Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 2.3e-82 308.9 166 100.0
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 1.2e-81 306.6 166 99.4
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 1.7e-80 302.8 166 97.6
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 1.7e-80 302.8 166 97.6
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 2.9e-80 302.0 163 99.4
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 3.2e-79 298.5 167 96.4
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 1.1e-76 290.0 167 94.6
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 1.1e-76 290.0 167 94.6
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 1.5e-76 289.7 168 93.5
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 9.5e-76 287.0 169 92.9
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 9.5e-76 287.0 169 92.9
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 9.5e-76 287.0 169 92.9
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 2.8e-75 285.4 168 92.3
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 2.3e-74 282.3 168 90.5
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 5.2e-74 281.2 168 91.1
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 8.9e-74 280.4 168 90.5
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 8.9e-74 280.4 168 90.5
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 1.5e-73 279.6 168 89.9
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 1.5e-73 279.6 168 89.9
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 1.5e-73 279.6 168 89.9
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 3.0e-69 265.4 169 83.4
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 5.1e-69 264.6 168 83.9
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 5.1e-69 264.6 168 85.7
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 8.6e-69 263.8 168 83.9
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 5.4e-63 244.6 170 77.6
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 1.2e-62 243.4 171 75.4
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 1.2e-62 243.4 171 75.4
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 1.6e-62 243.0 171 75.4
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.6e-62 243.0 169 76.3
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 2.7e-62 242.3 168 76.8
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 2.7e-62 242.3 171 74.9
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 2.7e-62 242.3 171 76.6
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 4.6e-62 241.5 170 76.5
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 3.9e-61 238.4 167 78.4
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 2.5e-60 235.7 172 74.4
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 3.3e-60 235.3 172 75.6
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 7.3e-60 234.2 167 74.3
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 1.6e-59 233.0 167 74.3
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 2.1e-59 232.6 172 72.7
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 4.7e-59 231.5 164 75.0
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.4e-58 229.9 171 74.3
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 3.1e-58 228.8 167 73.1
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 4.0e-58 228.4 166 72.3
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 5.2e-58 228.0 168 72.6
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 1.2e-57 226.9 168 71.4
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 1.2e-57 226.9 167 73.1
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 3.4e-57 225.3 167 70.1
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 4.4e-57 224.9 169 71.0
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 5.8e-57 224.6 168 71.4
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 7.6e-57 224.2 168 69.6
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.7e-56 223.0 167 70.7
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 1.7e-56 223.0 167 70.7
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 1.7e-56 223.0 169 68.0
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 3.8e-56 221.9 168 69.6
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 3.8e-56 221.9 168 70.2
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 3.8e-56 221.9 168 70.2
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 6.4e-56 221.1 169 70.4
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 8.4e-56 220.7 167 70.7
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 8.4e-56 220.7 169 68.0
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 8.4e-56 220.7 168 68.5
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 1.1e-55 220.3 169 72.2
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 1.1e-55 220.3 168 70.2
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 1.1e-55 220.3 167 70.7
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 1.1e-55 220.3 169 68.6
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 1.1e-55 220.3 168 69.6
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 1.4e-55 219.9 167 71.3
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 1.9e-55 219.5 171 71.3
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.9e-55 219.5 168 71.4
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.9e-55 219.5 169 69.2
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 4.2e-55 218.4 171 70.8
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 5.4e-55 218.0 168 69.0
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 5.4e-55 218.0 167 69.5
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 7.1e-55 217.6 168 68.5
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 7.1e-55 217.6 169 69.2
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 9.3e-55 217.2 167 70.1
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 9.3e-55 217.2 167 69.5
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 1.2e-54 216.9 166 66.3
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.6e-54 216.5 168 68.5
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 1.6e-54 216.5 169 68.0
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.1e-54 216.1 168 67.9
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.1e-54 216.1 168 70.2
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 2.1e-54 216.1 167 68.3
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 3.5e-54 215.3 166 65.7
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 4.6e-54 214.9 168 68.5
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 6.0e-54 214.5 167 69.5
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 7.8e-54 214.2 172 68.0
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 7.8e-54 214.2 167 67.1
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 7.8e-54 214.2 168 67.3
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.3e-53 213.4 168 67.3
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.3e-53 213.4 169 67.5
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.7e-53 213.0 162 68.5
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 1.7e-53 213.0 170 66.5
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 1.7e-53 213.0 167 67.7
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 1.7e-53 213.0 167 67.1
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 2.3e-53 212.6 169 66.3
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 2.3e-53 212.6 167 67.1
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.0e-53 212.2 170 68.8
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 3.9e-53 211.8 169 68.6
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 5.1e-53 211.5 170 67.1
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 1.1e-52 210.3 167 65.9
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 1.1e-52 210.3 166 68.7
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.5e-52 209.9 167 65.9
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 1.5e-52 209.9 171 69.0
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.5e-52 209.9 169 66.3
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.9e-52 209.5 168 69.0
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 2.5e-52 209.1 169 65.7
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 5.6e-52 208.0 164 68.9
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 7.3e-52 207.6 171 65.5
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.3e-51 206.8 163 66.9
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.6e-51 206.5 171 67.8
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 2.8e-51 205.7 161 67.1
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 3.6e-51 205.3 168 67.3
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 4.8e-51 204.9 169 63.9
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 1.1e-50 203.8 166 65.7
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 1.1e-50 203.8 168 65.5
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 1.8e-50 203.0 169 63.3
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 2.4e-50 202.6 169 64.5
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 4.0e-50 201.8 168 64.3
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 5.3e-50 201.4 173 66.5
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 6.9e-50 201.1 170 65.9
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.2e-49 200.3 163 63.8
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.5e-49 199.9 167 63.5
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 2.0e-49 199.5 167 65.3
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 9.9e-49 197.2 153 69.9
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 1.7e-48 196.4 168 65.5
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 2.9e-48 195.7 169 63.3
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 4.9e-48 194.9 168 64.9
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 8.4e-48 194.1 156 65.4
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.2e-46 190.3 162 63.0
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 1.6e-46 189.9 170 62.4
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 3.5e-46 188.7 161 65.2
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 4.6e-46 188.3 169 62.7
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 6.0e-46 188.0 171 60.8
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 6.0e-46 188.0 171 60.8
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 3.9e-45 185.3 171 60.8
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.1e-44 183.7 169 60.4
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 1.5e-44 183.3 167 59.9
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 1.1e-42 177.2 167 61.7
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.4e-42 176.8 102 80.4
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 9.0e-42 174.1 102 79.4
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 1.2e-41 173.7 168 60.7
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 2.1e-38 162.9 99 74.7
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 2.1e-38 162.9 143 65.0
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 3.5e-38 162.2 167 59.3
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 3.5e-38 162.2 176 52.3
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 7.9e-38 161.0 100 74.0
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.0e-32 144.1 145 56.6
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 6.5e-32 141.4 175 48.6
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.1e-31 140.6 171 47.4
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.4e-31 140.2 173 46.2
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 4.2e-31 138.7 217 42.9
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 4.3e-28 128.6 171 42.7
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 5.7e-28 128.3 174 42.5
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 2.8e-27 125.9 146 52.7
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 1.1e-26 124.0 114 57.0
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.8e-25 118.2 70 77.1
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 2.2e-24 116.3 117 50.4
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.8e-24 115.5 70 75.7
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 8.4e-24 114.4 167 43.1
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 4.2e-23 112.1 173 43.9
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 3.1e-18 95.9 179 41.9
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.1e-18 95.5 67 68.7
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 7.2e-15 84.7 67 58.2
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 5.1e-13 78.6 44 79.5


User provided reference genes

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