Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 7.0e-229 797.0 410 100.0
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 2.8e-222 775.0 406 98.3
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 1.4e-221 772.7 406 98.3
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 9.8e-207 723.4 407 92.4
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 2.7e-204 715.3 408 91.7
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 5.2e-200 701.0 407 90.4
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 9.5e-186 653.7 408 85.0
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 4.7e-185 651.4 407 84.0
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 1.4e-184 649.8 408 84.3
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 2.4e-184 649.0 408 84.3
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 7.8e-180 634.0 406 82.8
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.4e-176 623.2 406 82.5
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 3.8e-174 615.1 405 80.2
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.1e-173 613.6 433 76.4
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 6.0e-172 607.8 406 80.5
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 2.3e-171 605.9 411 79.6
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 5.1e-171 604.7 406 78.3
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 9.9e-167 590.5 310 94.8
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.1e-161 572.8 360 81.4
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.1e-157 560.5 401 75.3
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 4.5e-151 538.5 410 71.5
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 1.3e-150 537.0 406 69.2
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 1.7e-150 536.6 404 71.8
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 3.8e-150 535.4 415 69.2
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 3.8e-150 535.4 410 70.2
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 1.4e-149 533.5 410 70.7
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.9e-149 533.1 311 83.9
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 5.5e-149 531.6 311 83.6
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 9.3e-149 530.8 413 70.0
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 2.1e-148 529.6 406 69.5
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.0e-147 527.3 397 71.5
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.3e-147 526.9 310 83.9
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 6.7e-147 524.6 392 70.7
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 6.7e-147 524.6 335 77.9
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 8.7e-147 524.2 330 79.7
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 1.5e-146 523.5 396 70.7
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 4.3e-146 521.9 392 70.7
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 5.7e-146 521.5 406 69.0
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 9.7e-146 520.8 406 68.2
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 1.6e-145 520.0 379 72.0
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 1.6e-145 520.0 408 68.9
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 2.2e-145 519.6 406 68.7
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.2e-145 519.6 315 81.3
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.8e-145 519.2 391 72.1
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 2.8e-145 519.2 315 80.6
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.8e-145 519.2 335 76.7
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 2.8e-145 519.2 408 69.4
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 3.7e-145 518.8 334 78.1
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.7e-145 518.8 313 81.5
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 4.8e-145 518.5 315 81.3
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 4.8e-145 518.5 335 76.7
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 6.3e-145 518.1 392 70.7
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 8.2e-145 517.7 409 68.5
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 8.2e-145 517.7 337 78.3
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 8.2e-145 517.7 364 72.8
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 8.2e-145 517.7 394 70.3
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.1e-144 517.3 310 81.3
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.8e-144 516.5 408 68.9
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 2.4e-144 516.2 407 68.6
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 2.4e-144 516.2 326 78.2
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 3.1e-144 515.8 310 81.3
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 3.1e-144 515.8 410 66.8
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 4.1e-144 515.4 409 68.7
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 5.3e-144 515.0 368 72.6
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 5.3e-144 515.0 333 77.5
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 5.3e-144 515.0 363 72.5
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 6.9e-144 514.6 315 81.3
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.2e-143 513.8 315 80.6
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.2e-143 513.8 310 81.6
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 3.4e-143 512.3 317 79.5
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 4.5e-143 511.9 334 76.6
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 4.5e-143 511.9 429 64.3
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 4.5e-143 511.9 389 70.7
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.0e-142 510.8 355 73.5
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.3e-142 510.4 354 73.2
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.7e-142 510.0 401 69.3
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.2e-142 509.6 403 68.0
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 5.0e-142 508.4 335 74.9
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 8.5e-142 507.7 366 72.7
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.1e-141 507.3 372 71.2
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.1e-141 507.3 371 71.7
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 1.4e-141 506.9 309 79.6
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 4.2e-141 505.4 333 76.3
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 9.4e-141 504.2 334 76.3
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 2.1e-140 503.1 314 77.1
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.9e-140 501.1 333 75.7
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.8e-139 500.0 330 74.5
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.1e-138 497.3 314 77.1
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 2.5e-138 496.1 311 77.8
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.3e-138 495.7 382 68.6
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 4.3e-138 495.4 310 78.7
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 7.4e-138 494.6 311 77.5
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 7.4e-138 494.6 297 81.1
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 9.7e-138 494.2 311 77.5
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 1.3e-137 493.8 382 68.3
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.3e-137 493.8 310 79.4
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.2e-137 493.0 311 77.5
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.8e-137 492.7 297 81.1
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 4.8e-137 491.9 395 67.3
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 4.8e-137 491.9 299 80.9
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 6.3e-137 491.5 430 62.8
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.4e-136 490.3 409 66.5
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.4e-136 490.3 409 66.5
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 5.3e-136 488.4 297 80.5
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 2.0e-135 486.5 302 78.1
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.0e-134 484.2 297 79.8
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.3e-134 483.8 407 64.6
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.3e-134 483.8 376 67.6
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.3e-134 483.8 311 75.6
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 1.7e-134 483.4 414 63.8
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 2.9e-134 482.6 409 63.6
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 3.2e-133 479.2 364 68.4
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 5.5e-133 478.4 359 68.5
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 2.7e-132 476.1 310 73.9
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 8.8e-131 471.1 299 78.9
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 4.4e-130 468.8 324 71.6
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 3.7e-129 465.7 300 77.0
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.7e-129 465.7 332 69.9
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 2.4e-128 463.0 304 72.7
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.9e-126 456.1 334 71.3
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 2.1e-124 449.9 323 72.8
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 3.6e-124 449.1 407 57.7
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 6.1e-124 448.4 311 70.7
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.1e-120 436.0 299 73.2
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.4e-114 416.0 263 78.3
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.2e-106 391.0 238 80.3
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 2.4e-104 383.3 307 63.2
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.5e-101 373.2 336 58.9
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 4.0e-99 365.9 308 62.3
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 7.8e-95 351.7 284 62.0
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 8.0e-92 341.7 199 83.4
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 6.6e-86 322.0 202 78.7
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.7e-73 280.8 305 47.5
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 6.4e-73 278.9 185 74.6
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.0e-66 257.3 309 45.0
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 2.0e-66 257.3 148 83.8
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 9.9e-66 255.0 195 71.8
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.3e-62 243.8 309 42.7
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 1.9e-61 240.7 162 82.7
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 5.6e-61 239.2 176 74.4
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 2.1e-60 237.3 195 68.2
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 4.0e-59 233.0 193 67.4
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 2.6e-58 230.3 176 72.2
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 6.6e-54 215.7 195 64.1
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.6e-52 209.9 186 61.8
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 6.7e-46 189.1 162 66.7
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 6.7e-46 189.1 162 66.7
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 3.4e-42 176.8 125 71.2
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.3e-41 174.9 193 51.3
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 4.6e-39 166.4 189 55.6
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 1.9e-32 144.4 90 77.8
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.0e-18 97.8 48 93.8
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 1.3e-17 95.1 82 63.4
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 7.2e-16 89.4 57 73.7
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 2.7e-15 87.4 66 60.6
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 4.5e-10 70.1 62 59.7
BcaB03g13286 Brassica carinata HOM05D000974 ORTHO05D091645 5.2e-06 56.6 28 96.4


User provided reference genes

Program Settings