Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 3.1e-190 668.3 343 100.0
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 1.1e-187 659.8 343 99.1
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 1.9e-187 659.1 343 98.8
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 3.2e-187 658.3 343 98.8
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 6.1e-186 654.1 343 98.3
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 8.6e-180 633.6 343 95.0
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 8.0e-178 627.1 343 93.0
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 4.3e-171 604.7 327 95.1
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 4.3e-171 604.7 343 90.4
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 5.6e-171 604.4 345 90.4
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 8.0e-170 600.5 345 90.1
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 1.4e-169 599.7 345 90.1
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 1.7e-164 582.8 342 87.7
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 2.2e-151 539.3 344 80.8
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 1.2e-144 516.9 339 77.9
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 1.9e-139 499.6 340 74.1
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 3.6e-138 495.4 299 81.6
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 3.1e-137 492.3 304 80.3
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.5e-136 490.0 303 79.2
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 2.6e-136 489.2 339 74.3
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 2.6e-136 489.2 330 76.1
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 2.6e-136 489.2 304 80.3
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 3.4e-136 488.8 339 73.7
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 3.4e-136 488.8 276 87.0
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 3.4e-136 488.8 296 81.4
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 4.4e-136 488.4 302 79.1
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 4.4e-136 488.4 294 82.0
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 9.9e-136 487.3 304 79.6
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 9.9e-136 487.3 291 82.1
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 9.9e-136 487.3 294 82.3
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.7e-135 486.5 304 79.3
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 2.2e-135 486.1 294 82.0
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 2.9e-135 485.7 322 75.8
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 2.9e-135 485.7 312 78.8
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.8e-135 485.3 284 83.5
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 3.8e-135 485.3 311 78.8
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 4.9e-135 485.0 302 80.8
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 6.4e-135 484.6 307 79.5
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 6.4e-135 484.6 302 79.5
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 1.1e-134 483.8 310 78.4
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 1.1e-134 483.8 319 77.1
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.4e-134 482.6 296 78.7
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 3.2e-134 482.3 304 80.3
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 3.2e-134 482.3 329 75.7
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 3.2e-134 482.3 300 80.0
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 3.2e-134 482.3 307 78.8
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 4.2e-134 481.9 284 83.5
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 4.2e-134 481.9 296 78.4
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 5.4e-134 481.5 294 81.3
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 5.4e-134 481.5 294 81.3
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 1.6e-133 479.9 279 84.9
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 2.1e-133 479.6 301 78.7
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 2.1e-133 479.6 313 78.9
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 2.7e-133 479.2 310 77.7
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 3.5e-133 478.8 329 74.5
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 3.5e-133 478.8 341 73.0
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 4.6e-133 478.4 310 77.7
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 4.6e-133 478.4 313 76.4
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 6.0e-133 478.0 297 78.1
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 7.8e-133 477.6 330 73.3
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 7.8e-133 477.6 338 73.4
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 1.3e-132 476.9 303 78.9
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 1.7e-132 476.5 317 79.2
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 5.1e-132 474.9 289 79.9
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 2.5e-131 472.6 323 74.9
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 3.3e-131 472.2 301 77.7
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 3.3e-131 472.2 297 78.5
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 4.3e-131 471.9 301 78.7
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 4.3e-131 471.9 333 72.1
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 5.6e-131 471.5 291 78.4
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 1.3e-130 470.3 301 78.4
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 1.6e-130 469.9 278 81.7
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 2.1e-130 469.5 304 78.3
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 3.6e-130 468.8 286 81.5
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 6.9e-129 464.5 294 77.2
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 9.0e-129 464.2 304 77.3
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 1.5e-128 463.4 294 76.5
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 2.0e-128 463.0 307 73.9
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 5.8e-128 461.5 284 78.9
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 7.6e-128 461.1 305 76.4
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 1.9e-126 456.4 285 79.6
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 1.0e-124 450.7 289 76.5
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 3.0e-124 449.1 290 77.2
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 1.5e-123 446.8 273 79.1
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 3.3e-123 445.7 265 81.5
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 4.3e-123 445.3 289 77.2
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 3.1e-121 439.1 333 68.8
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 9.9e-120 434.1 319 67.4
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 1.7e-119 433.3 295 74.9
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 8.4e-119 431.0 288 74.3
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 1.4e-118 430.3 293 76.8
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 1.4e-118 430.3 350 65.1
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 3.2e-118 429.1 255 88.2
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.1e-117 426.4 262 79.4
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 1.3e-106 390.6 323 63.8
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.2e-106 389.8 273 73.3
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 2.6e-104 382.9 211 89.6
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 5.0e-103 378.6 237 80.2
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 9.4e-102 374.4 250 73.6
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.4e-100 370.5 235 78.7
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.3e-98 364.0 235 76.2
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 1.2e-96 357.5 267 64.0
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.7e-95 353.6 244 74.6
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 9.4e-94 347.8 249 73.1
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 3.6e-93 345.9 258 64.0
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 4.4e-91 339.0 204 77.9
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 9.7e-91 337.8 238 73.5
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 2.2e-90 336.7 212 76.9
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.2e-88 330.9 224 75.4
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.0e-80 303.5 265 61.9
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 6.1e-77 292.0 263 53.2
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 2.5e-70 270.0 159 82.4
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 9.4e-70 268.1 176 75.0
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 9.5e-62 241.5 207 60.9
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.0e-55 221.5 159 71.1
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 3.6e-53 213.0 317 40.1
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 4.4e-51 206.1 288 43.8
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 5.8e-51 205.7 120 82.5
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 8.3e-50 201.8 121 81.0
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 7.8e-48 195.3 118 79.7
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 1.0e-47 194.9 116 82.8
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 4.3e-46 189.5 128 74.2
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 7.3e-46 188.7 223 48.4
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 2.6e-35 153.7 287 36.9
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 7.1e-33 145.6 231 40.7
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.6e-32 142.9 78 87.2
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 1.4e-28 131.3 76 84.2
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 5.8e-27 125.9 63 92.1
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 5.8e-27 125.9 286 33.2
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 1.6e-24 117.9 73 74.0
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 1.0e-23 115.2 83 69.9
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.9e-22 110.9 271 30.3
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 1.1e-20 105.1 81 69.1
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 3.4e-19 100.1 75 70.7
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.4e-19 100.1 103 50.5
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 4.8e-13 79.7 165 35.2
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 3.4e-11 73.6 53 73.6
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 1.9e-09 67.8 47 72.3
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 1.9e-06 57.8 59 54.2
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 7.4e-06 55.8 44 63.6


User provided reference genes

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