Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p16850 Brassica napus HOM05D003358 ORTHO05D003864 1.4e-99 366.3 183 100.0
BolC8t49311H Brassica oleracea HOM05D003358 ORTHO05D003864 2.3e-91 339.0 200 87.0
BolC8t49309H Brassica oleracea HOM05D003358 ORTHO05D003864 3.4e-90 335.1 200 86.0
BcaB03g13087 Brassica carinata HOM05D003358 ORTHO05D003864 5.7e-82 307.8 198 79.3
BcaC07g38754 Brassica carinata HOM05D003358 ORTHO05D003864 2.4e-80 302.4 162 94.4
A08p31850 Brassica napus HOM05D003358 ORTHO05D003864 1.5e-69 266.5 176 77.8
BolC8t49305H Brassica oleracea HOM05D003358 ORTHO05D003864 2.9e-57 225.7 201 60.7
BcaC07g38753 Brassica carinata HOM05D003358 ORTHO05D003864 1.2e-55 220.3 193 63.2
C08p16840 Brassica napus HOM05D003358 ORTHO05D003864 1.2e-55 220.3 193 63.2
Carub.0001s1424 Capsella rubella HOM05D003358 ORTHO05D003864 2.7e-31 139.4 196 43.4
BolC8t49308H Brassica oleracea HOM05D003358 ORTHO05D003864 1.0e-30 137.5 69 97.1
AL1G26440 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 2.5e-29 132.9 202 41.1
C03p05710 Brassica napus HOM05D003358 ORTHO05D003864 9.6e-29 131.0 192 43.8
A08p31860 Brassica napus HOM05D003358 ORTHO05D003864 7.6e-26 121.3 106 56.6
AL1G26420 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.9e-21 106.7 195 33.3
BolC3t13084H Brassica oleracea HOM05D003358 ORTHO05D003864 3.4e-18 95.9 150 43.3
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 4.9e-17 92.0 196 34.7
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 4.9e-17 92.0 185 35.1
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 2.5e-16 89.7 194 34.5
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 3.2e-16 89.4 197 35.0
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 1.6e-15 87.0 194 33.5
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 2.7e-15 86.3 206 34.5
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.7e-15 86.3 191 34.6
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 2.7e-15 86.3 204 34.3
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 3.5e-15 85.9 189 33.3
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 3.5e-15 85.9 196 34.7
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 4.6e-15 85.5 194 33.5
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 4.6e-15 85.5 196 34.7
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 7.9e-15 84.7 198 34.3
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.0e-14 84.3 190 34.7
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 1.0e-14 84.3 189 33.9
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 1.3e-14 84.0 204 33.3
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 1.3e-14 84.0 193 33.7
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 1.3e-14 84.0 204 34.8
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.3e-14 84.0 204 34.8
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.3e-14 84.0 204 34.8
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 1.3e-14 84.0 204 34.8
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 1.8e-14 83.6 189 36.5
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 1.8e-14 83.6 206 34.0
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 1.8e-14 83.6 204 34.3
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 1.8e-14 83.6 189 33.9
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 1.8e-14 83.6 192 33.9
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 1.8e-14 83.6 204 33.8
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 1.8e-14 83.6 189 33.9
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 3.0e-14 82.8 186 33.9
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 3.0e-14 82.8 186 33.3
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 3.0e-14 82.8 189 33.9
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 3.0e-14 82.8 183 32.2
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 3.0e-14 82.8 190 35.3
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 3.9e-14 82.4 189 33.3
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 3.9e-14 82.4 189 33.3
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 3.9e-14 82.4 192 33.3
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 3.9e-14 82.4 187 33.2
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 3.9e-14 82.4 194 33.0
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 3.9e-14 82.4 194 33.0
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 3.9e-14 82.4 194 33.0
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 3.9e-14 82.4 197 32.0
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 5.1e-14 82.0 190 33.7
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 5.1e-14 82.0 186 33.3
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 6.7e-14 81.6 191 33.5
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 8.7e-14 81.3 186 33.3
C03p05670 Brassica napus HOM05D003358 ORTHO05D003864 1.1e-13 80.9 174 33.3
BolC3t13079H Brassica oleracea HOM05D003358 ORTHO05D003864 1.1e-13 80.9 174 33.3
CAN.G1682.14 Capsicum annuum HOM05D003358 ORTHO05D003864 1.1e-13 80.9 206 34.0
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 1.1e-13 80.9 185 34.6
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 1.1e-13 80.9 192 32.3
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 1.1e-13 80.9 192 32.3
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 1.5e-13 80.5 186 32.8
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.5e-13 80.5 192 32.8
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 1.5e-13 80.5 191 32.5
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 1.9e-13 80.1 190 33.7
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 1.9e-13 80.1 186 32.8
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 1.9e-13 80.1 190 33.7
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 1.9e-13 80.1 190 33.7
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 1.9e-13 80.1 190 34.2
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 2.5e-13 79.7 190 32.1
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 2.5e-13 79.7 191 33.5
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 3.3e-13 79.3 192 33.3
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 3.3e-13 79.3 190 33.2
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 4.3e-13 79.0 192 31.8
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 4.3e-13 79.0 190 32.1
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 4.3e-13 79.0 191 31.9
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 4.3e-13 79.0 193 33.7
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 4.3e-13 79.0 193 31.1
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 4.3e-13 79.0 192 32.3
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 5.7e-13 78.6 191 31.9
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 5.7e-13 78.6 191 31.9
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 5.7e-13 78.6 193 33.7
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 5.7e-13 78.6 189 31.7
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 7.4e-13 78.2 198 32.3
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 7.4e-13 78.2 191 32.5
BraA03t09834Z Brassica rapa HOM05D003358 ORTHO05D003864 7.4e-13 78.2 174 32.2
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 7.4e-13 78.2 190 33.2
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 7.4e-13 78.2 192 31.8
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 9.7e-13 77.8 192 32.8
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 9.7e-13 77.8 192 32.8
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 9.7e-13 77.8 193 34.2
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 9.7e-13 77.8 192 31.8
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 9.7e-13 77.8 192 32.3
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 1.3e-12 77.4 191 31.4
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 1.3e-12 77.4 191 31.9
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 1.3e-12 77.4 191 31.4
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 1.3e-12 77.4 191 31.9
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 1.3e-12 77.4 186 32.8
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 1.3e-12 77.4 197 32.0
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 1.3e-12 77.4 220 31.8
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 1.3e-12 77.4 185 32.4
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 1.6e-12 77.0 186 32.3
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 1.6e-12 77.0 191 31.9
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 1.6e-12 77.0 192 32.3
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 2.2e-12 76.6 191 31.9
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 2.8e-12 76.3 206 31.1
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 3.7e-12 75.9 193 31.6
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 3.7e-12 75.9 185 31.9
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 4.8e-12 75.5 190 31.1
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 4.8e-12 75.5 190 31.1
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 4.8e-12 75.5 180 32.8
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 4.8e-12 75.5 205 30.2
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 6.3e-12 75.1 190 30.5
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 6.3e-12 75.1 194 30.4
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 8.2e-12 74.7 182 31.9
Gohir.D11G124766 Gossypium hirsutum HOM05D003358 ORTHO05D003864 8.2e-12 74.7 181 33.7
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 1.1e-11 74.3 184 32.6
Migut.N02149 Erythranthe guttata HOM05D003358 ORTHO05D003864 1.1e-11 74.3 192 30.2
Medtr1g089940 Medicago truncatula HOM05D003358 ORTHO05D003864 1.4e-11 73.9 207 30.9
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 1.4e-11 73.9 185 30.3
A09p54880 Brassica napus HOM05D003358 ORTHO05D003864 2.4e-11 73.2 185 31.9
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 2.4e-11 73.2 191 31.4
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 4.1e-11 72.4 198 30.8
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 9.0e-11 71.2 191 31.9
Duzib211G0202 Durio zibethinus HOM05D003358 ORTHO05D003864 9.0e-11 71.2 176 31.8
Medtr7g094290 Medicago truncatula HOM05D003358 ORTHO05D003864 9.0e-11 71.2 186 30.6
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 1.2e-10 70.9 203 28.6
BcaB01g05487 Brassica carinata HOM05D011503 ORTHO05D003864 1.5e-10 70.5 105 37.1
MD11G1291000 Malus domestica HOM05D003358 ORTHO05D003864 1.5e-10 70.5 199 28.1
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 1.5e-10 70.5 184 30.4
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 2.0e-10 70.1 176 30.7
CSS0028362 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 3.4e-10 69.3 181 31.5
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 3.4e-10 69.3 207 31.9
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 4.5e-10 68.9 174 31.0
A04p00330 Brassica napus HOM05D003358 ORTHO05D003864 5.9e-10 68.6 198 29.8
BraA04t15751Z Brassica rapa HOM05D003358 ORTHO05D003864 7.7e-10 68.2 198 29.3
Prupe.8G246300 Prunus persica HOM05D003358 ORTHO05D003864 1.0e-09 67.8 230 29.1
AL1G26480 Arabidopsis lyrata HOM05D003358 ORTHO05D013743 2.2e-09 66.6 179 30.2
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 2.2e-09 66.6 198 29.3
Migut.N02147 Erythranthe guttata HOM05D003358 ORTHO05D003864 2.9e-09 66.2 185 28.6
BcaC07g42712 Brassica carinata HOM05D003358 ORTHO05D003864 3.8e-09 65.9 171 30.4
Thhalv10024073m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 3.8e-09 65.9 202 28.7
Medtr1g089960 Medicago truncatula HOM05D003358 ORTHO05D003864 8.5e-09 64.7 219 29.7
C03p05700 Brassica napus HOM05D011503 ORTHO05D013743 2.5e-08 63.2 156 30.1
BolC3t13082H Brassica oleracea HOM05D011503 ORTHO05D013743 2.5e-08 63.2 156 30.1
A03p04950 Brassica napus HOM05D011503 ORTHO05D013743 4.2e-08 62.4 192 28.6
BraA03t09833Z Brassica rapa HOM05D011503 ORTHO05D013743 4.2e-08 62.4 192 28.6
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 4.2e-08 62.4 157 31.2
Medtr1g089910 Medicago truncatula HOM05D003358 ORTHO05D003864 5.5e-08 62.0 202 27.2
BolC4t24547H Brassica oleracea HOM05D003358 ORTHO05D003864 7.2e-08 61.6 200 28.0
BcaC02g10340 Brassica carinata HOM05D003358 ORTHO05D003864 1.2e-07 60.8 193 28.5
C04p30150 Brassica napus HOM05D003358 ORTHO05D003864 1.2e-07 60.8 193 28.5
BcaB01g05489 Brassica carinata HOM05D011503 ORTHO05D013743 2.7e-07 59.7 82 39.0
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 2.7e-07 59.7 199 26.6
Carub.0001s1427 Capsella rubella HOM05D003358 ORTHO05D003864 3.6e-07 59.3 186 29.0
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 3.6e-07 59.3 147 30.6
Prupe.8G246200 Prunus persica HOM05D003358 ORTHO05D003864 3.6e-07 59.3 154 28.6
TPR.G13403 Trifolium pratense HOM05D003358 ORTHO05D003864 6.1e-07 58.5 173 29.5
Atru.chr9.1958 Acer truncatum HOM05D003358 ORTHO05D003864 7.9e-07 58.2 162 28.4
Migut.N02146 Erythranthe guttata HOM05D003358 ORTHO05D003864 7.9e-07 58.2 182 29.1
TAR362G0768 Trochodendron aralioides HOM05D003358 ORTHO05D003864 1.4e-06 57.4 86 38.4
BcaB01g06301 Brassica carinata HOM05D011503 ORTHO05D013743 2.3e-06 56.6 96 33.3
BcaB08g34405 Brassica carinata HOM05D011503 ORTHO05D013743 6.7e-06 55.1 93 35.5
FAN27G2094 Fragaria x ananassa HOM05D003358 ORTHO05D003864 6.7e-06 55.1 86 34.9
TPR.G36026 Trifolium pratense HOM05D003358 ORTHO05D003864 6.7e-06 55.1 88 36.4


User provided reference genes

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