Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 3.9e-117 424.9 220 100.0
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 4.7e-115 417.9 220 98.2
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 4.7e-115 417.9 220 98.2
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 6.2e-115 417.5 220 98.6
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 1.7e-104 382.9 220 90.5
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 1.1e-103 380.2 220 89.1
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.4e-97 358.6 221 85.5
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 1.7e-96 356.3 222 84.2
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 1.7e-96 356.3 222 84.7
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 1.1e-95 353.6 221 84.6
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.9e-95 352.8 220 84.1
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 3.2e-95 352.1 185 98.9
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 7.1e-95 350.9 216 85.6
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.5e-92 342.4 238 78.6
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 3.8e-88 328.6 224 77.2
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 5.9e-73 278.1 187 77.5
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 1.4e-71 273.5 153 95.4
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 6.3e-67 258.1 210 63.3
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.8e-66 256.5 210 62.4
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.3e-66 255.0 224 59.8
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 9.0e-66 254.2 228 61.4
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 2.0e-65 253.1 226 61.9
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 2.0e-65 253.1 210 61.9
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 2.6e-65 252.7 219 60.3
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 4.5e-65 251.9 226 62.4
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 5.0e-64 248.4 210 60.5
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 5.0e-64 248.4 217 59.4
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 6.5e-64 248.1 230 59.1
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 4.2e-63 245.4 213 60.1
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 7.2e-63 244.6 208 62.0
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 7.2e-63 244.6 225 55.1
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 1.2e-62 243.8 231 57.6
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 2.7e-62 242.7 220 59.1
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.7e-62 242.7 213 61.5
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 3.6e-62 242.3 216 59.3
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 3.6e-62 242.3 229 57.2
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 7.9e-62 241.1 235 55.3
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 1.8e-61 240.0 225 55.1
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.3e-61 239.6 222 57.2
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 3.0e-61 239.2 210 59.0
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 5.1e-61 238.4 227 58.1
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 2.0e-60 236.5 225 56.4
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 2.6e-60 236.1 179 66.5
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 3.3e-60 235.7 220 57.3
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 5.7e-60 235.0 227 55.9
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 7.4e-60 234.6 231 57.6
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 2.2e-59 233.0 211 56.9
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.8e-59 232.6 232 56.5
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 3.7e-59 232.3 233 56.7
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 3.7e-59 232.3 176 67.0
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 4.8e-59 231.9 222 56.3
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 4.8e-59 231.9 218 58.3
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 6.3e-59 231.5 210 57.6
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 8.2e-59 231.1 232 56.5
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 1.1e-58 230.7 211 58.3
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 1.4e-58 230.3 270 51.9
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.8e-58 229.9 218 57.8
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 2.4e-58 229.6 218 57.3
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 5.3e-58 228.4 210 56.2
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 6.9e-58 228.0 210 56.7
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 9.1e-58 227.6 210 55.7
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 1.2e-57 227.3 213 54.9
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 1.5e-57 226.9 224 54.5
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 2.0e-57 226.5 213 54.5
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 3.4e-57 225.7 210 55.2
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 3.4e-57 225.7 210 55.2
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 4.5e-57 225.3 220 55.5
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 4.5e-57 225.3 218 54.1
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 4.5e-57 225.3 210 55.7
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 5.9e-57 224.9 217 53.0
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 7.7e-57 224.6 204 58.3
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 1.0e-56 224.2 219 55.3
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 2.2e-56 223.0 231 54.5
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 3.8e-56 222.2 190 64.2
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 6.5e-56 221.5 210 54.8
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 8.5e-56 221.1 204 57.4
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 8.5e-56 221.1 217 55.3
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.5e-55 219.5 220 55.9
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 3.2e-55 219.2 212 52.4
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 7.2e-55 218.0 227 50.7
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.2e-54 217.2 234 50.9
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 2.1e-54 216.5 244 51.6
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 1.0e-53 214.2 209 57.9
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 2.3e-53 213.0 226 52.2
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 6.7e-53 211.5 226 51.8
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 6.7e-53 211.5 225 52.9
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.5e-52 210.3 221 53.8
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.5e-52 210.3 210 54.3
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 2.6e-52 209.5 191 58.1
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 8.2e-51 204.5 185 61.1
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.4e-50 203.8 226 50.9
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.6e-49 200.3 161 64.6
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 7.7e-49 198.0 218 50.9
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 2.2e-48 196.4 210 50.5
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 5.5e-47 191.8 355 39.2
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 7.2e-47 191.4 200 55.0
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 4.7e-46 188.7 205 51.2
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 8.0e-46 188.0 254 46.1
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 1.4e-45 187.2 227 48.5
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 6.7e-45 184.9 221 50.2
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 8.8e-45 184.5 222 47.3
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 2.0e-44 183.3 202 48.0
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 3.7e-43 179.1 203 50.2
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 3.7e-43 179.1 150 60.7
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.3e-43 178.3 165 56.4
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.1e-42 177.6 295 39.0
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 2.4e-42 176.4 143 62.2
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 9.1e-42 174.5 164 61.0
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 1.3e-40 170.6 220 45.0
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.5e-39 167.2 220 43.6
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 7.2e-39 164.9 228 41.7
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.7e-38 162.2 265 42.6
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 8.0e-38 161.4 168 55.4
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 8.3e-35 151.4 171 52.6
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 2.7e-33 146.4 232 40.5
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 3.5e-33 146.0 218 41.3
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.5e-31 140.6 114 64.9
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.2e-31 139.0 176 52.8
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 5.5e-31 138.7 113 63.7
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.6e-30 136.0 142 54.2
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 6.1e-30 135.2 221 38.5
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 1.7e-27 127.1 164 48.2
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 2.4e-26 123.2 131 45.8
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 7.8e-25 118.2 92 67.4
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 3.0e-21 106.3 110 49.1
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.8e-21 105.1 94 57.4
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 8.9e-21 104.8 211 33.2
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 3.4e-20 102.8 172 41.9
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.1e-18 97.8 64 68.8
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 4.1e-18 95.9 99 52.5
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 2.0e-17 93.6 160 39.4
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 1.0e-16 91.3 202 31.7
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 8.6e-16 88.2 99 52.5
CARHR182560 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.8e-14 83.2 52 75.0
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 6.2e-14 82.0 84 54.8
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.8e-13 80.5 222 29.7
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 5.2e-13 79.0 130 40.8
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 8.9e-13 78.2 85 50.6
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.1e-10 71.2 66 57.6
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 1.4e-10 70.9 211 29.4
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 4.6e-09 65.9 65 56.9
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 7.8e-09 65.1 64 53.1
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 1.7e-08 63.9 86 44.2
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 7.3e-07 58.5 79 41.8
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 3.6e-06 56.2 148 29.7


User provided reference genes

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