Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p19900 Brassica napus HOM05D023722 ORTHO05D016766 1.4e-257 892.5 467 100.0
BolC7t42509H Brassica oleracea HOM05D023722 ORTHO05D016766 1.4e-257 892.5 467 100.0
BcaC06g30957 Brassica carinata HOM05D000855 ORTHO05D001716 5.2e-71 272.7 206 73.3
Sp2g16900 Schrenkiella parvula HOM05D000855 ORTHO05D001716 1.7e-58 231.1 269 55.0
Thhalv10005709m.g Eutrema salsugineum HOM05D000855 ORTHO05D001716 1.9e-57 227.6 219 60.7
Carub.0005s0638 Capsella rubella HOM05D000855 ORTHO05D001716 1.4e-52 211.5 194 61.9
AL5G17342 Arabidopsis lyrata HOM05D000855 ORTHO05D001716 1.9e-52 211.1 288 48.6
AT3G27860 Arabidopsis thaliana HOM05D000855 ORTHO05D001716 1.9e-52 211.1 204 62.7
BcaC01g06502 Brassica carinata HOM05D000106 ORTHO05D000160 4.0e-47 193.4 149 73.2
C03p13370 Brassica napus HOM05D000106 ORTHO05D000160 9.6e-41 172.2 132 72.0
BolC3t13799H Brassica oleracea HOM05D000106 ORTHO05D000160 9.6e-41 172.2 132 72.0
CARHR261750 Cardamine hirsuta HOM05D000855 ORTHO05D001716 9.6e-33 145.6 161 51.6
THA.LOC104805390 Tarenaya hassleriana HOM05D000855 ORTHO05D001716 3.1e-31 140.6 228 41.2
AL7G49610 Arabidopsis lyrata HOM05D000855 ORTHO05D001716 2.0e-30 137.9 146 53.4
BcaB02g07949 Brassica carinata HOM05D000855 ORTHO05D001716 7.6e-30 136.0 148 53.4
BcaC08g44451 Brassica carinata HOM05D000855 ORTHO05D001716 2.2e-29 134.4 166 47.6
BolC6t37101H Brassica oleracea HOM05D000855 ORTHO05D001716 2.2e-29 134.4 166 47.6
BraA07t28228Z Brassica rapa HOM05D023722 ORTHO05D016766 2.9e-29 134.0 83 89.2
A07p20230 Brassica napus HOM05D000855 ORTHO05D001716 8.4e-29 132.5 161 48.4
Thhalv10027630m.g Eutrema salsugineum HOM05D000855 ORTHO05D001716 8.4e-29 132.5 152 50.7
BraA07t29724Z Brassica rapa HOM05D000855 ORTHO05D001716 1.9e-28 131.3 161 47.2
C06p19000 Brassica napus HOM05D000855 ORTHO05D001716 3.2e-28 130.6 161 47.8
AT5G40340 Arabidopsis thaliana HOM05D000855 ORTHO05D001716 9.3e-28 129.0 134 53.0
Sp7g01590 Schrenkiella parvula HOM05D000855 ORTHO05D001716 1.6e-27 128.3 145 50.3
Aa31LG9G1290 Aethionema arabicum HOM05D000855 ORTHO05D001716 2.7e-27 127.5 164 45.7
BolC9t53565H Brassica oleracea HOM05D021391 ORTHO05D016766 2.7e-27 127.5 115 68.7
Carub.0007s3528 Capsella rubella HOM05D000855 ORTHO05D001716 6.0e-27 126.3 146 47.3
CARHR149330 Cardamine hirsuta HOM05D000855 ORTHO05D001716 3.9e-26 123.6 108 61.1
A06p40850 Brassica napus HOM05D000855 ORTHO05D001716 9.0e-23 112.5 260 36.2
C04p46790 Brassica napus HOM05D000059 ORTHO05D015367 1.7e-21 108.2 106 64.2
BolC5t31391H Brassica oleracea HOM05D000059 ORTHO05D015367 2.9e-21 107.5 106 63.2
BcaC06g33778 Brassica carinata HOM05D000855 ORTHO05D001716 5.0e-21 106.7 265 35.5
C07p37020 Brassica napus HOM05D000855 ORTHO05D001716 5.0e-21 106.7 265 35.5
BolC7t44214H Brassica oleracea HOM05D000855 ORTHO05D001716 5.0e-21 106.7 265 35.5
BraA06t27007Z Brassica rapa HOM05D000855 ORTHO05D001716 8.4e-21 105.9 260 35.4
Actinidia35751 Actinidia chinensis HOM05D000855 ORTHO05D001716 6.9e-15 86.3 202 33.7
Nitab4.5_0008510g0010 Nicotiana tabacum HOM05D000855 ORTHO05D001716 9.0e-15 85.9 201 30.3
Nitab4.5_0014517g0020 Nicotiana tabacum HOM05D000855 ORTHO05D001716 9.0e-15 85.9 202 30.7
CiPaw.04G026000 Carya illinoinensis HOM05D000855 ORTHO05D001716 5.0e-13 80.1 176 31.8
Manes.15G166000 Manihot esculenta HOM05D000855 ORTHO05D001716 1.1e-12 79.0 179 32.4
Peaxi162Scf00129g01229 Petunia axillaris HOM05D000855 ORTHO05D001716 1.1e-12 79.0 229 28.4
Potri.004G130600 Populus trichocarpa HOM05D000855 ORTHO05D001716 1.4e-12 78.6 183 33.3
Sabra04G0087000 Salix brachista HOM05D000855 ORTHO05D001716 4.2e-12 77.0 173 33.5
QL02p075970 Quercus lobata HOM05D000855 ORTHO05D001716 5.5e-12 76.6 174 31.0
Sopen02g031510 Solanum pennellii HOM05D000855 ORTHO05D001716 5.5e-12 76.6 153 32.7
Gohir.D04G055600 Gossypium hirsutum HOM05D000855 ORTHO05D001716 9.4e-12 75.9 150 33.3
Gorai.012G062400 Gossypium raimondii HOM05D000855 ORTHO05D001716 9.4e-12 75.9 150 33.3
Psat1g056360 Pisum sativum HOM05D000855 ORTHO05D001716 2.1e-11 74.7 110 43.6
BcaB07g30141 Brassica carinata HOM05D003530 ORTHO05D004017 3.6e-11 73.9 130 43.8
Hma1.2p1_0993F.1_g245380 Hydrangea macrophylla HOM05D000855 ORTHO05D001716 3.6e-11 73.9 160 31.9
Haze_14689 Corylus avellana HOM05D000855 ORTHO05D001716 4.6e-11 73.6 153 34.0
CSS0017800 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D001716 6.1e-11 73.2 288 26.4
Cpa.g.sc272.1 Carica papaya HOM05D000855 ORTHO05D001716 6.1e-11 73.2 296 26.0
Glyma.19G006600 Glycine max HOM05D000855 ORTHO05D001716 6.1e-11 73.2 186 26.3
Gohir.A05G358500 Gossypium hirsutum HOM05D000855 ORTHO05D001716 6.1e-11 73.2 151 32.5
PGSC0003DMG400000489 Solanum tuberosum HOM05D000855 ORTHO05D001716 7.9e-11 72.8 153 32.7
Cfa007413 Carpinus fangiana HOM05D000855 ORTHO05D001716 1.0e-10 72.4 208 30.3
Lj7C593G6 Lonicera japonica HOM05D000855 ORTHO05D001716 1.0e-10 72.4 143 32.9
BcaC07g40372 Brassica carinata HOM05D000059 ORTHO05D000528 1.8e-10 71.6 162 34.6
CSS0035274 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008469 1.8e-10 71.6 288 26.4
Duzib187G0729 Durio zibethinus HOM05D000855 ORTHO05D001716 3.9e-10 70.5 208 30.3
FAN02G1078 Fragaria x ananassa HOM05D000855 ORTHO05D001716 6.7e-10 69.7 108 39.8
Prupe.3G286500 Prunus persica HOM05D000855 ORTHO05D001716 6.7e-10 69.7 212 26.9
PGR083G1200 Punica granatum HOM05D000855 ORTHO05D001716 6.7e-10 69.7 177 29.4
TWI56G0295 Tripterygium wilfordii HOM05D000855 ORTHO05D001716 6.7e-10 69.7 143 39.2
arahy.Tifrunner.gnm1.ann1.ALQ29C Arachis hypogaea HOM05D000855 ORTHO05D001716 8.8e-10 69.3 175 30.9
C08p33060 Brassica napus HOM05D000059 ORTHO05D000528 8.8e-10 69.3 162 34.0
BolC5t31392H Brassica oleracea HOM05D023722 ORTHO05D016766 8.8e-10 69.3 39 79.5
BolC8t50906H Brassica oleracea HOM05D000059 ORTHO05D000528 8.8e-10 69.3 162 34.0
Ciclev10014124m.g Citrus clementina HOM05D000855 ORTHO05D001716 1.1e-09 68.9 164 33.5
Dinv33478 Davidia involucrata HOM05D000855 ORTHO05D001716 1.1e-09 68.9 134 34.3
arahy.Tifrunner.gnm1.ann1.S449H3 Arachis hypogaea HOM05D000855 ORTHO05D001716 1.5e-09 68.6 241 27.8
Duzib147G0205 Durio zibethinus HOM05D000855 ORTHO05D001716 1.5e-09 68.6 168 31.5
TWI12G0146 Tripterygium wilfordii HOM05D000855 ORTHO05D001716 2.0e-09 68.2 168 31.0
FAN09G2467 Fragaria x ananassa HOM05D000855 ORTHO05D001716 2.5e-09 67.8 108 38.9
Glyma.05G006200 Glycine max HOM05D000855 ORTHO05D001716 3.3e-09 67.4 158 29.7
FAN05G0881 Fragaria x ananassa HOM05D000855 ORTHO05D001716 4.3e-09 67.0 108 38.0
MD09G1031100 Malus domestica HOM05D000855 ORTHO05D001716 4.3e-09 67.0 164 29.3
RcHm_v2.0_Chr2g0172271 Rosa chinensis HOM05D000855 ORTHO05D001716 4.3e-09 67.0 82 43.9
A09p50390 Brassica napus HOM05D000059 ORTHO05D000528 5.7e-09 66.6 163 34.4
BraA09t40491Z Brassica rapa HOM05D000059 ORTHO05D000528 5.7e-09 66.6 163 34.4
FvH4_6g50890 Fragaria vesca HOM05D000855 ORTHO05D001716 7.4e-09 66.2 108 38.0
FAN14G0543 Fragaria x ananassa HOM05D000855 ORTHO05D001716 7.4e-09 66.2 108 38.0
COL.COLO4_29000 Corchorus olitorius HOM05D000855 ORTHO05D001716 1.3e-08 65.5 178 29.2
SHI22284 Sapria himalayana HOM05D000855 ORTHO05D001716 1.3e-08 65.5 262 27.1
arahy.Tifrunner.gnm1.ann1.XTK520 Arachis hypogaea HOM05D000855 ORTHO05D001716 1.7e-08 65.1 234 26.9
Rhsim08G0053500 Rhododendron simsii HOM05D000855 ORTHO05D001716 1.7e-08 65.1 276 26.8
Lalb_Chr17g0337301 Lupinus albus HOM05D000855 ORTHO05D001716 2.2e-08 64.7 165 30.3
Atru.chr6.2318 Acer truncatum HOM05D000855 ORTHO05D001716 3.7e-08 63.9 165 32.1
Phvul.008G155500 Phaseolus vulgaris HOM05D000855 ORTHO05D001716 3.7e-08 63.9 162 29.0
Ca_04183_v3 Cicer arietinum L. HOM05D000855 ORTHO05D001716 6.3e-08 63.2 175 31.4
Glyma.19G065400 Glycine max HOM05D000855 ORTHO05D001716 6.3e-08 63.2 167 29.3
VMungo1383G3683 Vigna mungo HOM05D000855 ORTHO05D001716 6.3e-08 63.2 168 28.0
Thecc.04G011500 Theobroma cacao HOM05D000855 ORTHO05D001716 8.2e-08 62.8 186 27.4
DCAR_004182 Daucus carota HOM05D000022 ORTHO05D000071 1.1e-07 62.4 140 33.6
Nn4g22754 Nelumbo nucifera HOM05D000855 ORTHO05D001716 1.4e-07 62.0 172 28.5
Cc07_g02060 Coffea canephora HOM05D000855 ORTHO05D001716 2.4e-07 61.2 176 26.7
Glyma.16G073200 Glycine max HOM05D000855 ORTHO05D001716 3.1e-07 60.8 168 31.0
A07p13300 Brassica napus HOM05D003373 ORTHO05D041218 4.1e-07 60.5 195 33.8
BraA07t29101Z Brassica rapa HOM05D003373 ORTHO05D041218 4.1e-07 60.5 195 33.8
Lj2g0009611 Lotus japonicus HOM05D000855 ORTHO05D001716 4.1e-07 60.5 175 28.0
Lalb_Chr06g0175941 Lupinus albus HOM05D000855 ORTHO05D001716 1.2e-06 58.9 225 28.4
VMungo0464G2112 Vigna mungo HOM05D000855 ORTHO05D001716 2.0e-06 58.2 159 31.4
vmacro18258 Vaccinium macrocarpon HOM05D000855 ORTHO05D001716 2.6e-06 57.8 182 28.6
Lj1g0022369 Lotus japonicus HOM05D000855 ORTHO05D001716 3.4e-06 57.4 204 27.5
GSVIVG01032455001 Vitis vinifera HOM05D000855 ORTHO05D001716 3.4e-06 57.4 146 29.5
Oeu004722.1 Olea europaea HOM05D000855 ORTHO05D001716 4.5e-06 57.0 219 27.4
Phvul.004G012100 Phaseolus vulgaris HOM05D000855 ORTHO05D001716 5.9e-06 56.6 142 31.7
CAN.G206.19 Capsicum annuum HOM05D000855 ORTHO05D001716 7.7e-06 56.2 213 23.9
PSO832G0050 Papaver somniferum HOM05D000855 ORTHO05D001716 7.7e-06 56.2 172 26.7


User provided reference genes

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