Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1984.1 935 100.0
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1979.9 935 99.8
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1917.5 937 95.9
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1916.4 937 95.9
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1874.8 932 95.6
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1801.9 947 89.0
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1764.6 947 87.1
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1762.7 948 87.6
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1762.7 948 87.6
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1758.0 947 86.8
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1757.7 952 87.3
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1744.2 947 86.3
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1742.2 947 86.1
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1738.4 948 86.4
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1736.5 947 86.5
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1701.4 951 83.7
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1650.6 948 84.0
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1614.0 947 82.0
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1596.3 960 78.9
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1526.1 820 86.6
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1469.1 993 70.8
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1465.3 979 70.2
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1462.2 976 71.1
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1460.7 973 71.3
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1457.6 980 70.7
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1457.6 976 70.9
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1456.0 977 71.1
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1455.7 976 70.3
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1455.3 978 71.1
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1454.1 979 69.5
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1449.1 976 70.8
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1448.3 958 71.2
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1444.5 972 70.6
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1442.2 976 69.6
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1441.0 980 69.3
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1439.9 967 70.2
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1439.5 983 69.4
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1439.5 972 70.9
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1438.7 978 69.2
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1437.6 981 69.1
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1437.2 972 69.8
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1436.8 964 69.9
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1436.4 965 71.3
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1434.5 976 69.6
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1432.9 980 70.4
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1431.4 966 69.0
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1431.0 951 70.9
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1430.2 960 70.8
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1429.1 961 69.9
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1428.3 976 69.4
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1428.3 960 70.8
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1421.0 975 69.2
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1420.6 958 69.3
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1419.8 965 69.9
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1419.4 977 68.6
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1415.6 965 69.1
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1415.2 970 69.5
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1415.2 966 70.2
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1414.8 970 69.3
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1414.8 968 68.3
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1413.7 954 70.0
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1413.7 971 68.6
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1411.7 966 69.9
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1411.0 974 68.6
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1411.0 967 69.2
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1408.3 966 68.1
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1407.5 983 68.3
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1406.3 976 68.6
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1406.3 954 69.2
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1406.0 964 69.8
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1404.4 977 68.1
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1404.4 966 68.7
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1404.0 975 68.6
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1403.3 968 69.1
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1402.1 948 69.9
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1402.1 961 69.1
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1401.7 965 69.5
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1401.3 975 68.4
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1401.3 976 67.6
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1401.0 954 69.8
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1400.6 976 67.7
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1400.6 974 69.1
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1400.6 962 67.6
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1400.2 972 68.3
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1400.2 967 69.0
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1398.3 971 68.3
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1396.7 978 67.2
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1395.2 971 67.3
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1394.8 976 69.4
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1394.4 976 67.4
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1392.9 954 69.3
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1392.5 971 67.7
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1391.7 947 68.8
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1391.7 965 69.0
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1390.6 950 69.3
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1390.6 968 67.7
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1390.2 968 68.6
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1390.2 964 69.3
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1389.8 967 67.5
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1389.0 962 68.3
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1386.3 968 67.3
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1385.5 977 67.1
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1384.4 970 67.2
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1378.6 969 67.3
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1374.0 977 67.2
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1366.3 966 67.3
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1357.4 923 69.6
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1350.5 983 66.0
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1349.3 930 68.1
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1340.1 945 65.8
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1332.8 969 65.4
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1327.8 977 66.0
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1320.4 979 64.9
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1316.6 985 63.5
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1304.3 994 64.6
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1298.5 865 69.6
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1291.2 958 64.6
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1286.2 1002 62.8
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1279.2 877 68.6
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1276.2 850 70.8
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1274.2 972 62.7
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1258.8 841 69.6
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1253.8 762 74.5
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1125.9 780 68.6
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1122.8 766 69.8
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1122.5 761 69.5
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1117.4 779 66.8
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 8.8e-304 1047.0 924 55.5
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 2.8e-302 1042.0 939 54.5
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 8.0e-289 997.3 925 53.8
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.5e-287 993.0 675 68.9
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 1.3e-278 963.4 933 51.9
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.4e-272 943.3 937 50.8
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 2.5e-258 896.0 682 63.5
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 2.5e-242 842.8 896 48.8
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.9e-215 751.9 562 64.2
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.4e-184 651.0 403 73.4
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.1e-125 455.3 289 73.0
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 3.2e-104 384.0 343 56.0
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 3.3e-93 347.4 216 75.5
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 1.3e-89 335.5 413 46.0
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 1.6e-87 328.6 359 49.9
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.6e-85 321.2 202 70.3
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 2.5e-80 304.7 193 75.1
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 1.7e-73 282.0 275 53.5
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.2e-73 281.6 159 78.6
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 1.2e-66 259.2 676 29.6
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.9e-64 251.9 214 57.5
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 9.5e-64 249.6 159 69.8
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.5e-61 242.3 143 76.2
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.3e-49 202.6 956 23.7
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.1e-46 193.0 360 36.9
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 9.5e-40 169.9 172 51.2
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 1.6e-34 152.5 150 55.3
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 4.3e-32 144.4 141 47.5
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 1.2e-29 136.3 91 68.1
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.6e-29 135.2 93 73.1
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 3.5e-26 124.8 183 38.8
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 3.3e-24 118.2 86 65.1
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 3.8e-20 104.8 120 50.0
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 9.3e-19 100.1 182 33.0
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.0e-17 96.7 114 44.7
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.3e-17 96.3 108 50.9
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 2.3e-17 95.5 121 43.0
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 3.0e-17 95.1 310 27.1
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 5.3e-14 84.3 114 43.9
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 9.3e-11 73.6 57 56.1
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.9e-08 65.9 55 54.5
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.9e-08 65.9 209 31.1
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 2.8e-07 62.0 74 45.9
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 1.4e-06 59.7 48 66.7


User provided reference genes

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