Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p30960 Brassica napus HOM05D001916 ORTHO05D010495 4.1e-40 167.5 81 100.0
C06p12470 Brassica napus HOM05D001916 ORTHO05D010495 2.5e-37 158.3 81 95.1
C02p59670 Brassica napus HOM05D001916 ORTHO05D010495 1.6e-36 155.6 81 92.6
BolC9t58607H Brassica oleracea HOM05D001916 ORTHO05D010495 1.4e-32 142.5 77 92.2
A01p30620 Brassica napus HOM05D001916 ORTHO05D010495 9.2e-32 139.8 77 89.6
A01p22010 Brassica napus HOM05D001916 ORTHO05D010495 1.5e-29 132.5 81 81.5
A09p42660 Brassica napus HOM05D001916 ORTHO05D010495 4.0e-27 124.4 102 66.7
BraA09t39741Z Brassica rapa HOM05D001916 ORTHO05D010495 4.0e-27 124.4 102 66.7
BraA07t29099Z Brassica rapa HOM05D001916 ORTHO05D010495 1.6e-23 112.5 60 90.0
BraA05t21250Z Brassica rapa HOM05D001916 ORTHO05D010495 5.9e-23 110.5 65 86.2
A01p30320 Brassica napus HOM05D001916 ORTHO05D010495 2.3e-22 108.6 64 84.4
BraA05t21285Z Brassica rapa HOM05D001916 ORTHO05D010495 3.0e-22 108.2 60 86.7
BraA06t26791Z Brassica rapa HOM05D001916 ORTHO05D010495 4.3e-21 104.4 89 64.0
BraA09t40245Z Brassica rapa HOM05D001916 ORTHO05D010495 1.8e-19 99.0 81 65.4
A07p07110 Brassica napus HOM05D001916 ORTHO05D010495 2.3e-19 98.6 56 85.7
BolC9t54790H Brassica oleracea HOM05D001916 ORTHO05D010495 2.3e-19 98.6 88 64.8
A10p09890 Brassica napus HOM05D001916 ORTHO05D010495 5.2e-19 97.4 89 62.9
C09p25940 Brassica napus HOM05D001916 ORTHO05D010495 5.2e-19 97.4 89 61.8
BraA01t02982Z Brassica rapa HOM05D001916 ORTHO05D010495 5.2e-19 97.4 89 61.8
BolC2t10652H Brassica oleracea HOM05D001916 ORTHO05D010495 8.9e-19 96.7 89 61.8
BolC9t55500H Brassica oleracea HOM05D001916 ORTHO05D010495 8.9e-19 96.7 89 59.6
BraA09t38114Z Brassica rapa HOM05D001916 ORTHO05D010495 1.5e-18 95.9 89 60.7
A01p18630 Brassica napus HOM05D001916 ORTHO05D040737 2.0e-18 95.5 56 83.9
C03p54060 Brassica napus HOM05D001916 ORTHO05D010495 2.0e-18 95.5 89 60.7
BraA01t01813Z Brassica rapa HOM05D001916 ORTHO05D040737 2.0e-18 95.5 56 83.9
C05p11710 Brassica napus HOM05D001916 ORTHO05D010495 2.6e-18 95.1 89 60.7
C05p42310 Brassica napus HOM05D001916 ORTHO05D010495 4.4e-18 94.4 89 60.7
A10p09480 Brassica napus HOM05D001916 ORTHO05D010495 5.8e-18 94.0 81 61.7
C05p19080 Brassica napus HOM05D001916 ORTHO05D010495 7.5e-18 93.6 89 60.7
BolC5t30609H Brassica oleracea HOM05D001916 ORTHO05D010495 7.5e-18 93.6 89 60.7
BraA08t32873Z Brassica rapa HOM05D001916 ORTHO05D010495 7.5e-18 93.6 81 61.7
C07p13870 Brassica napus HOM05D001916 ORTHO05D010495 9.8e-18 93.2 89 61.8
BraA10t43023Z Brassica rapa HOM05D001916 ORTHO05D010495 2.2e-17 92.0 89 60.7
C03p53060 Brassica napus HOM05D001916 ORTHO05D010495 2.9e-17 91.7 89 58.4
BolC9t55951H Brassica oleracea HOM05D001916 ORTHO05D015005 2.9e-17 91.7 81 64.2
BraA01t02107Z Brassica rapa HOM05D001916 ORTHO05D010495 4.9e-17 90.9 89 58.4
C05p42290 Brassica napus HOM05D001916 ORTHO05D010495 6.4e-17 90.5 89 59.6
C09p14260 Brassica napus HOM05D001916 ORTHO05D010495 8.3e-17 90.1 81 60.5
BolC7t43640H Brassica oleracea HOM05D001916 ORTHO05D027536 8.3e-17 90.1 81 61.7
BolC9t54327H Brassica oleracea HOM05D001916 ORTHO05D010495 8.3e-17 90.1 81 60.5
C02p45930 Brassica napus HOM05D001916 ORTHO05D010495 1.1e-16 89.7 85 61.2
BraSC35t45998Z Brassica rapa HOM05D001916 ORTHO05D010495 1.4e-16 89.4 89 58.4
A03p68000 Brassica napus HOM05D001916 ORTHO05D010495 1.9e-16 89.0 85 61.2
BraA01t02673Z Brassica rapa HOM05D001916 ORTHO05D010495 1.9e-16 89.0 85 61.2
BolC5t32957H Brassica oleracea HOM05D001916 ORTHO05D010495 3.2e-16 88.2 81 59.3
BolC5t32958H Brassica oleracea HOM05D001916 ORTHO05D010495 3.2e-16 88.2 81 59.3
BraA09t38135Z Brassica rapa HOM05D001916 ORTHO05D010495 4.1e-16 87.8 50 82.0
BraA01t02549Z Brassica rapa HOM05D001916 ORTHO05D010495 9.2e-16 86.7 47 87.2
C09p18880 Brassica napus HOM05D001916 ORTHO05D010495 3.5e-15 84.7 81 58.0
BraA06t25112Z Brassica rapa HOM05D001916 ORTHO05D010495 7.8e-15 83.6 81 58.0
C09p30900 Brassica napus HOM05D001916 ORTHO05D015005 1.0e-14 83.2 81 59.3
BolC5t33649H Brassica oleracea HOM05D001916 ORTHO05D015005 1.3e-14 82.8 81 60.5
A06p23060 Brassica napus HOM05D001916 ORTHO05D097195 1.7e-14 82.4 43 90.7
BolC2t12027H Brassica oleracea HOM05D001916 ORTHO05D015005 3.0e-14 81.6 81 58.0
BolC2t07105H Brassica oleracea HOM05D001916 ORTHO05D015005 1.2e-12 76.3 81 55.6
A09p25720 Brassica napus HOM05D001916 ORTHO05D010495 2.8e-12 75.1 40 90.0
A09p47870 Brassica napus HOM05D001916 ORTHO05D101698 6.2e-12 73.9 38 92.1
A10p08180 Brassica napus HOM05D001916 ORTHO05D010495 6.2e-12 73.9 80 56.2
BraA01t02382Z Brassica rapa HOM05D001916 ORTHO05D015005 6.2e-12 73.9 77 55.8
BraA03t14517Z Brassica rapa HOM05D001916 ORTHO05D015005 1.1e-11 73.2 81 54.3
A03p54520 Brassica napus HOM05D001916 ORTHO05D003272 1.8e-11 72.4 102 45.1
BcaNung03449 Brassica carinata HOM05D001916 ORTHO05D003272 3.1e-11 71.6 102 44.1
BcaNung03177 Brassica carinata HOM05D001916 ORTHO05D003272 4.0e-11 71.2 102 44.1
BraSC35t45980Z Brassica rapa HOM05D001916 ORTHO05D010495 4.0e-11 71.2 80 55.0
A01p14880 Brassica napus HOM05D001916 ORTHO05D003272 1.2e-10 69.7 101 44.6
A09p28920 Brassica napus HOM05D000096 ORTHO05D000045 1.2e-10 69.7 35 91.4
BraA01t01429Z Brassica rapa HOM05D001916 ORTHO05D003272 1.2e-10 69.7 101 44.6
BraA09t38455Z Brassica rapa HOM05D000096 ORTHO05D010495 1.2e-10 69.7 35 91.4
BcaC09g50975 Brassica carinata HOM05D001916 ORTHO05D003272 3.4e-10 68.2 92 45.7
A01p14860 Brassica napus HOM05D001916 ORTHO05D003272 3.4e-10 68.2 102 43.1
C01p18550 Brassica napus HOM05D001916 ORTHO05D003272 3.4e-10 68.2 102 43.1
BolC1t01780H Brassica oleracea HOM05D001916 ORTHO05D003272 3.4e-10 68.2 102 43.1
BraA01t01428Z Brassica rapa HOM05D001916 ORTHO05D003272 3.4e-10 68.2 102 43.1
AL7G29840 Arabidopsis lyrata HOM05D001916 ORTHO05D003272 9.9e-10 66.6 94 45.7
BNapus_Darmor_BZH_scaffold_170p00060 Brassica napus HOM05D001916 ORTHO05D010495 1.3e-09 66.2 35 88.6
Thhalv10025590m.g Eutrema salsugineum HOM05D001916 ORTHO05D003272 1.7e-09 65.9 94 45.7
Carub.0007s1759 Capsella rubella HOM05D001916 ORTHO05D003272 2.9e-09 65.1 101 41.6
AT4G23570 Arabidopsis thaliana HOM05D001916 ORTHO05D003272 4.9e-09 64.3 94 44.7
C01p18570 Brassica napus HOM05D001916 ORTHO05D003272 8.3e-09 63.5 101 41.6
BolC1t01784H Brassica oleracea HOM05D001916 ORTHO05D003272 8.3e-09 63.5 101 41.6
C02p41850 Brassica napus HOM05D001916 ORTHO05D003272 1.1e-08 63.2 78 46.2
BolC2t08678H Brassica oleracea HOM05D001916 ORTHO05D042570 2.4e-08 62.0 34 85.3
Atru.chr9.2108 Acer truncatum HOM05D001916 ORTHO05D003272 3.2e-08 61.6 99 36.4
BcaC06g35158 Brassica carinata HOM05D001916 ORTHO05D003272 3.2e-08 61.6 102 40.2
C02p26080 Brassica napus HOM05D001916 ORTHO05D042570 5.4e-08 60.8 34 82.4
BraA07t28649Z Brassica rapa HOM05D001916 ORTHO05D010495 5.4e-08 60.8 73 53.4
Os01g0624500 Oryza sativa ssp. japonica HOM05D001916 ORTHO05D003272 1.2e-07 59.7 99 37.4
THA.LOC104813028 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 1.2e-07 59.7 99 38.4
Aa31LG6G6770 Aethionema arabicum HOM05D001916 ORTHO05D003272 1.6e-07 59.3 99 40.4
THA.LOC104814751 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 1.6e-07 59.3 99 37.4
Zm00001eb159420 Zea mays HOM05D001916 ORTHO05D003272 1.6e-07 59.3 98 37.8
AL6G45470 Arabidopsis lyrata HOM05D001916 ORTHO05D003272 2.1e-07 58.9 92 39.1
AT4G11260 Arabidopsis thaliana HOM05D001916 ORTHO05D003272 2.1e-07 58.9 92 39.1
BcaB01g01623 Brassica carinata HOM05D001916 ORTHO05D003272 2.1e-07 58.9 92 39.1
BcaC04g21121 Brassica carinata HOM05D001916 ORTHO05D003272 2.1e-07 58.9 92 39.1
A09p27900 Brassica napus HOM05D001916 ORTHO05D003272 2.1e-07 58.9 92 39.1
C09p35370 Brassica napus HOM05D001916 ORTHO05D003272 2.1e-07 58.9 92 39.1
BolC9t56378H Brassica oleracea HOM05D001916 ORTHO05D003272 2.1e-07 58.9 92 39.1
BraA09t38359Z Brassica rapa HOM05D001916 ORTHO05D003272 2.1e-07 58.9 92 39.1
CARHR255330 Cardamine hirsuta HOM05D001916 ORTHO05D003272 2.7e-07 58.5 93 38.7
Zm00001eb358660 Zea mays HOM05D001916 ORTHO05D003272 2.7e-07 58.5 94 39.4
C02p23890 Brassica napus HOM05D001916 ORTHO05D010495 3.5e-07 58.2 31 87.1
C09p47370 Brassica napus HOM05D001916 ORTHO05D010495 3.5e-07 58.2 31 87.1
Carub.0006s3011 Capsella rubella HOM05D001916 ORTHO05D003272 3.5e-07 58.2 92 39.1
BcaB05g23846 Brassica carinata HOM05D001916 ORTHO05D003272 4.6e-07 57.8 92 39.1
BcaC01g04633 Brassica carinata HOM05D001916 ORTHO05D003272 4.6e-07 57.8 92 39.1
BcaNung01067 Brassica carinata HOM05D001916 ORTHO05D003272 4.6e-07 57.8 102 39.2
A03p29330 Brassica napus HOM05D001916 ORTHO05D003272 4.6e-07 57.8 92 39.1
C03p35430 Brassica napus HOM05D001916 ORTHO05D003272 4.6e-07 57.8 92 39.1
BolC3t15856H Brassica oleracea HOM05D001916 ORTHO05D003272 4.6e-07 57.8 92 39.1
BraA03t12130Z Brassica rapa HOM05D001916 ORTHO05D003272 4.6e-07 57.8 92 39.1
Thhalv10028764m.g Eutrema salsugineum HOM05D001916 ORTHO05D003272 4.6e-07 57.8 92 39.1
Sp6g06190 Schrenkiella parvula HOM05D001916 ORTHO05D003272 4.6e-07 57.8 92 39.1
Sed0015019 Sechium edule HOM05D001916 ORTHO05D003272 6.0e-07 57.4 94 39.4
Sed0008462 Sechium edule HOM05D001916 ORTHO05D003272 7.8e-07 57.0 94 38.3
ECA233G5919 Erigeron canadensis HOM05D001916 ORTHO05D003272 1.0e-06 56.6 92 37.0
HanXRQChr13g0392421 Helianthus annuus HOM05D001916 ORTHO05D003272 1.0e-06 56.6 99 36.4
Lsat_1_v5_gn_8_6441 Lactuca sativa HOM05D001916 ORTHO05D003272 1.3e-06 56.2 92 35.9
Atru.chr1.332 Acer truncatum HOM05D001916 ORTHO05D003272 2.3e-06 55.5 94 36.2
A03p54530 Brassica napus HOM05D001916 ORTHO05D015005 2.3e-06 55.5 46 56.5
ClCG05G008510 Citrullus lanatus HOM05D001916 ORTHO05D003272 2.3e-06 55.5 94 37.2
Glyma.16G176200 Glycine max HOM05D001916 ORTHO05D003272 2.3e-06 55.5 92 35.9
VMungo1215G1038 Vigna mungo HOM05D001916 ORTHO05D003272 3.0e-06 55.1 100 37.0
Phvul.004G104600 Phaseolus vulgaris HOM05D001916 ORTHO05D003272 3.9e-06 54.7 92 35.9
VMungo0464G1486 Vigna mungo HOM05D001916 ORTHO05D003272 3.9e-06 54.7 92 35.9
Cc02_g02210 Coffea canephora HOM05D001916 ORTHO05D003272 5.1e-06 54.3 99 33.3
CsaV3_3G017600 Cucumis sativus L. HOM05D001916 ORTHO05D003272 5.1e-06 54.3 91 38.5
Glyma.09G128800 Glycine max HOM05D001916 ORTHO05D003272 5.1e-06 54.3 92 35.9
Lsat_1_v5_gn_2_131520 Lactuca sativa HOM05D001916 ORTHO05D003272 5.1e-06 54.3 92 35.9
Actinidia33725 Actinidia chinensis HOM05D001916 ORTHO05D003272 6.6e-06 53.9 100 35.0
CiPaw.06G004400 Carya illinoinensis HOM05D001916 ORTHO05D003272 6.6e-06 53.9 92 35.9
HanXRQChr14g0462581 Helianthus annuus HOM05D001916 ORTHO05D003272 6.6e-06 53.9 92 34.8
Phvul.002G160300 Phaseolus vulgaris HOM05D001916 ORTHO05D003272 6.6e-06 53.9 100 35.0
C04p29580 Brassica napus HOM05D000349 ORTHO05D001782 8.6e-06 53.5 46 60.9
CiPaw.12G018800 Carya illinoinensis HOM05D001916 ORTHO05D003272 8.6e-06 53.5 92 35.9
QL02p033314 Quercus lobata HOM05D001916 ORTHO05D003272 8.6e-06 53.5 93 36.6
QL93p0326_0012 Quercus lobata HOM05D001916 ORTHO05D003272 8.6e-06 53.5 93 36.6
Sc19g0000960 Simmondsia chinensis HOM05D001916 ORTHO05D003272 8.6e-06 53.5 99 34.3


User provided reference genes

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