Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 8.3e-101 370.5 212 100.0
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 8.1e-88 327.4 212 90.6
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 2.6e-86 322.4 205 92.2
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 1.7e-85 319.7 213 87.8
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.2e-85 319.3 212 86.8
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 1.2e-83 313.5 214 88.3
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 4.6e-83 311.6 213 88.3
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 7.9e-83 310.8 212 86.8
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 7.3e-81 304.3 212 84.0
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 2.1e-80 302.8 214 86.9
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 2.0e-78 296.2 212 79.7
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 1.3e-77 293.5 209 86.1
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.3e-77 293.5 213 82.2
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 4.2e-76 288.5 213 81.2
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 9.6e-73 277.3 212 79.2
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 4.2e-68 261.9 155 98.1
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 9.0e-63 244.2 155 93.5
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.5e-60 236.1 215 64.7
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 7.7e-54 214.5 201 70.1
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 5.0e-53 211.8 162 85.2
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 7.4e-49 198.0 195 65.6
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 9.1e-47 191.0 193 63.2
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.2e-46 190.7 213 59.2
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.0e-45 187.6 216 58.3
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 3.8e-45 185.7 164 68.9
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 6.5e-45 184.9 219 56.6
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.1e-44 184.1 216 57.9
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 1.4e-44 183.7 219 58.0
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 4.2e-44 182.2 212 57.5
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.2e-44 182.2 219 57.5
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.2e-43 180.6 218 56.9
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 2.1e-43 179.9 200 55.0
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 6.1e-43 178.3 210 54.8
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.0e-42 177.6 206 58.3
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.0e-42 177.6 164 62.8
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 1.8e-42 176.8 166 63.3
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 3.9e-42 175.6 146 60.3
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 5.1e-42 175.3 206 57.8
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 8.8e-42 174.5 216 56.5
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.5e-41 173.7 206 57.3
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 3.3e-41 172.6 212 56.1
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 9.7e-41 171.0 164 65.2
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 2.2e-40 169.9 164 64.0
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 8.2e-40 167.9 162 63.0
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 8.2e-40 167.9 216 56.5
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 1.1e-39 167.5 162 58.6
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 1.1e-39 167.5 217 54.4
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 1.1e-39 167.5 207 57.5
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 4.1e-39 165.6 162 53.7
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.2e-38 164.1 211 51.7
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 1.2e-38 164.1 196 52.6
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.6e-38 163.7 214 57.5
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 2.6e-38 162.9 149 65.8
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 4.5e-38 162.2 209 54.1
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 5.9e-38 161.8 210 53.3
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 7.7e-38 161.4 110 70.9
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.0e-37 161.0 213 49.3
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 2.9e-37 159.5 213 55.9
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 3.8e-37 159.1 166 61.4
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 5.0e-37 158.7 226 49.6
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 6.5e-37 158.3 207 54.1
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 2.5e-36 156.4 210 53.3
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.5e-36 156.4 211 52.6
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 3.2e-36 156.0 213 51.6
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 7.2e-36 154.8 112 72.3
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 7.2e-36 154.8 219 53.0
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 3.6e-35 152.5 186 55.4
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 6.1e-35 151.8 222 51.8
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 2.3e-34 149.8 108 67.6
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 1.5e-33 147.1 110 64.5
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 1.5e-33 147.1 212 51.9
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 3.3e-33 146.0 148 54.7
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 3.3e-33 146.0 110 67.3
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 4.4e-33 145.6 164 56.1
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.3e-32 144.1 165 57.0
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 2.8e-32 142.9 168 53.6
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 2.4e-31 139.8 100 89.0
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 2.4e-31 139.8 110 62.7
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 2.4e-31 139.8 110 62.7
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 3.1e-31 139.4 102 65.7
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 1.2e-30 137.5 99 88.9
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.6e-30 137.1 187 53.5
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 3.8e-29 132.5 202 50.0
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 1.1e-28 131.0 110 58.2
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 1.9e-28 130.2 234 43.2
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 5.5e-28 128.6 99 65.7
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 4.7e-27 125.6 235 42.6
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.2e-25 120.9 204 43.6
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 8.3e-24 114.8 94 55.3
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 5.4e-23 112.1 74 68.9
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 9.1e-23 111.3 87 62.1
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 5.0e-21 105.5 60 93.3
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 8.5e-21 104.8 180 52.2
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 4.2e-20 102.4 113 51.3
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 5.5e-20 102.1 87 63.2
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 9.4e-20 101.3 87 63.2
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.2e-19 100.9 90 61.1
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.2e-19 100.9 110 50.9
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 1.6e-19 100.5 90 56.7
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.6e-19 100.5 87 64.4
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.1e-19 100.1 90 56.7
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 2.1e-19 100.1 240 37.1
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 3.6e-19 99.4 161 55.9
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 3.6e-19 99.4 179 42.5
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 3.6e-19 99.4 89 59.6
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 3.6e-19 99.4 89 59.6
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 4.7e-19 99.0 91 60.4
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 4.7e-19 99.0 90 57.8
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 4.7e-19 99.0 185 47.6
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 4.7e-19 99.0 90 57.8
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 6.1e-19 98.6 89 56.2
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 6.1e-19 98.6 186 45.7
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.0e-18 97.8 90 54.4
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 1.4e-18 97.4 87 56.3
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 1.4e-18 97.4 89 55.1
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.8e-18 97.1 87 59.8
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 3.0e-18 96.3 90 53.3
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 5.2e-18 95.5 184 37.5
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 5.2e-18 95.5 110 49.1
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 5.2e-18 95.5 103 50.5
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 6.8e-18 95.1 111 53.2
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 6.8e-18 95.1 89 58.4
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 8.8e-18 94.7 89 53.9
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.2e-17 94.4 132 45.5
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 1.5e-17 94.0 110 49.1
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 2.0e-17 93.6 187 40.1
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 2.6e-17 93.2 90 54.4
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 3.4e-17 92.8 89 53.9
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 4.4e-17 92.4 89 57.3
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 4.4e-17 92.4 89 57.3
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 4.4e-17 92.4 90 54.4
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 4.4e-17 92.4 90 54.4
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 5.7e-17 92.0 89 52.8
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 9.8e-17 91.3 87 55.2
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.3e-16 90.9 89 52.8
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.7e-16 90.5 90 52.2
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 1.7e-16 90.5 90 53.3
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 2.2e-16 90.1 154 46.1
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 2.2e-16 90.1 90 50.0
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 2.8e-16 89.7 84 59.5
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 4.9e-16 89.0 90 51.1
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 6.3e-16 88.6 193 37.8
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 6.3e-16 88.6 188 42.0
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 6.3e-16 88.6 193 37.8
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 6.3e-16 88.6 58 75.9
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 1.8e-15 87.0 187 42.2
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 9.2e-15 84.7 90 47.8
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 7.7e-14 81.6 79 54.4
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 1.0e-13 81.3 87 51.7
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 5.0e-13 79.0 91 47.3
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 1.1e-12 77.8 90 62.2
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 9.5e-12 74.7 87 47.1
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 9.5e-12 74.7 199 32.7
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 2.1e-11 73.6 85 40.0
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 1.4e-10 70.9 90 41.1
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 2.3e-10 70.1 59 62.7
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 2.9e-08 63.2 64 62.5
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 3.7e-08 62.8 55 60.0
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 1.4e-07 60.8 66 51.5
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 1.4e-07 60.8 89 56.2
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 1.8e-07 60.5 89 56.2
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.8e-07 60.5 51 62.7
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 4.1e-07 59.3 87 41.4
A07p42060 Brassica napus HOM05D000237 ORTHO05D017465 1.6e-06 57.4 72 55.6
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 1.6e-06 57.4 60 50.0
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 5.9e-06 55.5 143 46.2
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 7.8e-06 55.1 48 56.2


User provided reference genes

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