Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p44500 Brassica napus HOM05D003894 ORTHO05D032733 2.4e-84 315.5 157 100.0
BolC7t44969H Brassica oleracea HOM05D003894 ORTHO05D032733 4.3e-78 294.7 186 83.9
BcaNung02627 Brassica carinata HOM05D003894 ORTHO05D032733 7.9e-56 220.7 142 81.0
C07p31050 Brassica napus HOM05D003894 ORTHO05D004584 3.6e-16 89.0 51 88.2
BolC7t43649H Brassica oleracea HOM05D003894 ORTHO05D004584 3.6e-16 89.0 51 88.2
Sp2g12140 Schrenkiella parvula HOM05D003894 ORTHO05D004584 6.8e-15 84.7 50 84.0
Thhalv10000960m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 2.0e-14 83.2 50 80.0
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 2.6e-14 82.8 50 82.0
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 2.6e-14 82.8 50 82.0
BcaC06g31388 Brassica carinata HOM05D003894 ORTHO05D004584 6.3e-13 78.2 52 80.8
CARHR173940 Cardamine hirsuta HOM05D003894 ORTHO05D004584 6.3e-13 78.2 50 80.0
AT5G47435 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 8.3e-13 77.8 50 76.0
Carub.0008s0035 Capsella rubella HOM05D003894 ORTHO05D004584 8.3e-13 77.8 50 76.0
AL8G10600 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 7.0e-12 74.7 50 76.0
COL.COLO4_37151 Corchorus olitorius HOM05D003894 ORTHO05D004584 4.3e-09 65.5 36 86.1
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 4.3e-09 65.5 36 86.1
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 4.3e-09 65.5 36 86.1
Thecc.03G249300 Theobroma cacao HOM05D003894 ORTHO05D004584 4.3e-09 65.5 36 86.1
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 7.3e-09 64.7 36 83.3
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 1.6e-08 63.5 36 80.6
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 2.1e-08 63.2 36 83.3
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 2.1e-08 63.2 36 83.3
Aqoxy7G00816 Aquilegia oxysepala HOM05D003894 ORTHO05D004584 2.8e-08 62.8 36 80.6
CANSAT21G2005 Cannabis sativa HOM05D003894 ORTHO05D004584 2.8e-08 62.8 36 83.3
MD06G1056700 Malus domestica HOM05D003894 ORTHO05D004584 2.8e-08 62.8 41 68.3
Manes.01G081900 Manihot esculenta HOM05D003894 ORTHO05D004584 2.8e-08 62.8 36 83.3
ATR0317G052 Amborella trichopoda HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
CSS0010253 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
CSS0035779 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
CiPaw.12G051400 Carya illinoinensis HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
Haze_07898 Corylus avellana HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
Eucgr.D02094 Eucalyptus grandis HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
HanXRQChr08g0227781 Helianthus annuus HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
Nn6g33915 Nelumbo nucifera HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
Nitab4.5_0001381g0150 Nicotiana tabacum HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
Nitab4.5_0002289g0080 Nicotiana tabacum HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
Potri.001G156600 Populus trichocarpa HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
QL12p011698 Quercus lobata HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
Sabra01G0134600 Salix brachista HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 3.6e-08 62.4 36 83.3
Cc08_g12260 Coffea canephora HOM05D003894 ORTHO05D004584 4.7e-08 62.0 36 83.3
MELO3C013927.2 Cucumis melo HOM05D003894 ORTHO05D004584 4.7e-08 62.0 36 83.3
CsaV3_3G002580 Cucumis sativus L. HOM05D003894 ORTHO05D004584 4.7e-08 62.0 36 83.3
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 4.7e-08 62.0 41 70.7
Lalb_Chr16g0386751 Lupinus albus HOM05D003894 ORTHO05D004584 4.7e-08 62.0 36 83.3
SGA_v2.0_scaffold104G30167 Striga asiatica HOM05D003894 ORTHO05D004584 4.7e-08 62.0 36 83.3
Actinidia14416 Actinidia chinensis HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 83.3
arahy.Tifrunner.gnm1.ann1.31006K Arachis hypogaea HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 83.3
arahy.Tifrunner.gnm1.ann1.HNG0SX Arachis hypogaea HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 83.3
MSTRG.12111 Avicennia marina HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 83.3
Cpa.g.sc29.176 Carica papaya HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 83.3
Dinv39159 Davidia involucrata HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 83.3
Duzib084G0486 Durio zibethinus HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 83.3
Duzib205G0957 Durio zibethinus HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 83.3
FAN18G1468 Fragaria x ananassa HOM05D003894 ORTHO05D004584 6.1e-08 61.6 38 73.7
Gorai.004G197200 Gossypium raimondii HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 83.3
Prupe.5G067100 Prunus persica HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 80.6
Rhsim11G0023700 Rhododendron simsii HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 83.3
SalBow6G6274 Salvia bowleyana HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 83.3
SGA_v2.0_scaffold199G41177 Striga asiatica HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 83.3
vmacro00193 Vaccinium macrocarpon HOM05D003894 ORTHO05D004584 6.1e-08 61.6 36 83.3
CiPaw.11G080600 Carya illinoinensis HOM05D003894 ORTHO05D004584 8.0e-08 61.2 36 80.6
Peaxi162Scf00209g00012 Petunia axillaris HOM05D003894 ORTHO05D004584 8.0e-08 61.2 36 80.6
Phvul.003G221600 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 8.0e-08 61.2 36 80.6
TPR.G18144 Trifolium pratense HOM05D003894 ORTHO05D004584 8.0e-08 61.2 36 77.8
TWI81G0562 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 8.0e-08 61.2 36 80.6
VMungo0251G1668 Vigna mungo HOM05D003894 ORTHO05D004584 8.0e-08 61.2 36 80.6
Aa31LG6G100 Aethionema arabicum HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
BcaC09g50466 Brassica carinata HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
BcaNung00098 Brassica carinata HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
A01p20010 Brassica napus HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
C01p25110 Brassica napus HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
BolC1t02463H Brassica oleracea HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
BraA01t01924Z Brassica rapa HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
CDE02G2221 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
CDE04G2654 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
Thhalv10025694m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
Glyma.05G060500 Glycine max HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
Lj4g0028027 Lotus japonicus HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
TPR.G23384 Trifolium pratense HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
TWI60G0612 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 1.0e-07 60.8 36 80.6
CARHR223970 Cardamine hirsuta HOM05D003894 ORTHO05D004584 1.4e-07 60.5 36 80.6
Migut.A01116 Erythranthe guttata HOM05D003894 ORTHO05D004584 1.4e-07 60.5 36 80.6
FvH4_5g19130 Fragaria vesca HOM05D003894 ORTHO05D004584 1.4e-07 60.5 36 77.8
FAN08G0890 Fragaria x ananassa HOM05D003894 ORTHO05D004584 1.4e-07 60.5 36 77.8
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 1.4e-07 60.5 36 77.8
Sed0006464 Sechium edule HOM05D003894 ORTHO05D004584 1.4e-07 60.5 36 80.6
Hund14570 Selenicereus undatus HOM05D003894 ORTHO05D004584 1.4e-07 60.5 36 80.6
Atru.chr9.1291 Acer truncatum HOM05D003894 ORTHO05D004584 1.8e-07 60.1 34 82.4
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 1.8e-07 60.1 36 80.6
AL7G37350 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 1.8e-07 60.1 36 80.6
AT4G17360 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 1.8e-07 60.1 36 80.6
arahy.Tifrunner.gnm1.ann1.0BBG36 Arachis hypogaea HOM05D003894 ORTHO05D004584 1.8e-07 60.1 36 80.6
arahy.Tifrunner.gnm1.ann1.HK0HI4 Arachis hypogaea HOM05D003894 ORTHO05D004584 1.8e-07 60.1 36 80.6
Carub.0007s2405 Capsella rubella HOM05D003894 ORTHO05D004584 1.8e-07 60.1 36 80.6
Lalb_Chr05g0214381 Lupinus albus HOM05D003894 ORTHO05D004584 1.8e-07 60.1 36 80.6
Ca_06903_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 2.3e-07 59.7 36 80.6
Ca_24586_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 2.3e-07 59.7 36 80.6
ECA233G0588 Erigeron canadensis HOM05D003894 ORTHO05D004584 2.3e-07 59.7 36 80.6
Glyma.17G142800 Glycine max HOM05D003894 ORTHO05D004584 2.3e-07 59.7 36 77.8
Lj8A264T58 Lonicera japonica HOM05D003894 ORTHO05D004584 2.3e-07 59.7 38 76.3
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 2.3e-07 59.7 36 75.0
Psat3g203360 Pisum sativum HOM05D003894 ORTHO05D004584 2.3e-07 59.7 36 77.8
Sp7g16820 Schrenkiella parvula HOM05D003894 ORTHO05D004584 2.3e-07 59.7 54 55.6
GSVIVG01004722001 Vitis vinifera HOM05D003894 ORTHO05D004584 2.3e-07 59.7 36 80.6
CSS0041030 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 3.0e-07 59.3 36 80.6
CAN.G1058.48 Capsicum annuum HOM05D003894 ORTHO05D004584 3.0e-07 59.3 36 77.8
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 3.0e-07 59.3 36 77.8
Solyc08g078490.4 Solanum lycopersicum HOM05D003894 ORTHO05D004584 3.0e-07 59.3 36 77.8
Sopen08g026970 Solanum pennellii HOM05D003894 ORTHO05D004584 3.0e-07 59.3 36 77.8
PGSC0003DMG401004821 Solanum tuberosum HOM05D003894 ORTHO05D004584 3.0e-07 59.3 36 77.8
AUR62007102 Chenopodium quinoa HOM05D003894 ORTHO05D004584 4.0e-07 58.9 36 75.0
AUR62019965 Chenopodium quinoa HOM05D003894 ORTHO05D004584 4.0e-07 58.9 36 75.0
Oeu064622.1 Olea europaea HOM05D003894 ORTHO05D004584 4.0e-07 58.9 36 77.8
ClCG10G002550 Citrullus lanatus HOM05D003894 ORTHO05D004584 5.2e-07 58.5 31 87.1
Glyma.01G208000 Glycine max HOM05D003894 ORTHO05D004584 5.2e-07 58.5 36 80.6
Hma1.2p1_0316F.1_g122980 Hydrangea macrophylla HOM05D003894 ORTHO05D004584 5.2e-07 58.5 29 96.6
Medtr7g016670 Medicago truncatula HOM05D003894 ORTHO05D004584 5.2e-07 58.5 36 77.8
PSO170G4158 Papaver somniferum HOM05D003894 ORTHO05D004584 5.2e-07 58.5 36 80.6
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 5.2e-07 58.5 36 77.8
Pp3c14_22020 Physcomitrium patens HOM05D003894 ORTHO05D004584 5.2e-07 58.5 36 77.8
Pp3c1_39510 Physcomitrium patens HOM05D003894 ORTHO05D004584 5.2e-07 58.5 36 77.8
CBR_g37463 Chara braunii HOM05D003894 ORTHO05D004584 6.8e-07 58.2 36 77.8
Os03g0102100 Oryza sativa ssp. japonica HOM05D003894 ORTHO05D004584 6.8e-07 58.2 36 77.8
EL10Ac5g12379 Beta vulgaris HOM05D003894 ORTHO05D004584 8.9e-07 57.8 36 75.0
C07p30760 Brassica napus HOM05D001187 ORTHO05D000993 8.9e-07 57.8 110 37.3
BolC7t43619H Brassica oleracea HOM05D001187 ORTHO05D000993 8.9e-07 57.8 110 37.3
Mapoly0048s0089 Marchantia polymorpha HOM05D003894 ORTHO05D004584 8.9e-07 57.8 36 77.8
SEGI_14746 Sequoiadendron giganteum HOM05D003894 ORTHO05D004584 8.9e-07 57.8 36 77.8
Zm00001eb404490 Zea mays HOM05D003894 ORTHO05D004584 8.9e-07 57.8 36 77.8
DCAR_006838 Daucus carota HOM05D003894 ORTHO05D004584 1.2e-06 57.4 36 75.0
DCAR_008499 Daucus carota HOM05D003894 ORTHO05D004584 1.2e-06 57.4 36 75.0
PSO017G7068 Papaver somniferum HOM05D003894 ORTHO05D004584 1.2e-06 57.4 36 77.8
Pp3c2_3170 Physcomitrium patens HOM05D003894 ORTHO05D004584 1.2e-06 57.4 36 75.0
Lsat_1_v5_gn_2_53921 Lactuca sativa HOM05D003894 ORTHO05D004584 1.5e-06 57.0 40 67.5
Nitab4.5_0000618g0110 Nicotiana tabacum HOM05D003894 ORTHO05D004584 1.5e-06 57.0 36 75.0
Solyc06g060770.3 Solanum lycopersicum HOM05D003894 ORTHO05D004584 1.5e-06 57.0 36 75.0
Sopen06g020890 Solanum pennellii HOM05D003894 ORTHO05D004584 1.5e-06 57.0 36 75.0
PGSC0003DMG401011882 Solanum tuberosum HOM05D003894 ORTHO05D004584 1.5e-06 57.0 36 75.0
AagrBONN_evm.TU.Sc2ySwM_117.1331 Anthoceros agrestis HOM05D003894 ORTHO05D004584 2.0e-06 56.6 36 75.0
Lsat_1_v5_gn_1_122420 Lactuca sativa HOM05D003894 ORTHO05D004584 2.0e-06 56.6 31 83.9
Medtr5g012850 Medicago truncatula HOM05D003894 ORTHO05D004584 2.0e-06 56.6 36 75.0
SMO146G0337 Selaginella moellendorffii HOM05D003894 ORTHO05D004584 2.6e-06 56.2 36 72.2
Nitab4.5_0001076g0020 Nicotiana tabacum HOM05D003894 ORTHO05D004584 3.4e-06 55.8 36 72.2
Lsat_1_v5_gn_1_54820 Lactuca sativa HOM05D003894 ORTHO05D004584 4.4e-06 55.5 29 89.7
Lsat_1_v5_gn_3_1181 Lactuca sativa HOM05D003894 ORTHO05D004584 4.4e-06 55.5 29 89.7
Lsat_1_v5_gn_3_140581 Lactuca sativa HOM05D003894 ORTHO05D004584 4.4e-06 55.5 29 89.7
Lsat_1_v5_gn_4_3501 Lactuca sativa HOM05D003894 ORTHO05D004584 4.4e-06 55.5 29 89.7
Lsat_1_v5_gn_6_98401 Lactuca sativa HOM05D003894 ORTHO05D004584 4.4e-06 55.5 29 89.7
Lsat_1_v5_gn_7_43960 Lactuca sativa HOM05D003894 ORTHO05D004584 4.4e-06 55.5 29 89.7
Lsat_1_v5_gn_7_52220 Lactuca sativa HOM05D003894 ORTHO05D004584 4.4e-06 55.5 29 89.7
Lsat_1_v5_gn_8_116920 Lactuca sativa HOM05D003894 ORTHO05D004584 4.4e-06 55.5 29 89.7
Lsat_1_v5_gn_8_19200 Lactuca sativa HOM05D003894 ORTHO05D004584 4.4e-06 55.5 29 89.7


User provided reference genes

Program Settings