Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33884 Brassica carinata HOM05D008305 ORTHO05D010625 9.2e-77 290.0 136 100.0
C07p35910 Brassica napus HOM05D008305 ORTHO05D010625 9.2e-77 290.0 136 100.0
BolC7t44108H Brassica oleracea HOM05D008305 ORTHO05D010625 9.2e-77 290.0 136 100.0
A06p41710 Brassica napus HOM05D008305 ORTHO05D010625 3.3e-74 281.6 136 96.3
C07p35920 Brassica napus HOM05D008305 ORTHO05D010625 2.7e-60 235.3 136 82.4
BolC7t44109H Brassica oleracea HOM05D008305 ORTHO05D010625 2.7e-60 235.3 136 82.4
BcaC06g33883 Brassica carinata HOM05D008305 ORTHO05D010625 6.0e-60 234.2 136 81.6
BcaC06g31040 Brassica carinata HOM05D008305 ORTHO05D010625 8.7e-59 230.3 136 80.1
BolC7t44111H Brassica oleracea HOM05D008305 ORTHO05D010625 4.3e-58 228.0 136 82.4
C07p35940 Brassica napus HOM05D008305 ORTHO05D010625 1.2e-55 219.9 105 94.3
C07p35950 Brassica napus HOM05D008305 ORTHO05D010625 3.2e-53 211.8 136 74.3
BolC7t44112H Brassica oleracea HOM05D008305 ORTHO05D010625 3.2e-53 211.8 136 74.3
Thhalv10005109m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 3.1e-48 195.3 136 68.4
Sp2g16000 Schrenkiella parvula HOM05D008305 ORTHO05D010625 2.4e-45 185.7 135 66.7
CARHR147930 Cardamine hirsuta HOM05D008305 ORTHO05D010625 1.1e-40 170.2 137 60.6
Carub.0005s0497 Capsella rubella HOM05D008305 ORTHO05D010625 4.2e-37 158.3 123 61.8
AL4G15990 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 1.6e-36 156.4 135 57.0
Carub.0007s3551 Capsella rubella HOM05D008305 ORTHO05D010625 3.5e-36 155.2 136 55.1
AL5G17120 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 6.0e-36 154.5 135 57.0
AL5G16640 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 2.3e-35 152.5 123 59.3
Thhalv10005543m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 2.3e-35 152.5 137 56.2
AT3G27331 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 8.7e-35 150.6 128 58.6
Thhalv10026776m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 1.9e-34 149.4 141 56.0
AT3G27329 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 2.5e-34 149.1 123 59.3
Carub.0007s3550 Capsella rubella HOM05D008305 ORTHO05D010625 3.3e-34 148.7 136 55.9
Thhalv10005287m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 7.4e-34 147.5 134 55.2
AT3G26860 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 3.1e-32 142.1 118 62.7
Carub.0008s0200 Capsella rubella HOM05D008305 ORTHO05D010625 2.6e-31 139.0 138 52.9
AL5G15840 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 3.4e-31 138.7 136 51.5
AT3G27680 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 3.4e-31 138.7 135 54.8
Carub.0005s0612 Capsella rubella HOM05D008305 ORTHO05D010625 2.9e-30 135.6 136 52.2
Carub.0007s3549 Capsella rubella HOM05D008305 ORTHO05D010625 6.5e-30 134.4 138 53.6
Thhalv10026927m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 7.1e-29 131.0 136 51.5
Thhalv10026775m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 1.6e-28 129.8 141 50.4
AT3G26870 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 6.0e-28 127.9 136 49.3
CARHR147940 Cardamine hirsuta HOM05D008305 ORTHO05D010625 1.8e-27 126.3 135 49.6
CARHR147950 Cardamine hirsuta HOM05D008305 ORTHO05D010625 1.8e-27 126.3 116 52.6
AL1G66430 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 3.3e-26 122.1 98 58.2
C03p17120 Brassica napus HOM05D008305 ORTHO05D010625 2.2e-25 119.4 114 50.9
BolC3t14126H Brassica oleracea HOM05D008305 ORTHO05D010625 5.3e-24 114.8 109 51.4
AT4G08560 Arabidopsis thaliana HOM05D000867 ORTHO05D012315 1.5e-23 113.2 92 63.0
A06p41680 Brassica napus HOM05D008305 ORTHO05D010625 2.6e-23 112.5 80 70.0
Carub.0005s0618 Capsella rubella HOM05D008305 ORTHO05D010625 3.6e-20 102.1 98 50.0
Carub.0005s0622 Capsella rubella HOM05D008305 ORTHO05D010625 4.6e-20 101.7 106 48.1
Carub.0093s0003 Capsella rubella HOM05D008305 ORTHO05D010625 3.0e-19 99.0 98 49.0
CARHR147970 Cardamine hirsuta HOM05D008305 ORTHO05D002833 7.4e-18 94.4 118 42.4
AT2G24880 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 9.7e-18 94.0 92 54.3
Aa31LG2G5710 Aethionema arabicum HOM05D008305 ORTHO05D010625 6.3e-17 91.3 105 44.8
AT3G26880 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 1.1e-16 90.5 118 42.4
BcaB08g37417 Brassica carinata HOM05D003012 ORTHO05D002833 1.8e-16 89.7 144 36.1
BcaB08g37418 Brassica carinata HOM05D003012 ORTHO05D002833 3.1e-16 89.0 144 36.1
BcaB08g37419 Brassica carinata HOM05D003012 ORTHO05D002833 6.9e-16 87.8 144 35.4
A09p64370 Brassica napus HOM05D003012 ORTHO05D002833 2.6e-15 85.9 144 34.7
BraA09t41781Z Brassica rapa HOM05D003012 ORTHO05D002833 2.6e-15 85.9 144 34.7
C08p48000 Brassica napus HOM05D003012 ORTHO05D002833 1.3e-14 83.6 144 34.0
BolC8t52338H Brassica oleracea HOM05D003012 ORTHO05D002833 1.3e-14 83.6 144 34.0
CARHR012100 Cardamine hirsuta HOM05D008305 ORTHO05D002833 1.3e-14 83.6 147 33.3
Thhalv10002162m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 1.7e-14 83.2 123 38.2
Sp1g10390 Schrenkiella parvula HOM05D003012 ORTHO05D002833 1.1e-13 80.5 142 32.4
BraA09t41780Z Brassica rapa HOM05D003012 ORTHO05D002833 3.2e-13 79.0 143 32.2
A09p64360 Brassica napus HOM05D003012 ORTHO05D002833 4.2e-13 78.6 143 32.2
BcaC07g41761 Brassica carinata HOM05D003012 ORTHO05D002833 1.2e-12 77.0 143 32.9
C08p47990 Brassica napus HOM05D003012 ORTHO05D002833 1.2e-12 77.0 143 32.9
BolC8t52337H Brassica oleracea HOM05D003012 ORTHO05D002833 1.6e-12 76.6 143 32.9
AL1G41880 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 2.7e-12 75.9 140 34.3
AT1G28305 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 3.6e-12 75.5 139 33.1
THA.LOC104816680 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 3.6e-12 75.5 88 42.0
Carub.0006s0330 Capsella rubella HOM05D003012 ORTHO05D002833 4.7e-12 75.1 119 37.0
AT5G04350 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 1.0e-11 73.9 118 34.7
CARHR208940 Cardamine hirsuta HOM05D003012 ORTHO05D002833 1.4e-11 73.6 113 35.4
THA.LOC104806861 Tarenaya hassleriana HOM05D008305 ORTHO05D002833 2.3e-11 72.8 113 38.1
BcaB07g33307 Brassica carinata HOM05D003012 ORTHO05D002833 3.0e-11 72.4 108 38.0
BcaC06g32139 Brassica carinata HOM05D003012 ORTHO05D002833 3.9e-11 72.0 140 32.9
BcaC06g33880 Brassica carinata HOM05D001308 ORTHO05D001170 6.7e-11 71.2 47 66.0
BcaC06g32140 Brassica carinata HOM05D003012 ORTHO05D002833 8.8e-11 70.9 140 32.9
C09p72460 Brassica napus HOM05D003012 ORTHO05D002833 2.0e-10 69.7 118 34.7
A10p31770 Brassica napus HOM05D003012 ORTHO05D002833 3.3e-10 68.9 118 34.7
BraA10t45222Z Brassica rapa HOM05D003012 ORTHO05D002833 3.3e-10 68.9 118 34.7
Thhalv10015869m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 3.3e-10 68.9 136 33.8
BcaC09g48088 Brassica carinata HOM05D003012 ORTHO05D002833 4.4e-10 68.6 111 35.1
Thhalv10005094m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 4.4e-10 68.6 127 39.4
THA.LOC104816675 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 4.4e-10 68.6 118 31.4
Aa31LG11G5250 Aethionema arabicum HOM05D013273 ORTHO05D002833 7.4e-10 67.8 86 37.2
BolC9t59989H Brassica oleracea HOM05D003012 ORTHO05D002833 7.4e-10 67.8 90 38.9
THA.LOC104816435 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 7.4e-10 67.8 102 36.3
Sp6g38380 Schrenkiella parvula HOM05D003012 ORTHO05D002833 9.7e-10 67.4 75 41.3
Aa31LG11G5230 Aethionema arabicum HOM05D013273 ORTHO05D015812 1.3e-09 67.0 117 33.3
AL6G13980 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 1.3e-09 67.0 113 32.7
C03p02010 Brassica napus HOM05D003012 ORTHO05D002833 1.3e-09 67.0 135 33.3
BcaB04g19638 Brassica carinata HOM05D003012 ORTHO05D002833 1.7e-09 66.6 121 35.5
BcaC07g41762 Brassica carinata HOM05D003012 ORTHO05D002833 2.2e-09 66.2 130 30.8
AL3G43730 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 3.7e-09 65.5 120 30.8
Carub.0001s1143 Capsella rubella HOM05D008305 ORTHO05D002833 3.7e-09 65.5 123 30.9
THA.LOC104816440 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 6.3e-09 64.7 93 37.6
CARHR145180 Cardamine hirsuta HOM05D008305 ORTHO05D010625 1.1e-08 63.9 51 54.9
THA.LOC104816439 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 2.4e-08 62.8 85 34.1
Carub.0001s2675 Capsella rubella HOM05D008305 ORTHO05D010625 4.1e-08 62.0 120 35.0
A01p41800 Brassica napus HOM05D003012 ORTHO05D002833 5.3e-08 61.6 96 36.5
Aa31LG11G5110 Aethionema arabicum HOM05D000220 ORTHO05D000141 1.2e-07 60.5 95 33.7
BcaB01g05894 Brassica carinata HOM05D000149 ORTHO05D000076 2.0e-07 59.7 109 33.0
A03p01640 Brassica napus HOM05D000149 ORTHO05D000076 2.0e-07 59.7 109 33.0
BolC1t05395H Brassica oleracea HOM05D003012 ORTHO05D002833 2.0e-07 59.7 82 39.0
BolC3t12754H Brassica oleracea HOM05D000149 ORTHO05D000076 2.0e-07 59.7 109 33.0
BraA03t09539Z Brassica rapa HOM05D000149 ORTHO05D000076 2.0e-07 59.7 109 33.0
AT4G29037 Arabidopsis thaliana HOM05D008344 ORTHO05D011034 4.5e-07 58.5 139 28.1
Carub.0003s2723 Capsella rubella HOM05D003012 ORTHO05D002833 1.0e-06 57.4 122 29.5
Carub.0007s1157 Capsella rubella HOM05D008344 ORTHO05D011034 1.0e-06 57.4 124 32.3
AL7G23410 Arabidopsis lyrata HOM05D008344 ORTHO05D011034 1.7e-06 56.6 114 29.8
THA.LOC104811405 Tarenaya hassleriana HOM05D008344 ORTHO05D011034 1.7e-06 56.6 125 28.8
Aa31LG3G3090 Aethionema arabicum HOM05D004904 ORTHO05D002833 2.2e-06 56.2 116 31.0
AT1G28306 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 2.2e-06 56.2 125 34.4
THA.LOC104816678 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 2.2e-06 56.2 76 34.2
AT2G24870 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 2.9e-06 55.8 47 53.2
AL1G49830 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 3.8e-06 55.5 116 32.8
A06p47670 Brassica napus HOM05D004904 ORTHO05D002833 5.0e-06 55.1 105 32.4
BraA06t27634Z Brassica rapa HOM05D004904 ORTHO05D002833 5.0e-06 55.1 105 32.4
A04p29720 Brassica napus HOM05D003012 ORTHO05D002833 8.5e-06 54.3 120 31.7
BraA04t18436Z Brassica rapa HOM05D003012 ORTHO05D002833 8.5e-06 54.3 120 31.7


User provided reference genes

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