Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 3.9e-106 388.3 213 100.0
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 4.3e-105 384.8 213 99.1
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 4.3e-105 384.8 213 99.1
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 2.6e-102 375.6 213 95.3
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 1.3e-101 373.2 213 93.9
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 8.4e-93 344.0 227 87.7
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 1.1e-92 343.6 226 86.3
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 3.4e-86 322.0 220 81.4
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 2.4e-79 299.3 228 77.2
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 2.4e-79 299.3 228 77.2
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 5.3e-79 298.1 226 77.4
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 5.3e-79 298.1 226 77.4
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 5.3e-79 298.1 226 77.4
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 9.0e-79 297.4 226 75.7
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 3.2e-76 288.9 220 76.4
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 3.5e-75 285.4 227 74.4
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 1.6e-72 276.6 220 75.5
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 3.7e-72 275.4 220 74.5
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.3e-69 266.9 228 69.7
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 1.1e-55 220.7 227 59.0
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 1.4e-55 220.3 226 57.5
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 1.6e-54 216.9 231 57.1
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 2.0e-54 216.5 227 59.0
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 6.5e-53 211.5 220 59.1
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 8.5e-53 211.1 227 57.3
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 8.5e-53 211.1 226 56.6
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 8.5e-53 211.1 229 57.6
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.1e-52 210.7 227 59.0
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 1.5e-52 210.3 229 57.2
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.5e-52 210.3 220 58.6
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.5e-52 209.5 227 58.1
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 3.2e-52 209.1 226 56.2
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 4.2e-52 208.8 227 59.0
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 5.5e-52 208.4 227 58.1
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 5.5e-52 208.4 221 58.4
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 1.2e-51 207.2 221 58.8
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 2.7e-51 206.1 232 57.8
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 2.7e-51 206.1 230 56.1
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 3.0e-50 202.6 222 57.2
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 3.0e-50 202.6 224 55.8
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 3.0e-50 202.6 224 55.8
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 6.7e-50 201.4 222 56.8
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 8.8e-50 201.1 222 56.3
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 2.0e-49 199.9 203 58.6
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 3.3e-49 199.1 250 52.0
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 7.5e-49 198.0 214 59.3
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 9.7e-49 197.6 219 56.2
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 9.7e-49 197.6 231 55.8
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 1.3e-48 197.2 230 57.4
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 1.3e-48 197.2 234 55.6
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 3.7e-48 195.7 208 56.2
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 4.8e-48 195.3 226 54.4
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 8.2e-48 194.5 226 55.3
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.4e-47 193.7 231 54.5
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.8e-47 193.4 208 55.3
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 4.1e-47 192.2 223 54.7
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 5.3e-47 191.8 267 48.7
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 7.0e-47 191.4 214 57.0
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 1.2e-46 190.7 211 56.9
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 3.5e-46 189.1 215 55.8
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 3.5e-46 189.1 219 58.0
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 3.5e-46 189.1 221 54.8
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 3.5e-46 189.1 215 54.9
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.0e-45 187.6 222 55.4
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.3e-45 187.2 215 56.7
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 1.3e-45 187.2 223 58.7
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 1.7e-45 186.8 235 51.9
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 3.8e-45 185.7 222 52.7
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.5e-44 183.7 221 52.9
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 1.5e-44 183.7 207 56.5
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.9e-44 183.3 232 52.2
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 2.5e-44 183.0 228 52.6
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.5e-44 183.0 218 53.2
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 4.2e-44 182.2 228 52.2
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 4.2e-44 182.2 222 55.9
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 5.5e-44 181.8 210 54.8
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 7.2e-44 181.4 228 52.2
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 9.4e-44 181.0 220 55.5
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 1.2e-43 180.6 220 53.6
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 3.6e-43 179.1 204 55.4
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 6.1e-43 178.3 223 49.8
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.0e-42 177.6 224 52.7
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 1.0e-42 177.6 216 49.5
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 3.0e-42 176.0 211 55.9
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 3.0e-42 176.0 203 52.2
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 8.8e-42 174.5 229 53.3
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 8.8e-42 174.5 213 54.0
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 1.5e-41 173.7 214 52.8
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.5e-41 173.7 213 52.1
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.5e-41 173.7 227 51.1
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 2.6e-41 172.9 226 51.8
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 3.4e-41 172.6 227 51.5
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 4.4e-41 172.2 204 55.4
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 5.7e-41 171.8 217 53.5
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 7.5e-41 171.4 237 48.1
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 3.7e-40 169.1 214 51.4
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 1.4e-39 167.2 240 47.1
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 9.1e-39 164.5 228 49.6
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.0e-37 161.0 201 51.2
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 1.3e-37 160.6 253 44.3
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 2.2e-37 159.8 212 50.0
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 8.5e-37 157.9 222 48.2
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.5e-36 156.4 225 46.7
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 2.7e-35 152.9 226 47.3
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 2.3e-34 149.8 218 48.6
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 2.3e-34 149.8 226 45.6
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 4.0e-34 149.1 260 43.5
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 4.0e-34 149.1 260 43.5
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 5.2e-34 148.7 325 37.5
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 6.8e-34 148.3 217 48.8
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 9.8e-33 144.4 227 46.7
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 1.7e-32 143.7 219 49.3
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 2.4e-31 139.8 213 44.6
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.4e-31 138.7 182 52.2
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.4e-31 138.7 182 52.2
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 9.2e-31 137.9 176 49.4
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 5.9e-30 135.2 178 50.0
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.0e-29 134.4 211 46.9
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.0e-29 134.4 211 46.9
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 2.5e-28 129.8 206 45.6
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 1.8e-26 123.6 205 45.4
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 8.9e-26 121.3 207 45.4
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 1.2e-25 120.9 140 52.9
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 1.4e-23 114.0 213 40.8
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 4.1e-23 112.5 206 40.8
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 4.6e-22 109.0 96 61.5
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 5.9e-22 108.6 164 47.0
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 8.6e-21 104.8 205 37.6
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 5.6e-20 102.1 147 48.3
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 1.2e-19 100.9 160 46.9
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 3.6e-19 99.4 92 67.4
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 1.2e-17 94.4 237 33.8
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.2e-17 94.4 313 31.6
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 2.6e-17 93.2 140 48.6
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 4.9e-16 89.0 52 86.5
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 4.9e-16 89.0 52 86.5
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 7.8e-14 81.6 84 52.4
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 2.3e-13 80.1 124 43.5
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 8.6e-13 78.2 158 41.1
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 1.3e-08 64.3 140 37.9
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.9e-08 63.2 76 48.7
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 8.3e-08 61.6 40 70.0
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 2.4e-07 60.1 63 60.3
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 3.2e-07 59.7 70 45.7
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.4e-07 58.9 42 71.4
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 7.1e-07 58.5 117 41.9
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.2e-06 57.8 42 71.4
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 1.2e-06 57.8 194 30.4
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.6e-06 57.4 81 49.4
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.1e-06 57.0 63 52.4
BolC8t50896H Brassica oleracea HOM05D014273 ORTHO05D041832 7.8e-06 55.1 40 65.0


User provided reference genes

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