Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p08990 Brassica napus HOM05D003546 ORTHO05D040745 2.2e-42 175.3 90 100.0
BolC8t47744H Brassica oleracea HOM05D003546 ORTHO05D040745 2.5e-38 161.8 88 93.2
BcaC03g14253 Brassica carinata HOM05D003546 ORTHO05D005667 1.5e-14 82.8 78 60.3
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 4.7e-13 77.8 49 79.6
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 4.7e-13 77.8 49 79.6
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 6.2e-13 77.4 49 77.6
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 6.2e-13 77.4 49 77.6
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 6.2e-13 77.4 49 77.6
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 1.1e-12 76.6 49 79.6
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 1.1e-12 76.6 49 77.6
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 1.1e-12 76.6 49 77.6
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 1.8e-12 75.9 49 77.6
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 5.3e-12 74.3 49 75.5
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 9.0e-12 73.6 49 73.5
BcaC01g00338 Brassica carinata HOM05D003546 ORTHO05D005667 9.0e-12 73.6 49 77.6
C02p16330 Brassica napus HOM05D003546 ORTHO05D005667 9.0e-12 73.6 47 78.7
C02p16530 Brassica napus HOM05D003546 ORTHO05D005667 9.0e-12 73.6 49 77.6
A01p26360 Brassica napus HOM05D003546 ORTHO05D014122 1.2e-11 73.2 49 77.6
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 2.0e-11 72.4 48 72.9
BolC2t07734H Brassica oleracea HOM05D003546 ORTHO05D005667 2.0e-11 72.4 46 80.4
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 2.0e-11 72.4 49 71.4
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 3.4e-11 71.6 49 73.5
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 3.4e-11 71.6 49 71.4
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 4.4e-11 71.2 49 69.4
BraA01t02562Z Brassica rapa HOM05D003546 ORTHO05D014122 5.8e-11 70.9 49 75.5
C03p78600 Brassica napus HOM05D003546 ORTHO05D005667 7.6e-11 70.5 46 78.3
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 7.6e-11 70.5 49 69.4
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 9.9e-11 70.1 49 71.4
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 9.9e-11 70.1 49 65.3
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 9.9e-11 70.1 49 65.3
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 9.9e-11 70.1 49 65.3
SHI19235 Sapria himalayana HOM05D003546 ORTHO05D005667 9.9e-11 70.1 49 67.3
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 2.2e-10 68.9 49 63.3
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 2.2e-10 68.9 49 67.3
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 2.9e-10 68.6 54 61.1
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 2.9e-10 68.6 49 69.4
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 3.8e-10 68.2 49 67.3
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 3.8e-10 68.2 50 66.0
BcaC02g08580 Brassica carinata HOM05D003546 ORTHO05D014122 4.9e-10 67.8 59 64.4
BcaC02g08582 Brassica carinata HOM05D003546 ORTHO05D014122 4.9e-10 67.8 59 64.4
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 4.9e-10 67.8 49 65.3
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 4.9e-10 67.8 49 63.3
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 4.9e-10 67.8 49 67.3
BcaC08g43888 Brassica carinata HOM05D003546 ORTHO05D031910 6.4e-10 67.4 49 71.4
C06p12730 Brassica napus HOM05D003546 ORTHO05D031910 6.4e-10 67.4 49 71.4
BolC6t36430H Brassica oleracea HOM05D003546 ORTHO05D031910 6.4e-10 67.4 49 71.4
BolC8t52242H Brassica oleracea HOM05D003546 ORTHO05D014122 6.4e-10 67.4 49 71.4
Dinv13351 Davidia involucrata HOM05D003546 ORTHO05D005667 6.4e-10 67.4 56 58.9
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 6.4e-10 67.4 49 67.3
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 6.4e-10 67.4 49 67.3
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 6.4e-10 67.4 49 67.3
C05p52660 Brassica napus HOM05D003546 ORTHO05D014122 8.4e-10 67.0 48 75.0
BolC4t26808H Brassica oleracea HOM05D003546 ORTHO05D014122 8.4e-10 67.0 48 75.0
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 8.4e-10 67.0 49 67.3
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 8.4e-10 67.0 49 63.3
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 8.4e-10 67.0 49 65.3
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 1.1e-09 66.6 49 63.3
C04p52320 Brassica napus HOM05D003546 ORTHO05D014122 1.1e-09 66.6 49 71.4
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 1.1e-09 66.6 49 65.3
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 1.1e-09 66.6 49 65.3
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 1.1e-09 66.6 49 65.3
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 1.4e-09 66.2 49 65.3
C02p18050 Brassica napus HOM05D003546 ORTHO05D005667 1.4e-09 66.2 52 69.2
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 1.4e-09 66.2 49 61.2
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 1.4e-09 66.2 49 63.3
Oeu058446.1 Olea europaea HOM05D003546 ORTHO05D005667 1.4e-09 66.2 49 63.3
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 1.4e-09 66.2 49 63.3
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 1.4e-09 66.2 49 63.3
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 1.4e-09 66.2 49 63.3
AUR62019676 Chenopodium quinoa HOM05D003546 ORTHO05D005667 1.9e-09 65.9 49 65.3
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 1.9e-09 65.9 49 61.2
Haze_08456 Corylus avellana HOM05D003546 ORTHO05D005667 1.9e-09 65.9 51 62.7
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 1.9e-09 65.9 49 61.2
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 1.9e-09 65.9 49 61.2
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 1.9e-09 65.9 49 63.3
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 2.4e-09 65.5 49 65.3
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 2.4e-09 65.5 49 63.3
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 2.4e-09 65.5 49 65.3
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 2.4e-09 65.5 49 65.3
BcaC03g14396 Brassica carinata HOM05D003546 ORTHO05D005667 3.2e-09 65.1 52 67.3
BolC2t07938H Brassica oleracea HOM05D003546 ORTHO05D005667 3.2e-09 65.1 52 67.3
A08p37500 Brassica napus HOM05D003546 ORTHO05D014122 4.2e-09 64.7 49 69.4
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 4.2e-09 64.7 49 63.3
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 4.2e-09 64.7 49 59.2
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 4.2e-09 64.7 49 59.2
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 4.2e-09 64.7 49 63.3
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 4.2e-09 64.7 49 63.3
SalBow8G3953 Salvia bowleyana HOM05D003546 ORTHO05D005667 4.2e-09 64.7 51 54.9
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 4.2e-09 64.7 49 63.3
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 5.4e-09 64.3 49 63.3
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 5.4e-09 64.3 48 62.5
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 7.1e-09 63.9 49 63.3
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 7.1e-09 63.9 49 63.3
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 7.1e-09 63.9 49 63.3
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 7.1e-09 63.9 49 65.3
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 7.1e-09 63.9 49 61.2
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 7.1e-09 63.9 49 61.2
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 7.1e-09 63.9 49 63.3
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 9.3e-09 63.5 49 61.2
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 9.3e-09 63.5 49 61.2
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 9.3e-09 63.5 49 61.2
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 1.2e-08 63.2 49 57.1
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.2e-08 63.2 49 57.1
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.2e-08 63.2 49 57.1
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 1.6e-08 62.8 49 61.2
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 1.6e-08 62.8 49 59.2
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 2.1e-08 62.4 49 59.2
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 2.1e-08 62.4 49 59.2
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 2.1e-08 62.4 48 58.3
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 2.7e-08 62.0 49 57.1
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 2.7e-08 62.0 50 64.0
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 2.7e-08 62.0 49 57.1
BcaB06g26617 Brassica carinata HOM05D003546 ORTHO05D091407 3.5e-08 61.6 69 50.7
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 3.5e-08 61.6 49 59.2
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 3.5e-08 61.6 49 57.1
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 3.5e-08 61.6 49 57.1
BcaC09g49138 Brassica carinata HOM05D003546 ORTHO05D014122 4.6e-08 61.2 49 65.3
Glyma.13G263300 Glycine max HOM05D003546 ORTHO05D005667 4.6e-08 61.2 49 53.1
RcHm_v2.0_Chr5g0028931 Rosa chinensis HOM05D003546 ORTHO05D005667 4.6e-08 61.2 53 52.8
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 6.0e-08 60.8 49 57.1
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 6.0e-08 60.8 49 57.1
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 6.0e-08 60.8 49 59.2
HPP92_024629 Vanilla planifolia HOM05D003546 ORTHO05D005667 6.0e-08 60.8 48 60.4
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 7.8e-08 60.5 49 57.1
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 7.8e-08 60.5 49 55.1
VMungo1080G1435 Vigna mungo HOM05D003546 ORTHO05D005667 7.8e-08 60.5 49 53.1
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 1.0e-07 60.1 49 53.1
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 1.0e-07 60.1 50 56.0
A09p60550 Brassica napus HOM05D003546 ORTHO05D005667 1.7e-07 59.3 37 73.0
BraA09t41425Z Brassica rapa HOM05D003546 ORTHO05D005667 1.7e-07 59.3 37 73.0
Phvul.005G070000 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 1.7e-07 59.3 49 53.1
BcaB01g02368 Brassica carinata HOM05D047160 ORTHO05D096100 2.3e-07 58.9 35 85.7
BcaB01g00957 Brassica carinata HOM05D003546 ORTHO05D014122 8.7e-07 57.0 36 80.6
Glyma.15G240800 Glycine max HOM05D003546 ORTHO05D005667 8.7e-07 57.0 49 51.0
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 8.7e-07 57.0 49 61.2
C01p42230 Brassica napus HOM05D003546 ORTHO05D014122 1.1e-06 56.6 52 59.6
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 1.5e-06 56.2 49 51.0
Glyma.13G263400 Glycine max HOM05D003546 ORTHO05D005667 9.6e-06 53.5 49 46.9


User provided reference genes

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