Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 2.3e-249 865.1 456 100.0
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 1.2e-240 836.3 458 96.7
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.1e-238 829.7 464 95.3
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 1.4e-238 829.3 456 94.7
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 1.8e-233 812.4 458 94.1
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 8.3e-231 803.5 463 93.5
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 2.4e-230 802.0 456 94.1
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 1.0e-225 786.6 469 90.6
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 2.6e-224 781.9 458 91.5
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 1.0e-220 770.0 462 89.4
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 1.3e-220 769.6 456 90.8
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 1.3e-220 769.6 456 90.8
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 2.3e-220 768.8 473 88.4
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.6e-218 762.7 464 87.3
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 1.8e-217 759.2 465 89.5
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.7e-215 752.7 478 87.0
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 7.1e-214 747.3 456 87.7
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 1.9e-211 739.2 458 88.0
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 1.2e-210 736.5 458 86.7
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 1.2e-210 736.5 465 85.8
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 2.0e-200 702.6 465 83.0
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 4.9e-199 698.0 462 82.5
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 2.7e-189 665.6 470 76.6
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 2.4e-182 642.5 410 85.4
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 2.1e-178 629.4 473 71.2
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 8.2e-178 627.5 480 69.6
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 2.4e-177 625.9 475 69.9
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 2.4e-177 625.9 480 71.5
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.1e-177 625.5 480 69.4
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 6.9e-177 624.4 473 70.2
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 2.0e-176 622.9 465 72.7
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 2.6e-176 622.5 474 70.9
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.5e-176 621.7 468 71.6
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 4.5e-176 621.7 473 71.7
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 5.8e-176 621.3 449 76.6
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 1.7e-175 619.8 476 68.5
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 4.9e-175 618.2 459 71.0
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 4.9e-175 618.2 475 68.2
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 6.5e-175 617.8 467 71.7
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 2.5e-174 615.9 492 68.3
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 7.1e-174 614.4 472 69.3
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.2e-173 613.6 459 70.4
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.2e-173 613.6 467 71.5
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.5e-173 612.1 473 70.0
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 3.5e-173 612.1 464 70.3
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 3.5e-173 612.1 464 70.0
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 6.0e-173 611.3 467 71.3
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.0e-172 610.5 476 68.7
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 1.8e-172 609.8 470 70.2
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 3.0e-172 609.0 472 68.6
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.1e-171 607.1 468 68.6
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.1e-171 607.1 479 68.9
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 1.5e-171 606.7 473 68.9
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.9e-171 606.3 461 73.5
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 3.3e-171 605.5 463 70.8
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 5.7e-171 604.7 468 70.1
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 5.7e-171 604.7 468 70.1
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 5.7e-171 604.7 485 68.0
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 7.4e-171 604.4 493 65.7
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.2e-170 600.9 469 68.2
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 1.4e-169 600.1 463 70.2
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 1.8e-169 599.7 472 68.6
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.8e-169 599.7 466 68.5
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 4.1e-169 598.6 473 67.4
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 5.3e-169 598.2 473 67.7
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.2e-168 597.0 472 67.8
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 2.0e-168 596.3 462 69.5
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.0e-167 594.0 474 68.6
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.3e-167 593.6 461 69.0
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 3.8e-167 592.0 469 67.2
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 3.8e-167 592.0 501 64.1
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 3.8e-167 592.0 465 68.6
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 3.8e-167 592.0 459 68.4
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 5.0e-167 591.7 472 67.8
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 5.0e-167 591.7 504 64.1
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.9e-166 589.7 461 67.2
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 4.2e-166 588.6 460 67.0
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 5.5e-166 588.2 459 67.5
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.5e-166 588.2 459 67.5
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 7.2e-166 587.8 469 69.1
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.3e-164 583.6 479 67.2
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 1.3e-164 583.6 469 68.4
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.8e-164 583.2 477 68.6
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 1.8e-164 583.2 467 67.5
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 6.7e-164 581.3 393 75.3
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 6.7e-164 581.3 468 68.8
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 6.7e-164 581.3 504 63.3
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-163 580.5 449 67.9
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 1.5e-163 580.1 524 61.6
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 3.3e-163 578.9 398 75.6
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 5.7e-163 578.2 470 68.7
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 1.6e-162 576.6 459 68.4
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.8e-162 575.9 489 65.2
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 2.4e-161 572.8 450 69.1
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 3.1e-161 572.4 479 66.2
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.2e-160 570.5 513 62.6
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.0e-159 567.4 455 66.8
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.2e-159 566.2 472 66.1
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 5.0e-159 565.1 345 80.9
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.9e-158 563.1 379 74.1
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 3.2e-158 562.4 516 62.0
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.5e-158 561.6 469 65.7
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 9.4e-158 560.8 490 63.3
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 1.6e-157 560.1 498 62.4
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.6e-157 560.1 531 58.6
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 1.6e-157 560.1 460 65.9
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 4.6e-157 558.5 447 66.7
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 1.1e-155 553.9 330 81.8
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 2.8e-154 549.3 405 71.6
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 1.8e-153 546.6 464 65.5
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.5e-152 543.5 465 64.5
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 1.5e-152 543.5 476 63.7
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 1.0e-151 540.8 459 67.3
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 2.5e-150 536.2 481 62.2
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 4.7e-149 531.9 463 63.5
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 4.7e-149 531.9 431 66.4
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 6.7e-148 528.1 463 63.1
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 2.0e-147 526.6 446 62.3
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.0e-143 514.2 432 66.2
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 1.5e-142 510.4 274 88.7
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 7.2e-142 508.1 456 59.6
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 3.6e-141 505.8 458 62.4
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 3.6e-141 505.8 279 85.7
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 1.4e-140 503.8 505 59.2
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 2.2e-138 496.5 404 66.8
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 1.1e-137 494.2 467 61.9
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.7e-136 489.6 333 71.2
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 1.0e-135 487.6 457 57.5
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 8.8e-132 474.6 328 68.9
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 4.4e-131 472.2 492 55.9
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.4e-129 466.5 481 54.5
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.0e-127 458.8 395 62.0
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 3.4e-123 446.0 334 68.3
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 6.3e-122 441.8 270 74.8
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 8.3e-122 441.4 431 59.6
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 7.0e-121 438.3 577 50.3
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.9e-118 430.3 347 64.0
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.1e-117 426.8 436 57.6
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 3.9e-111 406.0 465 54.2
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.2e-109 398.7 429 55.7
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.2e-101 374.4 335 56.1
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 8.1e-101 371.7 327 55.4
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.2e-97 358.2 287 64.5
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 7.8e-96 355.1 388 51.8
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 4.8e-77 292.7 258 57.8
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 5.8e-75 285.8 467 43.5
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.8e-58 229.9 467 39.0
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.2e-53 214.2 383 36.3
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.8e-39 167.9 236 48.3
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 5.7e-38 162.9 120 69.2
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.6e-35 154.1 404 32.9
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 5.7e-30 136.3 81 80.2
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 2.9e-26 124.0 162 45.7
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-19 102.1 176 42.0
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 1.2e-19 102.1 102 53.9
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 5.0e-18 96.7 136 43.4
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 4.5e-11 73.6 199 35.7
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 4.5e-11 73.6 187 37.4


User provided reference genes

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