400 Gossypium raimondii HOM05D001874 ORTHO05D002166 1.2e-12 76.3 127 38.6
MD17G1003400 Malus domestica HOM05D001874 ORTHO05D002166 1.2e-12 76.3 62 66.1
CDE02G0080 Ceratophyllum demersum HOM05D001874 ORTHO05D002166 1.5e-12 75.9 57 64.9
PGR042G1329 Punica granatum HOM05D001874 ORTHO05D002166 1.5e-12 75.9 67 59.7
HanXRQChr07g0197981 Helianthus annuus HOM05D001874 ORTHO05D002166 3.4e-12 74.7 67 56.7
Peaxi162Scf00827g00032 Petunia axillaris HOM05D001874 ORTHO05D002166 3.4e-12 74.7 62 62.9
Sc03g0005430 Simmondsia chinensis HOM05D001874 ORTHO05D002166 3.4e-12 74.7 67 58.2
Migut.H01347 Erythranthe guttata HOM05D001874 ORTHO05D002166 5.7e-12 73.9 67 53.7
CDE09G0992 Ceratophyllum demersum HOM05D001874 ORTHO05D002166 9.7e-12 73.2 57 61.4
Sed0012223 Sechium edule HOM05D001874 ORTHO05D002166 9.7e-12 73.2 127 36.2
DCAR_016686 Daucus carota HOM05D001874 ORTHO05D002166 1.7e-11 72.4 60 58.3
Migut.M01864 Erythranthe guttata HOM05D001874 ORTHO05D002166 2.2e-11 72.0 62 58.1
SHI00495 Sapria himalayana HOM05D001874 ORTHO05D002166 1.4e-10 69.3 128 36.7
Psat3g091680 Pisum sativum HOM05D001874 ORTHO05D002166 3.1e-10 68.2 36 83.3
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 9.1e-10 66.6 31 87.1
ECA238G4071 Erigeron canadensis HOM05D001874 ORTHO05D002166 9.1e-10 66.6 53 58.5
ATR0582G331 Amborella trichopoda HOM05D001874 ORTHO05D002166 2.7e-09 65.1 52 55.8
HPP92_023103 Vanilla planifolia HOM05D001874 ORTHO05D002166 3.5e-09 64.7 111 37.8
AUR62004940 Chenopodium quinoa HOM05D001874 ORTHO05D002166 1.3e-08 62.8 73 46.6
AUR62032528 Chenopodium quinoa HOM05D001874 ORTHO05D002166 1.3e-08 62.8 73 46.6
PSO478G5161 Papaver somniferum HOM05D001874 ORTHO05D002166 2.9e-08 61.6 59 55.9
Ah.03g136520 Amaranthus hybridus HOM05D001874 ORTHO05D002166 3.8e-08 61.2 71 50.7
PSO017G4193 Papaver somniferum HOM05D001874 ORTHO05D002166 3.8e-08 61.2 59 55.9
Mapoly0161s0021 Marchantia polymorpha HOM05D001874 ORTHO05D002166 6.5e-08 60.5 60 53.3
Pp3c19_21960 Physcomitrium patens HOM05D001874 ORTHO05D002166 8.5e-08 60.1 47 59.6
Pp3c22_18860 Physcomitrium patens HOM05D001874 ORTHO05D002166 8.5e-08 60.1 47 59.6
AUR62017460 Chenopodium quinoa HOM05D001874 ORTHO05D002166 1.1e-07 59.7 63 52.4
EL10Ac6g13911 Beta vulgaris HOM05D001874 ORTHO05D002166 2.5e-07 58.5 72 45.8
CBR_g30801 Chara braunii HOM05D001874 ORTHO05D002166 3.2e-07 58.2 54 51.9
SEGI_36794 Sequoiadendron giganteum HOM05D001874 ORTHO05D002166 9.4e-07 56.6 49 53.1
DCAR_000204 Daucus carota HOM05D001874 ORTHO05D002166 1.2e-06 56.2 61 47.5
DCAR_014316 Daucus carota HOM05D001874 ORTHO05D002166 1.2e-06 56.2 61 47.5
AagrBONN_evm.TU.Sc2ySwM_228.5657 Anthoceros agrestis HOM05D001874 ORTHO05D002166 1.6e-06 55.8 48 54.2
SEGI_05077 Sequoiadendron giganteum HOM05D001874 ORTHO05D002166 2.1e-06 55.5 44 56.8
BolC8t49835H Brassica oleracea HOM05D001874 ORTHO05D002166 4.7e-06 54.3 60 48.3
Lj2C382T12 Lonicera japonica HOM05D001874 ORTHO05D002166 4.7e-06 54.3 25 92.0
ATR0820G133 Amborella trichopoda HOM05D001874 ORTHO05D002166 8.0e-06 53.5 47 53.2


User provided reference genes

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