Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 3815.4 1967 100.0
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 3810.0 1970 99.8
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 3735.3 1967 97.7
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 3729.5 1970 97.6
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 3251.1 1967 87.0
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 3245.7 1973 85.5
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 3215.6 1970 84.6
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 3210.6 1974 84.4
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 3206.8 1974 83.7
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 3170.6 1970 82.9
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 2837.4 2014 74.1
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 2716.4 1978 70.8
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2068.1 1975 55.7
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2038.1 1979 55.7
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2036.2 1979 55.0
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2035.8 1981 54.6
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2034.6 1980 55.1
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2028.1 1983 54.4
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2023.8 1984 54.4
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2018.4 2062 54.3
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2011.5 1981 54.4
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2006.1 1978 54.1
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1996.9 1979 54.3
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1983.8 1978 54.4
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 1968.0 1982 54.0
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1957.6 1974 53.4
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1934.8 2083 51.2
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1932.1 1978 53.0
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1922.5 1979 52.8
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 1920.2 1998 52.5
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1919.8 1980 52.9
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1915.2 1981 51.9
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1913.7 1980 52.9
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 1907.1 1992 52.3
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1861.7 1972 50.4
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1856.3 2189 48.3
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1852.0 1976 50.1
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1845.5 1986 50.4
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1842.0 1979 50.9
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1832.8 1979 49.9
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1831.6 1978 49.9
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1830.5 2002 50.1
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1825.1 1792 54.4
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1811.6 2000 50.0
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1801.2 1986 50.1
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1787.7 2053 48.0
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1768.8 1978 48.8
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1767.7 1975 48.7
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1764.6 1976 49.1
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1763.4 1985 49.0
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1752.6 2069 47.2
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1744.2 1975 48.4
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1735.7 1994 48.6
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1723.8 1994 48.4
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1718.4 2044 46.8
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1717.2 1974 47.6
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1692.9 1982 46.9
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1682.5 1975 47.4
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1676.0 1986 46.4
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1671.0 1983 47.1
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1666.0 1972 46.9
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1660.6 1970 47.8
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1648.6 2010 46.6
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1647.9 2093 44.9
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1631.7 1976 46.0
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1623.6 2021 45.6
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1615.1 2172 43.1
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1595.5 1949 45.4
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1590.9 2014 44.6
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1567.4 1974 45.7
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1563.1 1731 49.5
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1553.9 1981 44.6
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1535.8 1831 46.3
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1476.1 1990 43.5
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1470.3 2001 42.5
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1399.0 1500 51.6
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1337.4 1954 41.5
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1307.7 1397 51.8
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 0.0e+00 1229.9 736 85.5
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1162.5 1382 49.4
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1141.7 2325 35.2
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1119.0 1254 50.8
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1103.6 1398 45.2
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 1.9e-300 1036.9 1999 34.3
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 4.5e-281 972.6 2072 31.0
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 7.9e-262 908.7 2076 30.8
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.9e-260 904.0 1232 42.0
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 5.0e-248 862.8 2091 30.0
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 1.6e-238 831.2 1217 40.8
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.1e-234 818.5 783 54.4
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 2.7e-230 803.9 1086 42.4
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 2.7e-222 777.3 1020 44.8
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 2.7e-217 760.8 717 57.0
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.0e-205 722.2 589 59.9
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 8.9e-205 719.2 666 56.9
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 8.1e-190 669.5 742 48.9
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.7e-184 651.7 1476 30.5
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 3.9e-184 650.6 1340 34.3
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 5.1e-176 623.6 860 41.5
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 4.9e-171 607.1 475 64.8
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 3.0e-160 571.2 716 43.4
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 1.3e-158 565.8 738 44.2
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 3.3e-143 514.6 2200 24.0
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 5.9e-140 503.8 526 52.3
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 2.4e-133 481.9 797 40.7
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 9.7e-119 433.3 767 35.6
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 2.2e-115 422.2 398 55.5
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 8.0e-113 413.7 497 45.5
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 4.4e-111 407.9 334 59.0
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 4.4e-111 407.9 386 56.0
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 1.5e-103 382.9 605 39.2
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 4.1e-101 374.8 745 34.1
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.9e-90 339.3 650 35.7
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.9e-82 312.8 637 34.9
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.9e-74 286.2 228 61.4
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 7.3e-66 257.7 201 62.7
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 5.6e-58 231.5 477 30.0
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 3.0e-51 209.1 165 61.8
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 4.5e-47 195.3 208 51.0
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 8.7e-43 181.0 132 66.7
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 3.4e-39 169.1 352 36.1
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.7e-38 166.8 581 26.5
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 3.0e-35 156.0 145 49.7
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.4e-32 147.1 100 68.0
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 1.0e-30 141.0 133 53.4
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 3.8e-30 139.0 391 29.7
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 5.1e-27 128.6 111 64.0
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 5.7e-26 125.2 122 48.4
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 2.8e-25 122.9 521 23.4
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 5.3e-24 118.6 92 58.7
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 4.5e-23 115.5 99 56.6
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.9e-22 112.8 149 46.3
CARHR053140 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.1e-21 110.9 73 83.6
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 3.2e-21 109.4 93 57.0
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 7.9e-20 104.8 62 80.6
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 1.8e-19 103.6 123 39.8
CARHR053160 Cardamine hirsuta HOM05D004110 ORTHO05D004810 2.3e-19 103.2 72 72.2
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 3.9e-19 102.4 89 55.1
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 5.1e-19 102.1 697 20.7
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 8.8e-19 101.3 102 49.0
BcaC07g36804 Brassica carinata HOM05D004110 ORTHO05D021644 1.1e-18 100.9 77 75.3
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 4.4e-18 99.0 122 40.2
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 7.4e-18 98.2 186 34.4
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 2.8e-17 96.3 152 37.5
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 3.7e-17 95.9 224 29.9
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 6.9e-16 91.7 152 33.6
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 6.9e-16 91.7 109 45.0
C04p11270 Brassica napus HOM05D004110 ORTHO05D021644 5.9e-15 88.6 48 95.8
BolC4t22766H Brassica oleracea HOM05D004110 ORTHO05D021644 5.9e-15 88.6 48 95.8
C08p02530 Brassica napus HOM05D004110 ORTHO05D021644 2.2e-14 86.7 49 91.8
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 6.5e-14 85.1 89 49.4
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 2.1e-12 80.1 56 62.5
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 4.7e-12 79.0 69 55.1
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 7.9e-12 78.2 71 54.9
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 3.3e-10 72.8 51 56.9
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 5.7e-10 72.0 60 53.3
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 7.4e-10 71.6 59 61.0
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 7.4e-10 71.6 161 30.4
AT4G10843 Arabidopsis thaliana HOM05D004110 ORTHO05D038727 6.3e-09 68.6 95 46.3
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 8.2e-09 68.2 173 31.8
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 7.0e-08 65.1 154 31.2
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 7.0e-08 65.1 82 41.5
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 1.6e-07 63.9 110 37.3
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 4.5e-07 62.4 56 55.4
A08p24030 Brassica napus HOM05D004110 ORTHO05D004810 1.3e-06 60.8 35 82.9
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 5.0e-06 58.9 91 40.7
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 8.5e-06 58.2 91 40.7
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 8.5e-06 58.2 53 49.1


User provided reference genes

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