Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 1.9e-59 232.6 115 100.0
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 1.9e-59 232.6 115 100.0
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 1.9e-59 232.6 115 100.0
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 5.5e-59 231.1 115 99.1
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 5.5e-59 231.1 115 99.1
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 3.7e-55 218.4 113 93.8
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 1.8e-54 216.1 112 93.8
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 6.9e-54 214.2 113 91.2
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 6.9e-54 214.2 113 91.2
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 6.9e-54 214.2 113 91.2
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 6.9e-54 214.2 113 91.2
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 6.9e-54 214.2 113 91.2
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 3.4e-53 211.8 113 89.4
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 5.9e-53 211.1 113 90.3
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.0e-52 210.3 113 88.5
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 2.2e-52 209.1 113 87.6
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 5.0e-52 208.0 109 90.8
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 2.5e-51 205.7 108 90.7
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 5.1e-49 198.0 107 88.8
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 6.3e-47 191.0 107 84.1
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 1.8e-46 189.5 113 78.8
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 1.8e-46 189.5 113 78.8
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 2.4e-46 189.1 109 81.7
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 3.1e-46 188.7 115 77.4
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 5.3e-46 188.0 113 78.8
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 7.0e-46 187.6 115 77.4
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 9.1e-46 187.2 115 77.4
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 1.5e-45 186.4 113 78.8
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 2.0e-45 186.0 116 75.9
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 2.0e-45 186.0 116 77.6
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 4.5e-45 184.9 113 77.9
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 4.5e-45 184.9 108 78.7
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 5.9e-45 184.5 107 79.4
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 5.9e-45 184.5 108 78.7
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 5.9e-45 184.5 108 77.8
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 7.7e-45 184.1 115 73.9
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.7e-44 183.0 108 78.7
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.7e-44 183.0 108 78.7
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 1.7e-44 183.0 108 79.6
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 1.7e-44 183.0 108 79.6
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 1.7e-44 183.0 108 79.6
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 2.2e-44 182.6 108 77.8
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 2.2e-44 182.6 108 77.8
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 2.9e-44 182.2 108 77.8
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 2.9e-44 182.2 113 76.1
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 5.0e-44 181.4 108 77.8
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 5.0e-44 181.4 113 76.1
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 6.5e-44 181.0 107 77.6
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 8.5e-44 180.6 108 76.9
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 8.5e-44 180.6 108 77.8
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 1.1e-43 180.3 108 75.9
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.1e-43 180.3 115 73.0
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 1.4e-43 179.9 107 75.7
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 1.4e-43 179.9 111 73.0
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 1.9e-43 179.5 109 77.1
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 1.9e-43 179.5 108 75.9
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 2.5e-43 179.1 108 75.9
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 2.5e-43 179.1 116 73.3
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 2.5e-43 179.1 110 75.5
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 3.2e-43 178.7 115 73.0
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 4.2e-43 178.3 113 75.2
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 4.2e-43 178.3 108 75.0
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 7.2e-43 177.6 121 72.7
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 1.2e-42 176.8 115 73.0
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 1.6e-42 176.4 108 73.1
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 1.6e-42 176.4 108 76.9
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 1.6e-42 176.4 108 76.9
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 1.6e-42 176.4 108 75.0
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 2.1e-42 176.0 108 74.1
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 2.7e-42 175.6 110 73.6
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 2.7e-42 175.6 108 74.1
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 3.6e-42 175.3 110 75.5
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 3.6e-42 175.3 115 72.2
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 3.6e-42 175.3 108 75.9
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 6.1e-42 174.5 110 74.5
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 6.1e-42 174.5 115 71.3
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 8.0e-42 174.1 108 73.1
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 8.0e-42 174.1 108 75.9
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 1.0e-41 173.7 108 74.1
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 1.0e-41 173.7 108 75.0
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 1.4e-41 173.3 108 74.1
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 1.4e-41 173.3 109 73.4
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 1.4e-41 173.3 115 70.4
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 1.8e-41 172.9 108 75.0
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 1.8e-41 172.9 108 75.0
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 1.8e-41 172.9 113 71.7
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 1.8e-41 172.9 113 71.7
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 2.3e-41 172.6 110 72.7
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 3.9e-41 171.8 108 72.2
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 3.9e-41 171.8 112 72.3
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 6.7e-41 171.0 115 73.0
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 1.1e-40 170.2 115 69.6
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 1.1e-40 170.2 108 74.1
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 1.5e-40 169.9 112 71.4
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 1.5e-40 169.9 115 69.6
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 1.5e-40 169.9 108 73.1
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 1.5e-40 169.9 108 73.1
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 2.0e-40 169.5 108 72.2
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 2.0e-40 169.5 113 69.9
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 3.3e-40 168.7 108 70.4
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 3.3e-40 168.7 108 73.1
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 3.3e-40 168.7 108 73.1
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 3.3e-40 168.7 108 73.1
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 4.4e-40 168.3 113 71.7
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 5.7e-40 167.9 110 70.0
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 7.4e-40 167.5 108 72.2
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 1.3e-39 166.8 107 70.1
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 1.3e-39 166.8 107 70.1
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 1.7e-39 166.4 108 70.4
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 2.2e-39 166.0 108 72.2
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 2.2e-39 166.0 108 72.2
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 2.8e-39 165.6 108 71.3
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 2.4e-38 162.5 113 69.9
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 3.1e-38 162.2 83 91.6
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 9.1e-38 160.6 110 70.9
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 2.6e-37 159.1 113 69.0
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 4.5e-37 158.3 114 68.4
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 7.7e-37 157.5 113 68.1
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 6.1e-34 147.9 109 69.7
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 1.4e-33 146.7 96 74.0
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 3.0e-33 145.6 95 68.4
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 4.4e-32 141.7 90 73.3
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 6.3e-31 137.9 92 68.5
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 9.1e-30 134.0 104 70.2
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 2.2e-28 129.4 108 58.3
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 3.0e-25 119.0 101 62.4
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 2.6e-24 115.9 108 58.3
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 7.5e-24 114.4 105 55.2
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 1.3e-23 113.6 58 89.7
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 7.0e-22 107.8 94 58.5
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 2.3e-20 102.8 61 72.1
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 2.3e-20 102.8 100 53.0
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 3.8e-20 102.1 108 50.0
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 6.6e-20 101.3 64 79.7
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 1.5e-19 100.1 107 48.6
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 3.6e-18 95.5 53 73.6
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 3.6e-18 95.5 70 62.9
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 1.4e-17 93.6 73 61.6
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 8.9e-17 90.9 57 77.2
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 1.2e-16 90.5 57 77.2
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 3.1e-14 82.4 55 76.4
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 7.8e-13 77.8 111 41.4
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 1.1e-11 73.9 54 72.2
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 2.5e-11 72.8 76 52.6
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 2.1e-10 69.7 101 38.6
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 3.6e-10 68.9 82 47.6
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 5.2e-09 65.1 53 52.8
A08p09670 Brassica napus HOM05D005190 ORTHO05D006183 1.1e-06 57.4 55 56.4


User provided reference genes

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