Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 0.0e+00 1242.6 641 100.0
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 0.0e+00 1235.3 641 99.4
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 0.0e+00 1233.4 641 99.2
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 0.0e+00 1169.1 645 94.4
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 0.0e+00 1169.1 645 94.4
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 4.8e-309 1063.9 649 85.5
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 7.6e-307 1056.6 652 84.0
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 2.4e-284 981.9 655 77.9
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 1.3e-282 976.1 654 77.4
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 4.7e-280 967.6 651 76.8
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 5.5e-273 944.1 652 76.4
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 1.3e-269 932.9 648 75.2
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.2e-259 899.8 651 72.5
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 2.4e-244 849.0 651 68.4
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 3.5e-227 792.0 658 62.5
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 6.0e-227 791.2 645 62.2
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 5.1e-226 788.1 653 62.9
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 6.6e-226 787.7 650 62.9
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 1.6e-224 783.1 651 62.1
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 8.1e-224 780.8 656 61.9
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 6.9e-223 777.7 650 60.6
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 5.8e-222 774.6 651 61.3
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 1.4e-220 770.0 656 60.8
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.9e-220 769.6 651 60.1
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 9.3e-220 767.3 651 60.2
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 3.5e-219 765.4 651 59.8
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 1.0e-218 763.8 652 60.4
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 6.6e-218 761.1 648 60.5
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 6.6e-218 761.1 647 60.7
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 1.9e-217 759.6 652 60.1
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 6.2e-216 754.6 655 60.8
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 8.1e-216 754.2 649 59.3
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 1.1e-215 753.8 656 58.7
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 2.4e-215 752.7 647 60.4
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 3.1e-215 752.3 654 59.3
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 9.0e-215 750.7 652 59.5
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.5e-214 750.0 652 59.4
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 3.4e-214 748.8 652 59.0
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 2.2e-213 746.1 651 59.8
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 2.4e-212 742.7 642 59.5
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 3.2e-212 742.3 647 58.6
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 3.2e-212 742.3 644 57.6
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 3.2e-212 742.3 650 57.5
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 2.1e-211 739.6 654 58.3
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 2.1e-211 739.6 647 59.8
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 2.3e-210 736.1 660 58.9
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 3.9e-210 735.3 652 58.0
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 5.1e-210 734.9 648 59.3
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 6.7e-210 734.6 645 57.2
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 1.5e-209 733.4 652 59.2
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 5.6e-209 731.5 666 57.1
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 7.4e-209 731.1 652 57.8
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 2.8e-208 729.2 642 58.1
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 4.8e-208 728.4 654 56.4
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.8e-207 726.5 632 59.8
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 3.1e-207 725.7 652 57.7
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 5.8e-206 721.5 652 57.1
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 5.8e-206 721.5 656 59.0
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 2.2e-205 719.5 654 57.3
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 4.9e-205 718.4 649 57.5
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 6.4e-205 718.0 411 91.7
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 1.4e-204 716.8 654 57.0
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.4e-204 716.8 642 57.0
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 2.4e-204 716.1 644 57.1
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 3.2e-204 715.7 654 56.7
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 7.9e-203 711.1 652 58.3
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 1.8e-202 709.9 652 55.1
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.0e-202 709.1 654 57.3
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 3.9e-202 708.8 653 57.6
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 3.9e-202 708.8 653 57.3
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 6.7e-202 708.0 656 55.9
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 8.7e-202 707.6 659 55.5
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.5e-201 706.8 652 57.2
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 9.6e-201 704.1 656 55.6
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 6.2e-200 701.4 653 55.4
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 4.0e-199 698.7 652 56.6
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 5.3e-199 698.4 647 57.2
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 4.5e-198 695.3 644 56.7
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.0e-197 694.1 654 55.8
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 1.0e-197 694.1 652 57.5
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.4e-196 690.3 650 54.2
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.2e-195 687.2 654 55.2
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 3.5e-195 685.6 671 53.9
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 3.5e-195 685.6 647 56.3
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 3.3e-193 679.1 669 54.4
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 1.4e-191 673.7 654 53.7
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 5.9e-190 668.3 655 53.6
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 6.1e-187 658.3 655 52.5
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 7.9e-187 657.9 661 52.0
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.4e-186 657.1 649 52.1
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 7.4e-185 651.4 655 53.3
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 1.2e-182 644.0 640 55.2
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.4e-178 630.6 685 49.9
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 4.4e-177 625.5 638 53.3
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 1.5e-174 617.1 657 50.2
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 2.6e-174 616.3 659 50.2
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 1.9e-172 610.1 646 52.3
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 6.7e-170 601.7 658 49.8
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 8.2e-168 594.7 510 61.2
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 7.0e-151 538.5 485 56.5
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.3e-128 464.5 358 65.9
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 9.2e-127 458.4 519 47.6
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 1.8e-122 444.1 477 50.7
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 4.4e-121 439.5 363 62.3
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 4.1e-119 433.0 609 45.3
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 1.3e-117 427.9 664 39.0
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 6.6e-101 372.5 653 35.8
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.3e-99 368.2 640 34.4
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.7e-91 340.1 500 39.8
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 3.7e-83 313.5 341 49.0
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 2.0e-73 281.2 283 49.5
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 3.8e-72 276.9 756 28.8
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 2.7e-70 270.8 270 51.5
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 1.2e-62 245.4 707 28.0
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 4.2e-55 220.3 276 44.9
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 2.1e-54 218.0 355 36.3
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 1.8e-45 188.3 182 53.8
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.8e-37 161.8 208 44.7
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 6.8e-29 133.3 130 57.7
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 8.9e-29 132.9 81 72.8
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 2.7e-25 121.3 221 35.3
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 1.0e-24 119.4 207 33.8
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 5.0e-24 117.1 96 65.6
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.0e-21 109.4 62 88.7
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.5e-20 105.5 92 50.0
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 6.4e-19 100.1 257 31.5
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.0e-17 95.1 86 46.5
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 1.3e-16 92.4 204 33.8
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 8.6e-16 89.7 108 41.7
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.9e-15 88.6 100 47.0
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 8.1e-14 83.2 99 46.5
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 6.8e-13 80.1 77 53.2
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.0e-12 78.6 65 61.5
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 3.4e-12 77.8 77 51.9
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 7.3e-07 60.1 41 75.6
CDE05G1743 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 9.5e-07 59.7 56 53.6


User provided reference genes

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