Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38753 Brassica carinata HOM05D003358 ORTHO05D003864 1.6e-146 522.7 265 100.0
C08p16840 Brassica napus HOM05D003358 ORTHO05D003864 1.6e-146 522.7 265 100.0
BcaB03g13087 Brassica carinata HOM05D003358 ORTHO05D003864 1.8e-100 369.8 265 72.8
BolC8t49309H Brassica oleracea HOM05D003358 ORTHO05D003864 8.3e-98 360.9 268 72.8
BolC8t49311H Brassica oleracea HOM05D003358 ORTHO05D003864 8.3e-98 360.9 268 72.8
BolC8t49305H Brassica oleracea HOM05D003358 ORTHO05D003864 1.2e-96 357.1 269 72.1
A08p31860 Brassica napus HOM05D003358 ORTHO05D003864 2.1e-85 319.7 176 92.0
A08p31850 Brassica napus HOM05D003358 ORTHO05D003864 6.1e-85 318.2 244 71.7
BcaC07g38754 Brassica carinata HOM05D003358 ORTHO05D003864 2.3e-79 299.7 267 64.4
C08p16850 Brassica napus HOM05D003358 ORTHO05D003864 5.1e-55 218.8 193 63.2
Carub.0001s1424 Capsella rubella HOM05D003358 ORTHO05D003864 2.2e-50 203.4 254 47.6
AL1G26440 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 5.1e-47 192.2 274 44.5
C03p05710 Brassica napus HOM05D003358 ORTHO05D003864 1.3e-45 187.6 276 42.4
BolC3t13084H Brassica oleracea HOM05D003358 ORTHO05D003864 2.9e-26 123.2 183 43.2
AL1G26690 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 4.6e-24 115.9 111 52.3
AL1G26420 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.0e-23 114.8 268 32.5
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.3e-23 114.4 275 35.6
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 1.9e-22 110.5 273 34.1
BolC8t49308H Brassica oleracea HOM05D003358 ORTHO05D003864 2.5e-22 110.2 70 82.9
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 7.4e-22 108.6 273 33.3
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 1.3e-21 107.8 275 33.5
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 2.8e-21 106.7 272 34.2
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 3.7e-21 106.3 272 32.7
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 4.8e-21 105.9 272 33.5
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 1.1e-20 104.8 271 32.5
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 1.1e-20 104.8 272 33.8
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 1.1e-20 104.8 250 35.2
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 1.4e-20 104.4 271 32.8
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 1.4e-20 104.4 277 31.8
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 1.8e-20 104.0 272 33.5
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.8e-20 104.0 272 33.5
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.8e-20 104.0 272 33.5
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.8e-20 104.0 272 33.5
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 1.8e-20 104.0 272 32.7
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 3.1e-20 103.2 272 32.7
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 4.1e-20 102.8 252 34.1
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 5.3e-20 102.4 268 33.2
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 5.3e-20 102.4 272 32.4
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 5.3e-20 102.4 272 33.1
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 6.9e-20 102.1 258 34.9
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 6.9e-20 102.1 271 31.7
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.2e-19 101.3 279 33.3
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.2e-19 101.3 280 34.3
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 1.2e-19 101.3 267 33.3
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 1.2e-19 101.3 273 33.0
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 1.2e-19 101.3 246 35.0
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 2.0e-19 100.5 274 31.4
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 2.6e-19 100.1 241 33.6
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 2.6e-19 100.1 268 32.8
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 3.4e-19 99.8 270 30.4
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 3.4e-19 99.8 273 31.9
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 4.5e-19 99.4 238 34.0
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 4.5e-19 99.4 273 30.0
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 5.9e-19 99.0 238 33.6
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 5.9e-19 99.0 238 33.6
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 5.9e-19 99.0 268 33.2
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 5.9e-19 99.0 276 33.0
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 5.9e-19 99.0 276 33.0
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 5.9e-19 99.0 276 33.0
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 5.9e-19 99.0 268 32.5
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 5.9e-19 99.0 272 32.4
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 5.9e-19 99.0 255 31.4
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 5.9e-19 99.0 271 31.4
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 7.7e-19 98.6 273 33.0
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 7.7e-19 98.6 275 30.2
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 7.7e-19 98.6 269 32.3
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 7.7e-19 98.6 275 32.0
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 7.7e-19 98.6 276 31.9
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 7.7e-19 98.6 271 30.6
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 1.0e-18 98.2 267 30.3
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 1.0e-18 98.2 263 33.5
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 1.3e-18 97.8 270 32.6
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 1.3e-18 97.8 241 32.8
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 1.7e-18 97.4 268 32.1
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 1.7e-18 97.4 273 31.9
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 1.7e-18 97.4 274 32.5
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 2.2e-18 97.1 272 32.7
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 2.2e-18 97.1 245 33.1
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 2.2e-18 97.1 255 33.7
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 2.2e-18 97.1 272 31.6
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 2.2e-18 97.1 264 30.7
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 2.9e-18 96.7 270 32.2
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 2.9e-18 96.7 270 32.2
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 2.9e-18 96.7 273 31.5
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 2.9e-18 96.7 273 31.5
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 2.9e-18 96.7 273 31.5
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 3.8e-18 96.3 278 33.5
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 3.8e-18 96.3 223 35.0
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 3.8e-18 96.3 240 33.3
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 3.8e-18 96.3 277 32.9
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 3.8e-18 96.3 273 31.5
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 3.8e-18 96.3 273 31.9
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 6.5e-18 95.5 223 34.5
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 6.5e-18 95.5 274 31.8
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 8.5e-18 95.1 270 32.2
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 8.5e-18 95.1 241 33.6
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 8.5e-18 95.1 265 31.3
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 8.5e-18 95.1 273 32.2
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 1.1e-17 94.7 277 31.8
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 1.1e-17 94.7 273 32.2
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 1.4e-17 94.4 252 33.7
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 1.9e-17 94.0 272 32.0
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 1.9e-17 94.0 239 35.6
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 3.2e-17 93.2 263 30.8
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 3.2e-17 93.2 254 31.9
Medtr7g094290 Medicago truncatula HOM05D003358 ORTHO05D003864 4.2e-17 92.8 259 29.3
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 4.2e-17 92.8 254 32.3
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 4.2e-17 92.8 249 32.1
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 4.2e-17 92.8 273 31.1
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 5.5e-17 92.4 267 31.1
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 5.5e-17 92.4 258 31.4
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 5.5e-17 92.4 239 35.1
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 9.4e-17 91.7 262 31.3
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 1.2e-16 91.3 254 32.3
AT1G14688 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 1.6e-16 90.9 110 47.3
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 2.1e-16 90.5 251 32.3
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 2.1e-16 90.5 288 30.2
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 2.7e-16 90.1 267 30.3
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 3.6e-16 89.7 230 34.3
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 3.6e-16 89.7 235 28.9
CAN.G1682.14 Capsicum annuum HOM05D003358 ORTHO05D003864 6.1e-16 89.0 216 34.7
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 7.9e-16 88.6 233 34.8
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 1.0e-15 88.2 217 33.2
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 1.4e-15 87.8 240 31.7
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 1.8e-15 87.4 277 30.7
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 2.3e-15 87.0 273 28.6
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 3.9e-15 86.3 254 29.1
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 8.8e-15 85.1 251 33.5
A09p54880 Brassica napus HOM05D003358 ORTHO05D003864 7.4e-14 82.0 234 32.1
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 9.7e-14 81.6 271 30.6
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 9.7e-14 81.6 258 31.8
Migut.N02149 Erythranthe guttata HOM05D003358 ORTHO05D003864 2.8e-13 80.1 237 30.0
Gorai.007G133700 Gossypium raimondii HOM05D003358 ORTHO05D003864 3.7e-13 79.7 247 31.2
A03p04980 Brassica napus HOM05D003358 ORTHO05D003864 6.3e-13 79.0 122 41.0
MD11G1291000 Malus domestica HOM05D003358 ORTHO05D003864 6.3e-13 79.0 228 29.4
Thhalv10024073m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 8.2e-13 78.6 269 29.4
Gohir.D11G124766 Gossypium hirsutum HOM05D003358 ORTHO05D003864 8.2e-13 78.6 182 36.8
BcaC07g42712 Brassica carinata HOM05D003358 ORTHO05D003864 2.4e-12 77.0 253 30.4
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 3.1e-12 76.6 262 29.8
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 4.1e-12 76.3 215 30.7
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 6.9e-12 75.5 229 29.7
FAN27G2094 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.0e-11 73.9 166 31.3
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 4.5e-11 72.8 267 28.8
Migut.N02147 Erythranthe guttata HOM05D003358 ORTHO05D003864 7.7e-11 72.0 249 28.5
Medtr1g089910 Medicago truncatula HOM05D003358 ORTHO05D003864 1.0e-10 71.6 218 27.5
BcaC02g10340 Brassica carinata HOM05D003358 ORTHO05D003864 1.3e-10 71.2 216 29.2
C03p05670 Brassica napus HOM05D003358 ORTHO05D003864 1.3e-10 71.2 245 30.6
BolC3t13079H Brassica oleracea HOM05D003358 ORTHO05D003864 1.3e-10 71.2 245 30.6
Duzib211G0202 Durio zibethinus HOM05D003358 ORTHO05D003864 1.3e-10 71.2 276 27.5
C04p30150 Brassica napus HOM05D003358 ORTHO05D003864 1.7e-10 70.9 243 29.6
BraA04t15751Z Brassica rapa HOM05D003358 ORTHO05D003864 2.2e-10 70.5 203 31.5
AL1G26480 Arabidopsis lyrata HOM05D003358 ORTHO05D013743 2.9e-10 70.1 228 28.5
A04p00330 Brassica napus HOM05D003358 ORTHO05D003864 2.9e-10 70.1 203 31.0
CSS0028362 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.9e-10 70.1 183 35.5
Medtr1g089940 Medicago truncatula HOM05D003358 ORTHO05D003864 3.8e-10 69.7 216 30.6
TAR362G0768 Trochodendron aralioides HOM05D003358 ORTHO05D003864 5.0e-10 69.3 124 35.5
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 8.5e-10 68.6 253 29.6
BolC4t24547H Brassica oleracea HOM05D003358 ORTHO05D003864 1.1e-09 68.2 245 29.4
BcaB01g06301 Brassica carinata HOM05D011503 ORTHO05D013743 5.5e-09 65.9 200 31.0
TPR.G36026 Trifolium pratense HOM05D003358 ORTHO05D003864 5.5e-09 65.9 108 37.0
Carub.0001s1427 Capsella rubella HOM05D003358 ORTHO05D003864 1.6e-08 64.3 154 31.2
Prupe.8G246300 Prunus persica HOM05D003358 ORTHO05D003864 2.1e-08 63.9 273 26.4
BraA03t09834Z Brassica rapa HOM05D003358 ORTHO05D003864 2.7e-08 63.5 240 28.8
Migut.N02146 Erythranthe guttata HOM05D003358 ORTHO05D003864 2.7e-08 63.5 226 28.8
BcaB01g05487 Brassica carinata HOM05D011503 ORTHO05D003864 3.6e-08 63.2 183 32.2
Rhsim13G0022000 Rhododendron simsii HOM05D003358 ORTHO05D003864 3.6e-08 63.2 267 28.1
C03p05700 Brassica napus HOM05D011503 ORTHO05D013743 1.1e-06 58.2 197 30.5
BolC3t13082H Brassica oleracea HOM05D011503 ORTHO05D013743 1.1e-06 58.2 197 30.5
Medtr1g089960 Medicago truncatula HOM05D003358 ORTHO05D003864 1.1e-06 58.2 241 27.8
Prupe.8G246200 Prunus persica HOM05D003358 ORTHO05D003864 2.0e-06 57.4 212 25.9
A03p04950 Brassica napus HOM05D011503 ORTHO05D013743 3.3e-06 56.6 196 30.1
BraA03t09833Z Brassica rapa HOM05D011503 ORTHO05D013743 3.3e-06 56.6 196 30.1
TPR.G13403 Trifolium pratense HOM05D003358 ORTHO05D003864 3.3e-06 56.6 219 27.9
TPR.G32824 Trifolium pratense HOM05D003358 ORTHO05D003864 3.3e-06 56.6 233 27.5
BcaB08g34405 Brassica carinata HOM05D011503 ORTHO05D013743 5.7e-06 55.8 116 32.8
Oeu011175.1 Olea europaea HOM05D000273 ORTHO05D000198 7.4e-06 55.5 171 34.5


User provided reference genes

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