Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p28130 Brassica napus HOM05D000005 ORTHO05D024561 4.0e-75 284.6 139 100.0
BcaC06g34465 Brassica carinata HOM05D000005 ORTHO05D014494 7.0e-56 220.7 280 48.6
C07p28190 Brassica napus HOM05D000005 ORTHO05D014494 2.0e-55 219.2 280 48.2
BcaC06g31567 Brassica carinata HOM05D000005 ORTHO05D014494 9.2e-48 193.7 284 43.3
BolC7t43364H Brassica oleracea HOM05D000005 ORTHO05D024561 1.6e-31 139.8 66 98.5
BolC7t43348H Brassica oleracea HOM05D000005 ORTHO05D024561 1.4e-24 116.7 53 100.0
BolC7t43356H Brassica oleracea HOM05D000005 ORTHO05D024561 1.4e-24 116.7 53 100.0
BolC7t43358H Brassica oleracea HOM05D000005 ORTHO05D024561 1.4e-24 116.7 53 100.0
C02p46070 Brassica napus HOM05D000005 ORTHO05D012152 1.6e-20 103.2 211 33.2
Aa31LG9G7780 Aethionema arabicum HOM05D000005 ORTHO05D012152 1.3e-17 93.6 174 32.8
BcaC06g34479 Brassica carinata HOM05D000005 ORTHO05D014494 1.9e-16 89.7 76 61.8
BolC2t10664H Brassica oleracea HOM05D000005 ORTHO05D012152 3.2e-16 89.0 228 30.7
Carub.0008s0292 Capsella rubella HOM05D000005 ORTHO05D000012 1.5e-13 80.1 77 55.8
BcaC06g34474 Brassica carinata HOM05D000005 ORTHO05D000012 1.1e-11 73.9 69 58.0
C07p28060 Brassica napus HOM05D000005 ORTHO05D000012 1.1e-11 73.9 69 58.0
BolC7t43341H Brassica oleracea HOM05D000005 ORTHO05D000012 1.1e-11 73.9 69 58.0
BolC7t43365H Brassica oleracea HOM05D000005 ORTHO05D012152 2.4e-11 72.8 78 51.3
BcaC06g34478 Brassica carinata HOM05D000005 ORTHO05D012152 3.1e-11 72.4 77 51.9
BolC7t43337H Brassica oleracea HOM05D000005 ORTHO05D012152 3.1e-11 72.4 77 51.9
BcaC06g31566 Brassica carinata HOM05D000005 ORTHO05D012152 4.0e-11 72.0 78 50.0
C03p22280 Brassica napus HOM05D000005 ORTHO05D012152 9.0e-11 70.9 75 52.0
Sp2g10140 Schrenkiella parvula HOM05D000005 ORTHO05D000012 9.0e-11 70.9 67 59.7
BolC3t14611H Brassica oleracea HOM05D000005 ORTHO05D012152 1.2e-10 70.5 75 52.0
AL4G14820 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 1.5e-10 70.1 66 56.1
BcaC01g05800 Brassica carinata HOM05D000005 ORTHO05D012152 1.5e-10 70.1 65 58.5
C03p22290 Brassica napus HOM05D000005 ORTHO05D000012 2.0e-10 69.7 65 58.5
BolC3t14612H Brassica oleracea HOM05D000005 ORTHO05D000012 2.0e-10 69.7 65 58.5
AL4G14810 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 2.6e-10 69.3 65 56.9
Carub.0004s0373 Capsella rubella HOM05D000005 ORTHO05D000012 2.6e-10 69.3 65 58.5
Carub.0008s0291 Capsella rubella HOM05D000005 ORTHO05D012152 3.4e-10 68.9 78 48.7
CARHR176950 Cardamine hirsuta HOM05D000005 ORTHO05D014494 5.8e-10 68.2 67 55.2
Sp2g10150 Schrenkiella parvula HOM05D000005 ORTHO05D012152 5.8e-10 68.2 76 50.0
AL8G14630 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 7.6e-10 67.8 83 37.3
Carub.0004s0374 Capsella rubella HOM05D000005 ORTHO05D012152 7.6e-10 67.8 69 52.2
CARHR175200 Cardamine hirsuta HOM05D000005 ORTHO05D014494 7.6e-10 67.8 70 54.3
CARHR175210 Cardamine hirsuta HOM05D000005 ORTHO05D012152 7.6e-10 67.8 73 50.7
Thhalv10000765m.g Eutrema salsugineum HOM05D000005 ORTHO05D000012 9.9e-10 67.4 71 50.7
BcaC03g16735 Brassica carinata HOM05D000005 ORTHO05D000012 1.3e-09 67.0 76 50.0
CARHR112190 Cardamine hirsuta HOM05D000005 ORTHO05D004260 3.8e-09 65.5 65 55.4
Thhalv10000021m.g Eutrema salsugineum HOM05D000005 ORTHO05D000012 3.8e-09 65.5 71 52.1
BcaC03g16731 Brassica carinata HOM05D000005 ORTHO05D021175 8.4e-09 64.3 68 48.5
A02p28920 Brassica napus HOM05D000005 ORTHO05D021175 8.4e-09 64.3 68 48.5
BolC2t10656H Brassica oleracea HOM05D000005 ORTHO05D021175 8.4e-09 64.3 68 48.5
BraA02t07924Z Brassica rapa HOM05D000005 ORTHO05D021175 8.4e-09 64.3 68 48.5
Thhalv10000019m.g Eutrema salsugineum HOM05D000005 ORTHO05D000012 8.4e-09 64.3 66 54.5
C02p46000 Brassica napus HOM05D000005 ORTHO05D021175 1.9e-08 63.2 79 45.6
Aa31LG9G8220 Aethionema arabicum HOM05D000005 ORTHO05D004260 2.4e-08 62.8 99 39.4
CARHR177330 Cardamine hirsuta HOM05D000005 ORTHO05D000012 2.4e-08 62.8 74 47.3
CARHR176790 Cardamine hirsuta HOM05D000005 ORTHO05D012152 4.2e-08 62.0 76 46.1
BcaB07g30466 Brassica carinata HOM05D000005 ORTHO05D000012 7.1e-08 61.2 66 50.0
BcaB07g30896 Brassica carinata HOM05D000005 ORTHO05D000012 7.1e-08 61.2 88 43.2
BcaC06g34470 Brassica carinata HOM05D000005 ORTHO05D012152 7.1e-08 61.2 76 44.7
C07p28100 Brassica napus HOM05D000005 ORTHO05D012152 7.1e-08 61.2 76 44.7
C07p28220 Brassica napus HOM05D000005 ORTHO05D012152 7.1e-08 61.2 64 53.1
BolC7t43345H Brassica oleracea HOM05D000005 ORTHO05D012152 7.1e-08 61.2 76 44.7
Aa31LG11G6270 Aethionema arabicum HOM05D000005 ORTHO05D021175 9.3e-08 60.8 76 44.7
BolC7t43336H Brassica oleracea HOM05D000005 ORTHO05D004260 9.3e-08 60.8 64 45.3
AL8G13830 Arabidopsis lyrata HOM05D000005 ORTHO05D013676 1.2e-07 60.5 94 41.5
CARHR176940 Cardamine hirsuta HOM05D000005 ORTHO05D012152 1.2e-07 60.5 72 50.0
CARHR176780 Cardamine hirsuta HOM05D000005 ORTHO05D000012 1.6e-07 60.1 83 41.0
Thhalv10000751m.g Eutrema salsugineum HOM05D000005 ORTHO05D013676 1.6e-07 60.1 80 43.8
AL8G13940 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 3.5e-07 58.9 74 44.6
BcaB07g30471 Brassica carinata HOM05D000005 ORTHO05D013676 4.6e-07 58.5 80 40.0
Sp2g09700 Schrenkiella parvula HOM05D000005 ORTHO05D000012 4.6e-07 58.5 99 35.4
BraA09t37762Z Brassica rapa HOM05D000005 ORTHO05D000012 7.9e-07 57.8 67 47.8
AT2G17060 Arabidopsis thaliana HOM05D000005 ORTHO05D000012 1.3e-06 57.0 75 48.0
AT5G17880 Arabidopsis thaliana HOM05D000005 ORTHO05D013134 1.3e-06 57.0 82 43.9
BcaB07g30465 Brassica carinata HOM05D000005 ORTHO05D012152 1.3e-06 57.0 71 43.7
C03p82060 Brassica napus HOM05D000005 ORTHO05D000012 1.3e-06 57.0 73 42.5
BolC3t20484H Brassica oleracea HOM05D000005 ORTHO05D000012 1.3e-06 57.0 73 42.5
AL8G13960 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 1.7e-06 56.6 74 40.5
BraA08t33427Z Brassica rapa HOM05D000005 ORTHO05D000012 1.7e-06 56.6 73 42.5
CARHR112200 Cardamine hirsuta HOM05D000005 ORTHO05D014410 1.7e-06 56.6 66 43.9
C09p27690 Brassica napus HOM05D000005 ORTHO05D000012 2.3e-06 56.2 76 43.4
Sp2g10050 Schrenkiella parvula HOM05D000005 ORTHO05D015249 2.3e-06 56.2 83 32.5
A08p14360 Brassica napus HOM05D000005 ORTHO05D000012 3.9e-06 55.5 73 41.1
Sp2g10160 Schrenkiella parvula HOM05D000005 ORTHO05D012152 3.9e-06 55.5 64 45.3
Aa31LG6G2110 Aethionema arabicum HOM05D000005 ORTHO05D011295 5.1e-06 55.1 70 41.4
Aa31LG6G2120 Aethionema arabicum HOM05D000005 ORTHO05D000012 5.1e-06 55.1 70 41.4
Carub.0006s2909 Capsella rubella HOM05D000005 ORTHO05D013676 5.1e-06 55.1 76 42.1
Carub.0008s0297 Capsella rubella HOM05D000005 ORTHO05D000012 5.1e-06 55.1 74 39.2
Manes.14G148375 Manihot esculenta HOM05D000005 ORTHO05D000012 5.1e-06 55.1 96 36.5
Aa31LG9G7940 Aethionema arabicum HOM05D000005 ORTHO05D000012 6.6e-06 54.7 79 39.2
AL7G34610 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 6.6e-06 54.7 65 44.6
AL8G13870 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 6.6e-06 54.7 87 37.9
arahy.Tifrunner.gnm1.ann1.P0V96M Arachis hypogaea HOM05D000005 ORTHO05D000012 6.6e-06 54.7 117 29.1
Thhalv10001215m.g Eutrema salsugineum HOM05D000005 ORTHO05D015249 8.7e-06 54.3 67 37.3
QL12p008244 Quercus lobata HOM05D000005 ORTHO05D000012 8.7e-06 54.3 130 30.8


User provided reference genes

Program Settings