Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p26410 Brassica napus HOM05D003431 ORTHO05D027670 8.1e-82 307.0 151 100.0
A02p15310 Brassica napus HOM05D003431 ORTHO05D027670 2.4e-78 295.4 151 96.7
A04p21520 Brassica napus HOM05D003431 ORTHO05D027670 2.4e-78 295.4 151 96.7
BcaC06g34618 Brassica carinata HOM05D003431 ORTHO05D027670 5.3e-49 198.0 102 97.1
A07p12440 Brassica napus HOM05D003431 ORTHO05D005152 9.7e-35 150.6 99 72.7
BraA07t29025Z Brassica rapa HOM05D003431 ORTHO05D005152 9.7e-35 150.6 99 72.7
BcaC06g35235 Brassica carinata HOM05D003431 ORTHO05D005152 6.3e-34 147.9 99 72.7
C07p18390 Brassica napus HOM05D003431 ORTHO05D005152 6.3e-34 147.9 99 72.7
BolC7t42349H Brassica oleracea HOM05D003431 ORTHO05D005152 3.1e-33 145.6 99 70.7
BcaB03g12039 Brassica carinata HOM05D003431 ORTHO05D005152 4.1e-33 145.2 99 70.7
BcaC05g26690 Brassica carinata HOM05D003431 ORTHO05D005152 4.1e-33 145.2 99 70.7
CARHR026300 Cardamine hirsuta HOM05D003431 ORTHO05D005152 6.9e-33 144.4 99 70.7
Sp1g23030 Schrenkiella parvula HOM05D003431 ORTHO05D005152 2.6e-32 142.5 99 69.7
BraA08t34627Z Brassica rapa HOM05D003431 ORTHO05D005152 3.4e-32 142.1 99 68.7
C05p25340 Brassica napus HOM05D003431 ORTHO05D005152 4.5e-32 141.7 99 69.7
BcaC01g01674 Brassica carinata HOM05D003431 ORTHO05D005152 1.3e-31 140.2 99 67.7
A08p26810 Brassica napus HOM05D003431 ORTHO05D005152 1.3e-31 140.2 99 67.7
C03p73140 Brassica napus HOM05D003431 ORTHO05D005152 1.3e-31 140.2 99 67.7
BolC3t19610H Brassica oleracea HOM05D003431 ORTHO05D005152 1.3e-31 140.2 99 67.7
BcaC05g26486 Brassica carinata HOM05D003431 ORTHO05D005152 1.7e-31 139.8 99 68.7
A09p39090 Brassica napus HOM05D003431 ORTHO05D005152 1.7e-31 139.8 99 68.7
BraA09t39409Z Brassica rapa HOM05D003431 ORTHO05D005152 1.7e-31 139.8 99 68.7
BolC5t31269H Brassica oleracea HOM05D003431 ORTHO05D005152 5.0e-31 138.3 99 68.7
Thhalv10008680m.g Eutrema salsugineum HOM05D003431 ORTHO05D005152 1.4e-30 136.7 99 67.7
Aa31LG7G9280 Aethionema arabicum HOM05D003431 ORTHO05D005152 9.4e-30 134.0 99 64.6
BcaB03g14023 Brassica carinata HOM05D003431 ORTHO05D005152 9.4e-30 134.0 107 64.5
AT1G25260 Arabidopsis thaliana HOM05D003431 ORTHO05D005152 1.2e-29 133.7 99 64.6
AL1G40100 Arabidopsis lyrata HOM05D003431 ORTHO05D005152 1.6e-29 133.3 99 63.6
Carub.0001s2531 Capsella rubella HOM05D003431 ORTHO05D005152 4.6e-29 131.7 99 62.6
Thecc.02G041300 Theobroma cacao HOM05D003431 ORTHO05D005152 4.8e-26 121.7 99 57.6
CANSAT11G1865 Cannabis sativa HOM05D003431 ORTHO05D005152 1.1e-25 120.6 99 55.6
Manes.07G013300 Manihot esculenta HOM05D003431 ORTHO05D005152 1.4e-25 120.2 99 56.6
TAR633G0411 Trochodendron aralioides HOM05D003431 ORTHO05D005152 1.4e-25 120.2 99 55.6
Potri.001G460100 Populus trichocarpa HOM05D003431 ORTHO05D005152 1.8e-25 119.8 99 57.6
Cpa.g.sc2.27 Carica papaya HOM05D003431 ORTHO05D005152 2.4e-25 119.4 97 60.8
Duzib248G1379 Durio zibethinus HOM05D003431 ORTHO05D005152 2.4e-25 119.4 99 57.6
Lsat_1_v5_gn_7_77981 Lactuca sativa HOM05D003431 ORTHO05D005152 2.4e-25 119.4 99 56.6
CiPaw.05G042700 Carya illinoinensis HOM05D003431 ORTHO05D005152 4.1e-25 118.6 99 55.6
Duzib132G0664 Durio zibethinus HOM05D003431 ORTHO05D005152 4.1e-25 118.6 99 55.6
Gohir.A01G176900 Gossypium hirsutum HOM05D003431 ORTHO05D005152 4.1e-25 118.6 97 57.7
Gohir.D01G167700 Gossypium hirsutum HOM05D003431 ORTHO05D005152 4.1e-25 118.6 97 57.7
Gorai.002G208400 Gossypium raimondii HOM05D003431 ORTHO05D005152 4.1e-25 118.6 97 57.7
TWI23G0077 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 5.3e-25 118.2 99 57.6
Sabra16G0311800 Salix brachista HOM05D003431 ORTHO05D005152 6.9e-25 117.9 99 56.6
TWI14G0641 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 1.2e-24 117.1 99 55.6
Atru.chr6.1079 Acer truncatum HOM05D003431 ORTHO05D005152 1.5e-24 116.7 99 57.6
Actinidia39056 Actinidia chinensis HOM05D003431 ORTHO05D005152 1.5e-24 116.7 99 55.6
DCAR_013995 Daucus carota HOM05D003431 ORTHO05D005152 1.5e-24 116.7 99 56.6
Manes.10G132200 Manihot esculenta HOM05D003431 ORTHO05D005152 1.5e-24 116.7 99 55.6
CiPaw.06G149000 Carya illinoinensis HOM05D003431 ORTHO05D005152 2.0e-24 116.3 99 54.5
Potri.011G156300 Populus trichocarpa HOM05D003431 ORTHO05D005152 2.6e-24 115.9 99 56.6
QL02p098641 Quercus lobata HOM05D003431 ORTHO05D005152 3.4e-24 115.5 99 53.5
Atru.chr6.1030 Acer truncatum HOM05D003431 ORTHO05D005152 4.5e-24 115.2 99 57.6
PGR142G4046 Punica granatum HOM05D003431 ORTHO05D005152 5.9e-24 114.8 99 54.5
MD15G1418800 Malus domestica HOM05D003431 ORTHO05D005152 7.7e-24 114.4 99 54.5
Sabra11G0143500 Salix brachista HOM05D003431 ORTHO05D005152 7.7e-24 114.4 99 54.5
VMungo0540G2199 Vigna mungo HOM05D003431 ORTHO05D005152 7.7e-24 114.4 99 54.5
Nn2g13208 Nelumbo nucifera HOM05D003431 ORTHO05D005152 1.0e-23 114.0 99 51.5
SalBow6G0908 Salvia bowleyana HOM05D003431 ORTHO05D005152 1.3e-23 113.6 99 52.5
Glyma.08G184300 Glycine max HOM05D003431 ORTHO05D005152 1.7e-23 113.2 99 53.5
Hma1.2p1_0557F.1_g178330 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.7e-23 113.2 96 56.2
Hma1.2p1_0557F.1_g178340 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.7e-23 113.2 96 56.2
Hma1.2p1_2850F.1_g329406 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.7e-23 113.2 96 56.2
THA.LOC104807949 Tarenaya hassleriana HOM05D003431 ORTHO05D005152 1.7e-23 113.2 99 55.6
MD08G1225200 Malus domestica HOM05D003431 ORTHO05D005152 2.2e-23 112.8 99 53.5
GSVIVG01023018001 Vitis vinifera HOM05D003431 ORTHO05D005152 2.2e-23 112.8 99 51.5
Haze_13054 Corylus avellana HOM05D003431 ORTHO05D005152 2.9e-23 112.5 99 53.5
HanXRQChr01g0021831 Helianthus annuus HOM05D003431 ORTHO05D005152 2.9e-23 112.5 99 53.5
HanXRQChr03g0066511 Helianthus annuus HOM05D003431 ORTHO05D005152 2.9e-23 112.5 99 52.5
Oeu000195.1 Olea europaea HOM05D003431 ORTHO05D005152 2.9e-23 112.5 99 52.5
Ca_00090_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 3.8e-23 112.1 99 52.5
Ca_29929_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 3.8e-23 112.1 99 52.5
Lj6g0011327 Lotus japonicus HOM05D003431 ORTHO05D005152 3.8e-23 112.1 99 53.5
Prupe.1G562900 Prunus persica HOM05D003431 ORTHO05D005152 3.8e-23 112.1 99 52.5
Aqoxy4G02442 Aquilegia oxysepala HOM05D003431 ORTHO05D005152 5.0e-23 111.7 96 54.2
Glyma.15G048200 Glycine max HOM05D003431 ORTHO05D005152 5.0e-23 111.7 99 53.5
MSTRG.16533 Avicennia marina HOM05D003431 ORTHO05D005152 6.5e-23 111.3 99 49.5
CSS0006665 Camellia sinensis var. sinensis HOM05D003431 ORTHO05D005152 6.5e-23 111.3 99 52.5
ECA236G3864 Erigeron canadensis HOM05D003431 ORTHO05D005152 6.5e-23 111.3 99 52.5
Psat1g220040 Pisum sativum HOM05D003431 ORTHO05D005152 6.5e-23 111.3 99 52.5
Rhsim11G0131700 Rhododendron simsii HOM05D003431 ORTHO05D005152 6.5e-23 111.3 99 51.5
Sc11g0006640 Simmondsia chinensis HOM05D003431 ORTHO05D005152 6.5e-23 111.3 99 52.5
vmacro01777 Vaccinium macrocarpon HOM05D003431 ORTHO05D005152 6.5e-23 111.3 96 54.2
Dinv24261 Davidia involucrata HOM05D003431 ORTHO05D005152 8.5e-23 110.9 99 50.5
FAN04G1904 Fragaria x ananassa HOM05D003431 ORTHO05D005152 8.5e-23 110.9 99 51.5
SHI16687 Sapria himalayana HOM05D003431 ORTHO05D005152 8.5e-23 110.9 97 53.6
Cfa014508 Carpinus fangiana HOM05D003431 ORTHO05D005152 1.1e-22 110.5 99 52.5
Oeu026055.1 Olea europaea HOM05D003431 ORTHO05D005152 1.4e-22 110.2 99 51.5
PSO170G4153 Papaver somniferum HOM05D003431 ORTHO05D005152 1.4e-22 110.2 99 51.5
Peaxi162Scf00011g00014 Petunia axillaris HOM05D003431 ORTHO05D005152 1.4e-22 110.2 99 53.5
Sed0002836 Sechium edule HOM05D003431 ORTHO05D005152 1.4e-22 110.2 99 50.5
Sed0006026 Sechium edule HOM05D003431 ORTHO05D005152 1.4e-22 110.2 99 50.5
Solyc01g104470.3 Solanum lycopersicum HOM05D003431 ORTHO05D005152 1.4e-22 110.2 99 53.5
PGSC0003DMG400023745 Solanum tuberosum HOM05D003431 ORTHO05D005152 1.4e-22 110.2 99 53.5
FvH4_5g30060 Fragaria vesca HOM05D003431 ORTHO05D005152 1.9e-22 109.8 99 50.5
FAN08G2387 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.9e-22 109.8 99 50.5
FAN18G1423 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.9e-22 109.8 99 50.5
MBI15_g28822_MAGBIO Magnolia biondii HOM05D003431 ORTHO05D005152 2.5e-22 109.4 99 50.5
Phvul.006G212200 Phaseolus vulgaris HOM05D003431 ORTHO05D005152 2.5e-22 109.4 99 53.5
RcHm_v2.0_Chr7g0224251 Rosa chinensis HOM05D003431 ORTHO05D005152 2.5e-22 109.4 99 50.5
EL10Ac3g07449 Beta vulgaris HOM05D003431 ORTHO05D005152 3.2e-22 109.0 99 52.5
Sopen01g046970 Solanum pennellii HOM05D003431 ORTHO05D005152 3.2e-22 109.0 99 52.5
FAN13G1098 Fragaria x ananassa HOM05D003431 ORTHO05D005152 4.2e-22 108.6 99 49.5
arahy.Tifrunner.gnm1.ann1.N8P1ZJ Arachis hypogaea HOM05D003431 ORTHO05D005152 5.5e-22 108.2 99 52.5
CDE12G0598 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 5.5e-22 108.2 99 47.5
SGA_v2.0_scaffold1G00326 Striga asiatica HOM05D003431 ORTHO05D005152 5.5e-22 108.2 99 47.5
arahy.Tifrunner.gnm1.ann1.I5HCXG Arachis hypogaea HOM05D003431 ORTHO05D005152 7.2e-22 107.8 99 51.5
AUR62018551 Chenopodium quinoa HOM05D003431 ORTHO05D005152 7.2e-22 107.8 99 51.5
AUR62020868 Chenopodium quinoa HOM05D003431 ORTHO05D005152 9.4e-22 107.5 99 50.5
Dinv19350 Davidia involucrata HOM05D003431 ORTHO05D005152 9.4e-22 107.5 95 53.7
PSO017G6291 Papaver somniferum HOM05D003431 ORTHO05D005152 1.6e-21 106.7 99 50.5
CDE06G1320 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 2.1e-21 106.3 99 48.5
Lsat_1_v5_gn_9_116360 Lactuca sativa HOM05D003431 ORTHO05D005152 2.7e-21 105.9 99 49.5
Lj9A308T36 Lonicera japonica HOM05D003431 ORTHO05D005152 2.7e-21 105.9 99 49.5
Cc02_g22270 Coffea canephora HOM05D003431 ORTHO05D005152 3.6e-21 105.5 99 48.5
Lalb_Chr18g0060821 Lupinus albus HOM05D003431 ORTHO05D005152 3.6e-21 105.5 99 48.5
Ciclev10002376m.g Citrus clementina HOM05D003431 ORTHO05D005152 4.7e-21 105.1 99 54.5
unitig_22.g6119 Utricularia gibba HOM05D003431 ORTHO05D005152 4.7e-21 105.1 99 48.5
PSO339G0293 Papaver somniferum HOM05D003431 ORTHO05D005152 6.1e-21 104.8 99 48.5
CsaV3_2G018120 Cucumis sativus L. HOM05D003431 ORTHO05D005152 7.9e-21 104.4 99 47.5
Medtr2g007780 Medicago truncatula HOM05D003431 ORTHO05D005152 7.9e-21 104.4 99 47.5
Migut.B00667 Erythranthe guttata HOM05D003431 ORTHO05D005152 1.0e-20 104.0 96 49.0
PSO801G0645 Papaver somniferum HOM05D003431 ORTHO05D005152 1.0e-20 104.0 99 48.5
Hund24426 Selenicereus undatus HOM05D003431 ORTHO05D005152 1.4e-20 103.6 99 49.5
Nitab4.5_0010140g0020 Nicotiana tabacum HOM05D003431 ORTHO05D005152 3.0e-20 102.4 99 52.5
Eucgr.I02710 Eucalyptus grandis HOM05D003431 ORTHO05D005152 5.2e-20 101.7 96 50.0
TPR.G39937 Trifolium pratense HOM05D003431 ORTHO05D005152 6.7e-20 101.3 99 48.5
ATR0174G027 Amborella trichopoda HOM05D003431 ORTHO05D005152 2.0e-19 99.8 99 44.4
HPP92_026977 Vanilla planifolia HOM05D003431 ORTHO05D005152 9.7e-19 97.4 99 45.5
Nitab4.5_0005539g0060 Nicotiana tabacum HOM05D003431 ORTHO05D005152 4.8e-18 95.1 97 52.6
AagrBONN_evm.TU.Sc2ySwM_369.396 Anthoceros agrestis HOM05D003431 ORTHO05D005152 6.3e-18 94.7 96 47.9
HPP92_015419 Vanilla planifolia HOM05D003431 ORTHO05D005152 1.1e-17 94.0 99 44.4
BolC5t29949H Brassica oleracea HOM05D003431 ORTHO05D005152 4.1e-17 92.0 68 69.1
SMO367G0584 Selaginella moellendorffii HOM05D003431 ORTHO05D005152 7.0e-17 91.3 99 43.4
SGA_v2.0_scaffold110G31286 Striga asiatica HOM05D003431 ORTHO05D005152 7.0e-17 91.3 120 40.0
TAR636G0765 Trochodendron aralioides HOM05D003431 ORTHO05D005152 1.6e-16 90.1 76 53.9
Pp3c11_25500 Physcomitrium patens HOM05D003431 ORTHO05D005152 2.6e-16 89.4 94 44.7
ClCG02G000650 Citrullus lanatus HOM05D003431 ORTHO05D005152 1.3e-15 87.0 102 45.1
Mapoly0015s0017 Marchantia polymorpha HOM05D003431 ORTHO05D005152 2.9e-15 85.9 96 40.6
Zm00001eb094240 Zea mays HOM05D003431 ORTHO05D005152 5.0e-15 85.1 98 39.8
Os11g0105400 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 1.1e-14 84.0 98 38.8
Pp3s128_30 Physcomitrium patens HOM05D003431 ORTHO05D005152 1.5e-14 83.6 96 41.7
Os12g0105200 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 1.9e-14 83.2 98 38.8
Zm00001eb163260 Zea mays HOM05D003431 ORTHO05D005152 1.9e-14 83.2 98 38.8
A05p13450 Brassica napus HOM05D003431 ORTHO05D100885 4.0e-12 75.5 90 48.9
CBR_g26270 Chara braunii HOM05D003431 ORTHO05D005152 2.8e-10 69.3 67 47.8
Hma1.2p1_1038F.1_g250760 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 7.0e-09 64.7 48 58.3
A05p19340 Brassica napus HOM05D003431 ORTHO05D014368 1.6e-08 63.5 52 67.3
C05p02190 Brassica napus HOM05D003431 ORTHO05D014368 2.7e-08 62.8 52 63.5
Cfa023894 Carpinus fangiana HOM05D003431 ORTHO05D005152 3.5e-08 62.4 96 33.3
BcaC07g37686 Brassica carinata HOM05D003431 ORTHO05D032197 7.7e-08 61.2 69 52.2
CAN.G1352.24 Capsicum annuum HOM05D003431 ORTHO05D005152 7.7e-08 61.2 98 36.7
SEGI_34754 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 1.0e-07 60.8 49 53.1
Cre06.g261700 Chlamydomonas reinhardtii HOM05D003431 ORTHO05D005152 1.3e-07 60.5 96 28.1
MCO04G167 Micromonas commoda HOM05D003431 ORTHO05D005152 2.9e-07 59.3 95 30.5
Ah.04g149460 Amaranthus hybridus HOM05D003431 ORTHO05D005152 3.8e-07 58.9 47 53.2
BolC6t38529H Brassica oleracea HOM05D003431 ORTHO05D014368 1.1e-06 57.4 45 68.9
BcaC05g27507 Brassica carinata HOM05D003431 ORTHO05D014368 1.9e-06 56.6 47 61.7
CsaV3_1G025580 Cucumis sativus L. HOM05D003431 ORTHO05D005152 5.5e-06 55.1 51 43.1


User provided reference genes

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