Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 0.0e+00 3364.7 1761 100.0
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 0.0e+00 3346.2 1761 99.4
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 0.0e+00 2786.1 1801 84.6
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 0.0e+00 2782.3 1804 84.4
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 0.0e+00 2068.5 2234 58.9
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 0.0e+00 2036.5 2006 62.4
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 0.0e+00 2030.4 1998 62.5
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 0.0e+00 1949.1 2243 56.4
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 0.0e+00 1849.3 2198 54.7
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 0.0e+00 1777.3 1997 57.9
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 0.0e+00 1738.8 2009 56.2
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 0.0e+00 1703.0 2034 53.8
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 0.0e+00 1644.4 2010 52.6
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 0.0e+00 1202.2 2167 43.8
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 4.8e-303 1045.4 1434 50.9
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 8.3e-271 938.3 2135 38.9
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.3e-178 632.1 1827 36.6
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 3.6e-141 507.7 858 44.4
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 6.2e-141 506.9 866 45.8
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 2.4e-140 505.0 849 45.2
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 9.9e-139 499.6 859 46.0
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 1.7e-138 498.8 774 47.2
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 2.2e-138 498.4 754 47.9
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 5.4e-137 493.8 899 42.9
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 5.4e-137 493.8 784 47.7
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 2.7e-136 491.5 780 47.2
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 3.0e-135 488.0 780 47.8
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 4.3e-134 484.2 774 45.3
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 7.3e-134 483.4 774 46.3
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 6.2e-133 480.3 821 44.5
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 1.2e-131 476.1 768 44.7
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 2.9e-130 471.5 778 45.2
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 3.8e-130 471.1 749 45.8
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 6.4e-130 470.3 1604 31.4
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 8.4e-130 469.9 797 45.5
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.2e-129 468.0 1749 32.4
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 1.2e-128 466.1 907 42.1
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 2.1e-128 465.3 796 45.5
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 3.5e-128 464.5 777 47.2
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 4.6e-128 464.2 870 41.6
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.3e-127 462.6 776 45.6
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.8e-127 462.2 863 43.6
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 3.9e-127 461.1 846 43.1
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 8.7e-127 459.9 774 45.2
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 8.7e-127 459.9 768 45.4
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 1.9e-126 458.8 803 44.1
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 3.3e-126 458.0 783 46.0
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 1.3e-125 456.1 819 45.1
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 1.6e-125 455.7 835 42.5
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.6e-125 455.7 838 43.1
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 2.8e-125 454.9 674 48.4
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 6.2e-125 453.8 836 42.9
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 6.2e-125 453.8 835 42.4
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.4e-124 452.6 850 42.2
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 3.1e-124 451.4 1577 33.1
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 6.9e-124 450.3 780 45.3
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.4e-123 448.0 767 44.7
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 9.9e-123 446.4 780 44.1
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 3.8e-122 444.5 870 42.2
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 1.4e-121 442.6 769 45.5
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 4.2e-121 441.0 703 47.2
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 7.1e-121 440.3 888 41.4
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 3.5e-120 438.0 762 44.2
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 1.3e-119 436.0 1862 30.3
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 3.0e-119 434.9 770 43.5
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 1.5e-118 432.6 809 42.2
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 2.5e-118 431.8 887 40.6
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 9.6e-118 429.9 482 57.5
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 4.0e-116 424.5 750 44.8
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 1.7e-114 419.1 830 41.2
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 1.1e-113 416.4 861 39.4
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.1e-110 406.4 711 44.3
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 7.4e-110 403.7 827 42.9
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.8e-108 399.1 787 41.3
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 6.9e-108 397.1 758 43.0
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 1.3e-106 392.9 781 42.4
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.2e-106 392.1 856 35.7
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 1.1e-105 389.8 831 42.5
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.4e-105 389.4 834 41.2
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 9.4e-105 386.7 1413 29.9
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 2.7e-104 385.2 1114 35.8
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 1.8e-103 382.5 808 41.6
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 5.1e-103 380.9 795 41.3
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.5e-102 378.6 824 41.0
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.3e-101 376.3 788 41.6
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 5.0e-98 364.4 596 42.1
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 7.2e-97 360.5 1649 29.4
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 1.2e-96 359.8 726 40.5
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 1.0e-95 356.7 963 33.9
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 2.4e-92 345.5 787 38.9
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 3.1e-92 345.1 880 36.0
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 3.4e-91 341.7 785 38.9
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.7e-90 339.3 527 47.4
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 8.5e-90 337.0 812 37.6
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 1.1e-89 336.7 657 40.9
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.1e-89 336.7 496 42.7
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 8.0e-88 330.5 926 36.2
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 5.2e-87 327.8 575 45.2
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 2.0e-83 315.8 708 40.7
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 2.2e-82 312.4 742 38.3
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 6.5e-82 310.8 767 38.7
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 9.4e-81 307.0 610 43.4
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.6e-78 298.9 762 38.3
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 4.4e-78 298.1 780 36.4
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 3.7e-69 268.5 701 36.8
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 1.1e-68 266.9 335 52.2
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 1.4e-68 266.5 589 40.2
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 5.0e-66 258.1 613 37.5
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.0e-62 246.1 289 49.1
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 2.0e-62 246.1 790 34.7
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 5.9e-59 234.6 255 51.0
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 1.1e-52 213.8 498 37.6
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 7.0e-52 211.1 1781 24.9
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 1.6e-51 209.9 280 50.0
BraA06t24858Z Brassica rapa HOM05D000237 ORTHO05D006530 1.8e-47 196.4 243 51.9
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 3.7e-45 188.7 225 51.1
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 3.2e-44 185.7 661 33.6
BcaC04g19090 Brassica carinata HOM05D001762 ORTHO05D001774 2.7e-43 182.6 107 91.6
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 1.8e-31 143.3 145 53.1
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 1.7e-29 136.7 731 26.1
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 2.2e-29 136.3 217 37.8
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 3.0e-26 125.9 82 74.4
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.5e-25 123.6 506 32.0
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.6e-22 112.8 626 26.0
BcaB03g12812 Brassica carinata HOM05D000237 ORTHO05D006530 4.9e-21 108.6 66 90.9
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 7.8e-19 101.3 207 46.4
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 2.3e-18 99.8 207 49.3
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 1.1e-15 90.9 255 30.2
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.4e-14 85.9 118 44.1
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 1.1e-12 80.9 94 51.1
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 2.4e-12 79.7 56 64.3
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.1e-09 70.9 138 38.4
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 1.9e-09 70.1 355 26.5
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 6.2e-08 65.1 300 31.0
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 6.2e-08 65.1 251 31.9
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 8.1e-08 64.7 36 66.7
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.5e-06 60.5 131 34.4
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 7.6e-06 58.2 194 30.9


User provided reference genes

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