Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 1.4e-94 349.7 191 100.0
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 5.2e-78 294.7 168 94.6
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 2.4e-75 285.8 162 95.1
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 9.3e-75 283.9 161 95.0
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-74 283.5 162 94.4
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 2.7e-74 282.3 162 93.8
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 1.0e-73 280.4 161 93.8
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.1e-72 276.9 160 93.1
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 4.3e-72 275.0 160 92.5
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 9.6e-72 273.9 160 92.5
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-71 273.5 160 91.9
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 3.6e-71 271.9 160 91.2
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 3.6e-71 271.9 160 91.2
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 1.2e-69 266.9 160 89.4
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 6.0e-66 254.6 160 84.4
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 2.5e-64 249.2 160 81.2
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 3.4e-61 238.8 160 77.5
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.8e-61 238.0 160 78.1
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 3.8e-60 235.3 160 78.8
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.1e-59 233.8 160 80.0
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 3.5e-58 228.8 124 98.4
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 1.0e-57 227.3 124 98.4
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 3.3e-56 222.2 161 75.8
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 4.8e-55 218.4 124 94.4
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 1.1e-54 217.2 161 73.9
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 4.5e-53 211.8 162 71.6
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 5.8e-53 211.5 160 68.8
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 4.6e-50 201.8 160 71.9
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.8e-49 199.9 160 70.6
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 7.4e-48 194.5 160 68.8
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.1e-43 180.6 148 66.9
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 7.9e-42 174.5 164 62.8
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 5.1e-41 171.8 167 61.1
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 2.5e-40 169.5 167 59.9
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 2.5e-40 169.5 163 60.1
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 5.7e-40 168.3 166 59.0
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 9.7e-40 167.5 165 60.6
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 1.3e-39 167.2 165 66.7
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.4e-38 163.7 163 60.7
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.4e-38 162.9 163 60.1
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 4.1e-38 162.2 168 59.5
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 5.3e-38 161.8 168 59.5
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.5e-37 160.2 163 60.1
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 2.6e-37 159.5 165 57.0
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.7e-36 156.8 164 58.5
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 2.9e-36 156.0 166 57.8
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 2.9e-36 156.0 166 56.0
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.9e-36 156.0 166 54.8
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 5.0e-36 155.2 168 54.8
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 5.0e-36 155.2 164 57.3
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.0e-36 155.2 166 56.0
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 6.5e-36 154.8 164 57.3
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 6.5e-36 154.8 166 57.2
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 6.5e-36 154.8 166 55.4
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 8.5e-36 154.5 166 57.8
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 8.5e-36 154.5 163 55.2
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 8.5e-36 154.5 166 57.2
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 1.1e-35 154.1 166 57.2
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.1e-35 154.1 169 56.2
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 1.4e-35 153.7 164 55.5
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.5e-35 152.9 167 55.1
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 2.5e-35 152.9 169 55.6
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 2.5e-35 152.9 167 55.7
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.5e-35 152.9 168 56.0
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 2.5e-35 152.9 166 55.4
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 5.5e-35 151.8 172 55.2
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 7.2e-35 151.4 167 54.5
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 7.2e-35 151.4 166 55.4
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 9.4e-35 151.0 167 55.1
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.2e-34 150.6 168 55.4
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 1.2e-34 150.6 169 55.0
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 1.2e-34 150.6 169 53.8
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 1.6e-34 150.2 166 54.2
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.1e-34 149.8 158 58.2
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 2.1e-34 149.8 164 54.9
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.1e-34 149.8 166 53.6
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.7e-34 149.4 166 57.2
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 2.7e-34 149.4 166 54.2
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 6.1e-34 148.3 171 53.8
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 7.9e-34 147.9 169 53.8
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.0e-33 147.5 168 53.6
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.0e-33 147.5 166 53.0
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.0e-33 147.5 166 53.0
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.4e-33 147.1 163 52.8
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 2.3e-33 146.4 165 53.9
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 3.0e-33 146.0 165 55.2
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 3.9e-33 145.6 164 54.3
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 5.1e-33 145.2 167 53.9
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 5.1e-33 145.2 165 53.3
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 6.7e-33 144.8 164 54.9
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 8.8e-33 144.4 163 52.8
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.1e-32 144.1 169 53.3
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 1.5e-32 143.7 163 54.0
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.5e-32 143.7 164 53.7
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.0e-32 143.3 167 53.3
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 2.0e-32 143.3 163 52.8
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 2.6e-32 142.9 165 52.1
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 3.3e-32 142.5 165 53.9
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 7.4e-32 141.4 167 52.1
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 7.4e-32 141.4 166 53.0
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 7.4e-32 141.4 164 53.0
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 7.4e-32 141.4 164 53.0
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 9.7e-32 141.0 166 53.0
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 1.7e-31 140.2 167 52.7
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.2e-31 139.8 167 53.9
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 2.2e-31 139.8 166 53.6
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 2.8e-31 139.4 166 53.0
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 3.7e-31 139.0 162 51.9
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 3.7e-31 139.0 163 51.5
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 6.3e-31 138.3 167 52.1
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 2.4e-30 136.3 164 52.4
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.1e-30 136.0 166 51.2
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 5.3e-30 135.2 162 51.2
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 6.9e-30 134.8 165 51.5
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 6.9e-30 134.8 162 53.7
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.2e-29 134.0 166 50.6
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 1.5e-29 133.7 165 50.9
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 2.6e-29 132.9 166 51.2
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 5.9e-29 131.7 168 49.4
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 7.7e-29 131.3 169 50.3
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.7e-28 130.2 169 50.3
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.2e-28 129.8 163 49.1
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 3.8e-28 129.0 168 49.4
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 1.6e-26 123.6 165 47.3
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 2.7e-26 122.9 119 61.3
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 4.7e-26 122.1 163 47.2
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 6.1e-26 121.7 169 49.1
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 7.9e-26 121.3 175 47.4
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 7.9e-26 121.3 164 48.2
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 1.0e-25 120.9 171 47.4
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 6.7e-25 118.2 165 46.1
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 5.7e-24 115.2 67 95.5
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 5.7e-24 115.2 67 95.5
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.7e-23 113.6 170 44.7
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.7e-23 112.5 130 51.5
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.1e-22 110.9 164 47.0
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.8e-22 110.2 164 42.7
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 1.8e-22 110.2 169 43.8
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 2.4e-22 109.8 176 42.0
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 3.1e-22 109.4 173 46.8
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 5.3e-22 108.6 165 44.8
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.6e-21 107.1 121 54.5
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.7e-20 103.6 166 46.4
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 8.5e-20 101.3 67 83.6
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 5.5e-19 98.6 162 43.8
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 7.2e-19 98.2 67 82.1
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 9.7e-16 87.8 131 45.8
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 1.1e-14 84.3 119 47.1
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 4.1e-14 82.4 108 48.1
A04p15050 Brassica napus HOM05D000880 ORTHO05D014501 4.7e-10 68.9 38 89.5
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.0e-09 67.8 195 32.3
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.0e-09 66.2 88 47.7
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 4.0e-09 65.9 123 38.2
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 4.0e-09 65.9 123 38.2
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 6.8e-09 65.1 81 43.2
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.5e-08 63.9 56 64.3


User provided reference genes

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