Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p35920 Brassica napus HOM05D008305 ORTHO05D010625 7.4e-79 297.0 134 100.0
BolC7t44109H Brassica oleracea HOM05D008305 ORTHO05D010625 7.4e-79 297.0 134 100.0
BcaC06g33883 Brassica carinata HOM05D008305 ORTHO05D010625 1.1e-77 293.1 134 98.5
BcaC06g31040 Brassica carinata HOM05D008305 ORTHO05D010625 1.5e-68 262.7 135 89.6
C07p35950 Brassica napus HOM05D008305 ORTHO05D010625 4.4e-63 244.6 135 83.7
BolC7t44112H Brassica oleracea HOM05D008305 ORTHO05D010625 4.4e-63 244.6 135 83.7
BcaC06g33884 Brassica carinata HOM05D008305 ORTHO05D010625 1.8e-61 239.2 136 82.4
C07p35910 Brassica napus HOM05D008305 ORTHO05D010625 1.8e-61 239.2 136 82.4
BolC7t44108H Brassica oleracea HOM05D008305 ORTHO05D010625 1.8e-61 239.2 136 82.4
A06p41710 Brassica napus HOM05D008305 ORTHO05D010625 1.0e-59 233.4 136 80.1
BolC7t44111H Brassica oleracea HOM05D008305 ORTHO05D010625 7.2e-50 200.7 136 73.5
Thhalv10005109m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 1.4e-48 196.4 136 67.6
Sp2g16000 Schrenkiella parvula HOM05D008305 ORTHO05D010625 2.6e-47 192.2 135 67.4
C07p35940 Brassica napus HOM05D008305 ORTHO05D010625 2.7e-44 182.2 105 77.1
CARHR147930 Cardamine hirsuta HOM05D008305 ORTHO05D010625 4.2e-42 174.9 137 62.0
AL4G15990 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 1.7e-38 162.9 135 57.8
AL5G17120 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 1.4e-37 159.8 135 57.0
AL5G16640 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 4.1e-37 158.3 123 59.3
Carub.0005s0497 Capsella rubella HOM05D008305 ORTHO05D010625 4.1e-37 158.3 123 61.8
AT3G27331 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 2.7e-36 155.6 125 58.4
AT3G27329 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 4.6e-36 154.8 123 59.3
Thhalv10026776m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 1.3e-35 153.3 141 56.0
Carub.0007s3551 Capsella rubella HOM05D008305 ORTHO05D010625 1.5e-34 149.8 136 52.9
A06p41680 Brassica napus HOM05D008305 ORTHO05D010625 4.3e-34 148.3 79 87.3
Carub.0005s0612 Capsella rubella HOM05D008305 ORTHO05D010625 7.3e-34 147.5 135 54.8
Thhalv10005287m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 2.1e-33 146.0 134 54.5
Thhalv10005543m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 4.7e-33 144.8 137 53.3
AT3G26860 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 1.0e-32 143.7 118 62.7
AT3G27680 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 1.0e-32 143.7 135 55.6
Carub.0007s3550 Capsella rubella HOM05D008305 ORTHO05D010625 4.0e-32 141.7 136 53.7
Thhalv10026775m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 2.4e-29 132.5 141 49.6
AL5G15840 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 3.2e-29 132.1 136 48.5
Carub.0008s0200 Capsella rubella HOM05D008305 ORTHO05D010625 3.2e-29 132.1 138 50.7
Carub.0007s3549 Capsella rubella HOM05D008305 ORTHO05D010625 4.1e-29 131.7 138 52.2
CARHR147950 Cardamine hirsuta HOM05D008305 ORTHO05D010625 4.6e-28 128.3 116 53.4
Thhalv10026927m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 1.0e-27 127.1 136 51.5
AL1G66430 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 1.7e-27 126.3 98 61.2
CARHR147940 Cardamine hirsuta HOM05D008305 ORTHO05D010625 3.9e-27 125.2 135 49.6
AT3G26870 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 4.3e-26 121.7 136 47.1
C03p17120 Brassica napus HOM05D008305 ORTHO05D010625 5.2e-24 114.8 114 48.2
AT4G08560 Arabidopsis thaliana HOM05D000867 ORTHO05D012315 1.5e-23 113.2 92 64.1
Carub.0005s0622 Capsella rubella HOM05D008305 ORTHO05D010625 2.0e-23 112.8 106 49.1
BolC3t14126H Brassica oleracea HOM05D008305 ORTHO05D010625 1.7e-22 109.8 107 49.5
Carub.0005s0618 Capsella rubella HOM05D008305 ORTHO05D010625 4.9e-22 108.2 98 50.0
Carub.0093s0003 Capsella rubella HOM05D008305 ORTHO05D010625 9.2e-21 104.0 98 49.0
AT2G24880 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 9.5e-18 94.0 92 53.3
BcaC06g33880 Brassica carinata HOM05D001308 ORTHO05D001170 2.8e-17 92.4 47 85.1
Aa31LG2G5710 Aethionema arabicum HOM05D008305 ORTHO05D010625 4.7e-17 91.7 105 44.8
CARHR147970 Cardamine hirsuta HOM05D008305 ORTHO05D002833 1.8e-16 89.7 118 41.5
AL1G41880 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 2.0e-15 86.3 140 36.4
AT1G28305 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 2.6e-15 85.9 139 35.3
BcaB08g37417 Brassica carinata HOM05D003012 ORTHO05D002833 2.2e-14 82.8 144 35.4
BcaB08g37418 Brassica carinata HOM05D003012 ORTHO05D002833 3.7e-14 82.0 144 35.4
CARHR012100 Cardamine hirsuta HOM05D008305 ORTHO05D002833 3.7e-14 82.0 147 33.3
BcaB08g37419 Brassica carinata HOM05D003012 ORTHO05D002833 2.4e-13 79.3 144 34.0
A09p64370 Brassica napus HOM05D003012 ORTHO05D002833 2.4e-13 79.3 144 34.0
BraA09t41781Z Brassica rapa HOM05D003012 ORTHO05D002833 2.4e-13 79.3 144 34.0
Carub.0001s2675 Capsella rubella HOM05D008305 ORTHO05D010625 5.4e-13 78.2 139 36.7
Carub.0006s0330 Capsella rubella HOM05D003012 ORTHO05D002833 7.1e-13 77.8 98 38.8
Sp1g10390 Schrenkiella parvula HOM05D003012 ORTHO05D002833 9.2e-13 77.4 142 32.4
C08p48000 Brassica napus HOM05D003012 ORTHO05D002833 1.2e-12 77.0 144 33.3
BolC8t52338H Brassica oleracea HOM05D003012 ORTHO05D002833 1.2e-12 77.0 144 33.3
Thhalv10005094m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 3.5e-12 75.5 125 39.2
THA.LOC104806861 Tarenaya hassleriana HOM05D008305 ORTHO05D002833 6.0e-12 74.7 98 41.8
AT5G04350 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 3.0e-11 72.4 118 35.6
Thhalv10002162m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 5.1e-11 71.6 123 35.8
Sp6g38380 Schrenkiella parvula HOM05D003012 ORTHO05D002833 6.6e-11 71.2 75 41.3
CARHR208940 Cardamine hirsuta HOM05D003012 ORTHO05D002833 1.1e-10 70.5 113 36.3
BraA09t41780Z Brassica rapa HOM05D003012 ORTHO05D002833 1.5e-10 70.1 143 30.8
A09p64360 Brassica napus HOM05D003012 ORTHO05D002833 1.9e-10 69.7 143 30.8
BcaB07g33307 Brassica carinata HOM05D003012 ORTHO05D002833 3.3e-10 68.9 108 38.0
BcaC07g41761 Brassica carinata HOM05D003012 ORTHO05D002833 3.3e-10 68.9 143 31.5
C08p47990 Brassica napus HOM05D003012 ORTHO05D002833 3.3e-10 68.9 143 31.5
BolC8t52337H Brassica oleracea HOM05D003012 ORTHO05D002833 4.3e-10 68.6 143 31.5
CARHR145180 Cardamine hirsuta HOM05D008305 ORTHO05D010625 7.3e-10 67.8 51 56.9
BcaC06g32139 Brassica carinata HOM05D003012 ORTHO05D002833 1.2e-09 67.0 109 33.0
Aa31LG11G5250 Aethionema arabicum HOM05D013273 ORTHO05D002833 1.6e-09 66.6 86 36.0
BcaC06g32140 Brassica carinata HOM05D003012 ORTHO05D002833 2.8e-09 65.9 109 33.0
Thhalv10015869m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 3.6e-09 65.5 115 32.2
THA.LOC104816675 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 4.7e-09 65.1 90 34.4
Carub.0001s1143 Capsella rubella HOM05D008305 ORTHO05D002833 6.2e-09 64.7 123 31.7
BcaC07g41762 Brassica carinata HOM05D003012 ORTHO05D002833 8.1e-09 64.3 130 30.0
C03p02010 Brassica napus HOM05D003012 ORTHO05D002833 1.1e-08 63.9 138 32.6
BcaB04g19638 Brassica carinata HOM05D003012 ORTHO05D002833 1.4e-08 63.5 91 37.4
BcaC09g48088 Brassica carinata HOM05D003012 ORTHO05D002833 1.4e-08 63.5 125 29.6
BolC9t59989H Brassica oleracea HOM05D003012 ORTHO05D002833 2.4e-08 62.8 90 35.6
A10p31770 Brassica napus HOM05D003012 ORTHO05D002833 4.0e-08 62.0 90 34.4
C09p72460 Brassica napus HOM05D003012 ORTHO05D002833 4.0e-08 62.0 90 34.4
BraA10t45222Z Brassica rapa HOM05D003012 ORTHO05D002833 4.0e-08 62.0 90 34.4
Carub.0003s3529 Capsella rubella HOM05D008344 ORTHO05D011034 4.0e-08 62.0 101 40.6
THA.LOC104816440 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 4.0e-08 62.0 93 36.6
A01p08960 Brassica napus HOM05D008344 ORTHO05D011034 5.2e-08 61.6 108 34.3
C01p10500 Brassica napus HOM05D008344 ORTHO05D011034 5.2e-08 61.6 108 34.3
BolC1t01009H Brassica oleracea HOM05D008344 ORTHO05D011034 5.2e-08 61.6 108 34.3
BraA01t00842Z Brassica rapa HOM05D008344 ORTHO05D011034 5.2e-08 61.6 108 34.3
THA.LOC104816435 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 5.2e-08 61.6 99 33.3
Aa31LG11G5110 Aethionema arabicum HOM05D000220 ORTHO05D000141 6.8e-08 61.2 95 32.6
BcaB01g05894 Brassica carinata HOM05D000149 ORTHO05D000076 8.9e-08 60.8 109 33.0
A03p01640 Brassica napus HOM05D000149 ORTHO05D000076 8.9e-08 60.8 109 33.0
BolC3t12754H Brassica oleracea HOM05D000149 ORTHO05D000076 8.9e-08 60.8 109 33.0
BraA03t09539Z Brassica rapa HOM05D000149 ORTHO05D000076 8.9e-08 60.8 109 33.0
Aa31LG11G5230 Aethionema arabicum HOM05D013273 ORTHO05D015812 1.2e-07 60.5 117 31.6
Carub.0007s1157 Capsella rubella HOM05D008344 ORTHO05D011034 2.0e-07 59.7 105 34.3
AL3G43730 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 2.6e-07 59.3 120 30.0
A01p41800 Brassica napus HOM05D003012 ORTHO05D002833 4.4e-07 58.5 98 31.6
Thhalv10022372m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 4.4e-07 58.5 113 30.1
AL7G23410 Arabidopsis lyrata HOM05D008344 ORTHO05D011034 1.3e-06 57.0 108 31.5
Aa31LG3G3060 Aethionema arabicum HOM05D004904 ORTHO05D002833 2.2e-06 56.2 118 32.2
AT4G29037 Arabidopsis thaliana HOM05D008344 ORTHO05D011034 2.2e-06 56.2 108 30.6
Thhalv10017589m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 2.2e-06 56.2 80 35.0
BcaNung05794 Brassica carinata HOM05D000149 ORTHO05D000076 2.9e-06 55.8 90 33.3
BolC1t05395H Brassica oleracea HOM05D003012 ORTHO05D002833 2.9e-06 55.8 96 32.3
Aa31LG3G3090 Aethionema arabicum HOM05D004904 ORTHO05D002833 3.8e-06 55.5 140 27.9
Carub.0003s2793 Capsella rubella HOM05D003012 ORTHO05D002833 3.8e-06 55.5 95 34.7
THA.LOC104816439 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 3.8e-06 55.5 85 31.8
SGA_v2.0_scaffold2G01340 Striga asiatica HOM05D000256 ORTHO05D000119 4.9e-06 55.1 113 26.5
SGA_v2.0_scaffold2G01339 Striga asiatica HOM05D000256 ORTHO05D000119 6.4e-06 54.7 91 31.9
THA.LOC104816678 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 8.4e-06 54.3 106 28.3


User provided reference genes

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