Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 9.3e-163 577.0 337 100.0
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 7.9e-146 520.8 352 89.5
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 2.3e-145 519.2 352 89.2
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 3.0e-145 518.8 350 86.9
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 1.4e-142 510.0 342 86.5
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 1.3e-140 503.4 337 88.7
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.0e-137 493.8 352 84.9
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.1e-134 483.8 352 81.0
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.6e-133 479.9 346 84.4
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 3.5e-133 478.8 346 84.1
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 5.9e-133 478.0 352 81.2
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 2.5e-131 472.6 342 83.9
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 4.2e-131 471.9 345 82.9
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 4.2e-131 471.9 345 82.9
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 1.2e-130 470.3 328 88.1
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 7.5e-128 461.1 337 85.5
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 1.8e-121 439.9 344 73.0
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.0e-116 424.1 352 75.9
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 8.0e-114 414.5 350 74.6
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 1.7e-103 380.2 345 64.6
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 3.6e-98 362.5 328 64.6
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 8.1e-98 361.3 329 62.3
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.8e-97 360.1 332 64.8
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 5.2e-97 358.6 329 61.4
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 2.0e-96 356.7 311 65.3
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 9.8e-96 354.4 353 57.8
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 9.8e-96 354.4 319 57.4
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.2e-95 353.2 328 62.8
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 3.7e-95 352.4 340 61.5
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 3.7e-95 352.4 333 57.7
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 3.7e-95 352.4 304 64.8
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 4.9e-95 352.1 328 57.6
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.1e-94 350.9 321 61.4
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 1.1e-94 350.9 324 59.0
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 3.2e-94 349.4 306 68.0
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 4.1e-94 349.0 332 61.1
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 9.2e-94 347.8 314 60.5
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 2.1e-93 346.7 279 71.7
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 2.7e-93 346.3 330 59.1
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 7.8e-93 344.7 303 68.0
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 1.3e-92 344.0 329 61.1
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.7e-92 343.6 302 60.6
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 3.0e-92 342.8 345 55.7
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 3.9e-92 342.4 306 63.1
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 8.6e-92 341.3 337 63.8
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.5e-91 340.5 318 61.0
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 1.9e-91 340.1 307 64.5
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.9e-91 340.1 286 64.7
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.5e-91 339.7 330 65.5
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 5.6e-91 338.6 353 62.9
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 9.5e-91 337.8 328 61.3
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.2e-90 337.4 345 62.3
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 2.1e-90 336.7 308 59.7
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.6e-90 335.9 307 62.2
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 3.6e-90 335.9 331 56.5
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.1e-89 334.3 313 65.5
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 1.8e-89 333.6 289 61.2
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 2.3e-89 333.2 306 64.7
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 2.3e-89 333.2 325 58.8
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 2.3e-89 333.2 306 60.8
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 4.0e-89 332.4 258 66.3
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 6.8e-89 331.6 322 62.1
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 7.6e-88 328.2 298 57.4
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 7.6e-88 328.2 303 58.1
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 2.9e-87 326.2 330 58.5
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 3.7e-87 325.9 222 72.5
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 6.4e-87 325.1 281 70.8
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 6.4e-87 325.1 285 62.8
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 8.4e-87 324.7 310 61.0
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 4.1e-86 322.4 293 62.8
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 5.4e-86 322.0 313 65.5
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 5.4e-86 322.0 298 56.4
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 7.1e-86 321.6 220 71.8
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 9.2e-86 321.2 245 66.1
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 2.7e-85 319.7 304 62.8
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 3.5e-85 319.3 255 66.7
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 1.5e-83 313.9 330 55.5
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 4.3e-83 312.4 255 63.9
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 6.2e-82 308.5 244 64.3
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.8e-81 307.0 328 59.5
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.8e-81 307.0 225 66.2
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 2.4e-81 306.6 252 62.7
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 3.1e-81 306.2 301 60.8
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 5.8e-80 302.0 281 61.6
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 2.2e-79 300.1 219 69.4
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 6.4e-79 298.5 223 68.2
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 6.4e-79 298.5 317 56.8
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 5.4e-78 295.4 360 52.2
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 9.3e-78 294.7 302 58.9
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 6.0e-77 292.0 266 68.8
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 1.3e-76 290.8 270 64.4
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 1.3e-76 290.8 289 63.3
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 3.9e-76 289.3 282 63.5
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 8.7e-76 288.1 308 62.3
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.5e-75 287.3 295 63.7
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 2.5e-75 286.6 280 64.6
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 5.6e-75 285.4 248 60.9
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 7.3e-75 285.0 281 65.5
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 7.3e-75 285.0 281 65.5
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 9.6e-75 284.6 292 55.5
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.3e-74 284.3 271 56.5
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.6e-74 283.9 280 55.7
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 3.6e-74 282.7 313 60.1
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 4.8e-74 282.3 253 64.0
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 4.0e-73 279.3 302 56.6
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.9e-71 273.1 314 54.8
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.5e-67 260.8 267 59.9
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.2e-63 246.9 298 48.0
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.9e-62 243.8 180 65.0
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 7.9e-61 238.4 233 54.1
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 1.0e-60 238.0 274 51.1
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 4.3e-59 232.6 283 53.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 7.6e-56 221.9 192 55.7
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 2.7e-53 213.4 135 75.6
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.8e-52 210.7 296 41.2
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 6.3e-50 202.2 266 47.4
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 9.3e-46 188.3 324 45.1
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 5.1e-44 182.6 135 62.2
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 8.2e-42 175.3 133 66.9
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.4e-36 157.9 287 35.5
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.5e-35 154.5 177 43.5
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 2.0e-35 154.1 254 39.8
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.4e-33 147.1 185 45.9
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 3.4e-32 143.3 90 76.7
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 3.4e-32 143.3 92 75.0
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-25 119.8 207 30.4
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.9e-22 110.9 205 31.7
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 4.7e-21 106.3 173 50.3
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 6.1e-21 105.9 65 76.9
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 8.2e-18 95.5 120 42.5
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.3e-12 77.4 187 29.4
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.2e-11 75.1 191 26.7
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 3.4e-11 73.6 127 33.1
MCO12G371 Micromonas commoda HOM05D005493 ORTHO05D049008 1.3e-10 71.6 232 25.4
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 1.7e-10 71.2 204 27.0
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 3.7e-10 70.1 62 54.8
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.8e-09 67.8 49 67.3
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 1.3e-07 61.6 96 28.1


User provided reference genes

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