Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 6.7e-30 133.3 63 100.0
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 6.7e-30 133.3 63 100.0
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 2.7e-23 111.3 55 90.9
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 2.7e-23 111.3 55 92.7
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 7.9e-23 109.8 60 81.7
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 1.9e-21 105.1 59 76.3
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 1.9e-21 105.1 59 76.3
BcaC01g06364 Brassica carinata HOM05D004186 ORTHO05D011383 2.1e-20 101.7 53 88.7
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 3.7e-20 100.9 55 80.0
C03p16540 Brassica napus HOM05D004186 ORTHO05D011383 4.8e-20 100.5 53 86.8
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 8.2e-20 99.8 55 78.2
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 2.6e-18 94.7 56 75.0
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 3.8e-17 90.9 56 73.2
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 3.8e-17 90.9 56 73.2
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 5.0e-17 90.5 56 71.4
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 5.0e-17 90.5 56 71.4
BolC7t45165H Brassica oleracea HOM05D001159 ORTHO05D011383 8.5e-17 89.7 56 73.2
C08p01710 Brassica napus HOM05D002592 ORTHO05D011383 1.4e-16 89.0 44 93.2
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 2.5e-16 88.2 55 72.7
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 9.3e-16 86.3 56 71.4
BcaC07g36866 Brassica carinata HOM05D012015 ORTHO05D011383 1.2e-15 85.9 42 95.2
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 2.7e-15 84.7 57 68.4
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 1.3e-14 82.4 55 69.1
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.3e-14 82.4 55 67.3
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 1.3e-14 82.4 55 69.1
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 1.3e-14 82.4 55 67.3
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 3.9e-14 80.9 55 65.5
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 8.7e-14 79.7 55 63.6
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 3.3e-13 77.8 56 64.3
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 3.7e-12 74.3 55 61.8
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 3.7e-12 74.3 56 60.7
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 6.3e-12 73.6 50 62.0
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 8.2e-12 73.2 50 62.0
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 8.2e-12 73.2 50 62.0
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 1.4e-11 72.4 48 64.6
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 1.8e-11 72.0 55 56.4
BcaC01g06358 Brassica carinata HOM05D004186 ORTHO05D011383 2.4e-11 71.6 33 90.9
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 3.1e-11 71.2 53 56.6
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 3.1e-11 71.2 58 58.6
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 6.9e-11 70.1 55 56.4
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 1.2e-10 69.3 55 56.4
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.2e-10 69.3 55 54.5
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.0e-10 68.6 50 56.0
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 2.6e-10 68.2 55 52.7
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.6e-10 68.2 55 52.7
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.6e-10 68.2 55 52.7
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 2.6e-10 68.2 56 57.1
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 3.4e-10 67.8 50 56.0
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 4.5e-10 67.4 55 52.7
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 5.9e-10 67.0 55 52.7
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 7.7e-10 66.6 56 58.9
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 1.0e-09 66.2 55 54.5
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 1.3e-09 65.9 56 51.8
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.3e-09 65.9 58 55.2
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 1.7e-09 65.5 52 55.8
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 1.7e-09 65.5 55 52.7
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 2.2e-09 65.1 56 55.4
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 2.2e-09 65.1 56 55.4
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 2.2e-09 65.1 55 54.5
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 3.8e-09 64.3 55 54.5
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.0e-09 63.9 51 56.9
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 5.0e-09 63.9 51 56.9
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 5.0e-09 63.9 58 53.4
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 8.5e-09 63.2 58 58.6
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 8.5e-09 63.2 53 52.8
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.1e-08 62.8 61 54.1
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.1e-08 62.8 61 54.1
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.4e-08 62.4 50 52.0
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.9e-08 62.0 56 48.2
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 2.5e-08 61.6 55 52.7
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 2.5e-08 61.6 55 50.9
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 2.5e-08 61.6 55 49.1
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 3.2e-08 61.2 56 53.6
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 4.2e-08 60.8 55 45.5
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 5.5e-08 60.5 55 50.9
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 5.5e-08 60.5 55 54.5
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 7.2e-08 60.1 55 49.1
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 7.2e-08 60.1 55 49.1
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 9.4e-08 59.7 55 49.1
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 9.4e-08 59.7 55 50.9
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 9.4e-08 59.7 57 50.9
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 9.4e-08 59.7 56 46.4
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 1.2e-07 59.3 55 49.1
Lsat_1_v5_gn_9_37000 Lactuca sativa HOM05D004186 ORTHO05D011383 1.6e-07 58.9 61 47.5
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 3.6e-07 57.8 55 50.9
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 3.6e-07 57.8 55 50.9
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 3.6e-07 57.8 55 45.5
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 3.6e-07 57.8 50 54.0
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 3.6e-07 57.8 59 47.5
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 4.6e-07 57.4 52 51.9
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 4.6e-07 57.4 55 45.5
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 4.6e-07 57.4 37 59.5
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 4.6e-07 57.4 50 56.0
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 4.6e-07 57.4 50 56.0
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 6.1e-07 57.0 57 47.4
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 1.0e-06 56.2 57 45.6
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.0e-06 56.2 57 49.1
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 1.4e-06 55.8 57 49.1
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 1.4e-06 55.8 57 49.1
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.8e-06 55.5 51 51.0
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 2.3e-06 55.1 55 50.9
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 2.3e-06 55.1 56 48.2
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 3.0e-06 54.7 57 49.1
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 3.0e-06 54.7 55 50.9
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 3.9e-06 54.3 57 49.1
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 5.1e-06 53.9 56 44.6


User provided reference genes

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