Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 1.5e-210 736.1 416 100.0
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 3.1e-208 728.4 416 99.3
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 3.2e-197 691.8 416 95.9
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 2.0e-175 619.4 417 85.4
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 5.5e-173 611.3 427 83.4
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 9.4e-165 583.9 422 82.2
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 8.0e-164 580.9 418 84.2
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 1.0e-155 553.9 419 78.0
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 2.7e-135 486.1 426 70.2
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 6.4e-129 464.9 470 63.2
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 1.2e-124 450.7 468 64.1
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 8.4e-121 438.0 424 67.5
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 1.1e-117 427.6 446 63.5
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 1.3e-92 344.4 419 57.0
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 4.2e-88 329.3 399 57.9
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 1.9e-72 277.3 278 62.2
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 1.0e-65 255.0 426 46.2
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.3e-65 254.6 426 45.8
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 1.5e-61 241.1 423 44.9
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 2.0e-61 240.7 457 42.9
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 5.7e-61 239.2 442 45.2
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 9.7e-61 238.4 443 43.8
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 1.3e-60 238.0 227 64.8
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 4.8e-60 236.1 446 43.0
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 1.8e-59 234.2 211 68.7
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 2.4e-59 233.8 441 42.4
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 3.1e-59 233.4 436 43.3
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 5.3e-59 232.6 430 44.2
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 9.1e-59 231.9 440 43.9
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 1.2e-58 231.5 441 44.0
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 1.3e-57 228.0 460 42.0
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 3.8e-57 226.5 434 42.4
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 3.6e-55 219.9 433 44.1
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 3.6e-55 219.9 396 41.9
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 6.1e-55 219.2 433 42.3
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 1.0e-54 218.4 419 43.9
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 4.0e-54 216.5 430 43.5
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 4.0e-54 216.5 436 43.6
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 5.2e-54 216.1 436 43.8
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 6.7e-54 215.7 446 40.6
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 8.8e-54 215.3 448 41.7
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 1.5e-53 214.5 433 43.4
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 1.5e-53 214.5 435 42.5
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 4.4e-53 213.0 447 41.4
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 1.3e-52 211.5 434 42.2
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 1.7e-52 211.1 438 41.6
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 2.8e-52 210.3 455 39.8
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 4.8e-52 209.5 440 42.5
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 6.3e-52 209.1 391 44.5
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 2.4e-51 207.2 436 42.7
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 2.4e-51 207.2 438 41.1
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 2.4e-51 207.2 435 42.3
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.2e-50 204.9 436 42.4
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 2.7e-50 203.8 420 42.1
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 3.5e-50 203.4 463 41.3
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 1.0e-49 201.8 421 42.0
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 1.0e-49 201.8 429 40.3
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.3e-49 201.4 443 40.2
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 2.2e-49 200.7 293 46.1
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 8.5e-49 198.7 442 40.0
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 1.1e-48 198.4 442 39.6
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 1.1e-48 198.4 430 40.0
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 2.5e-48 197.2 452 40.3
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.5e-48 197.2 417 41.5
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 2.5e-48 197.2 447 40.0
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 4.2e-48 196.4 416 39.7
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 1.2e-47 194.9 427 40.3
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 1.2e-47 194.9 519 36.6
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 2.1e-47 194.1 367 43.6
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 4.0e-46 189.9 427 41.2
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 6.8e-46 189.1 433 40.6
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 8.8e-46 188.7 200 59.5
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 3.4e-45 186.8 222 55.9
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 4.4e-45 186.4 444 39.4
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 7.5e-45 185.7 441 39.7
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 7.5e-45 185.7 451 39.0
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 1.3e-44 184.9 442 38.7
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 1.7e-44 184.5 226 55.8
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 6.3e-44 182.6 298 45.6
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.1e-43 181.8 357 42.6
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 1.8e-43 181.0 425 40.0
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 2.4e-43 180.6 409 39.1
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 4.1e-43 179.9 255 49.8
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 1.6e-42 177.9 397 39.3
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 3.5e-42 176.8 416 40.4
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 4.5e-42 176.4 435 38.9
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 5.9e-42 176.0 444 39.0
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 7.7e-42 175.6 453 39.7
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 7.7e-42 175.6 352 42.9
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 2.9e-41 173.7 386 36.3
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 5.0e-41 172.9 371 40.7
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 8.6e-41 172.2 336 43.8
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 1.1e-40 171.8 363 36.6
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 2.5e-40 170.6 367 42.0
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 3.2e-40 170.2 340 41.5
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 7.2e-40 169.1 321 42.1
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 7.2e-40 169.1 242 46.7
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.2e-39 168.3 232 50.4
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 1.2e-39 168.3 310 42.9
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.6e-39 167.9 291 43.6
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 4.7e-39 166.4 426 37.3
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 1.0e-38 165.2 235 49.8
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 1.4e-38 164.9 411 38.9
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 1.4e-38 164.9 414 36.0
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 5.2e-38 162.9 282 44.7
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 9.8e-37 158.7 418 33.7
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 2.8e-36 157.1 318 40.9
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 8.3e-36 155.6 415 36.1
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 2.7e-34 150.6 270 41.9
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 1.0e-33 148.7 422 34.8
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 1.0e-30 138.7 191 47.6
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 1.4e-30 138.3 303 37.3
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.5e-29 134.8 216 44.9
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 4.9e-28 129.8 170 51.8
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.4e-27 128.3 246 39.4
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.6e-26 124.8 407 33.7
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 1.7e-25 121.3 515 30.7
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 1.2e-21 108.6 238 35.7
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 1.7e-20 104.8 129 46.5
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 1.1e-19 102.1 322 35.1
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 1.2e-18 98.6 459 29.6
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 3.5e-18 97.1 149 45.6
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 1.3e-17 95.1 164 41.5
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 8.1e-15 85.9 321 31.2
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 7.1e-11 72.8 72 58.3
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 1.0e-09 68.9 45 68.9
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 6.2e-07 59.7 143 32.9


User provided reference genes

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