Gene: AT5G40340
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G40340
- Transcript Identifier AT5G40340.2
- Gene Type Coding gene
- Location Chr5 : 16131034-16134680 : negative
Gene Family Information
- ID HOM05D000855
- #Genes/#Species 698/99
- Phylogenetic origin
- ID ORTHO05D001716
- #Genes/#Species 365/94
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G40340.2
- uniprot Q9FNE4
Descriptions
- Description Tudor/PWWP/MBT superfamily protein
- Computational description Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT3G27860.1); Has 216308 Blast hits to 97367 proteins in 3295 species: Archae - 846; Bacteria - 24234; Metazoa - 92634; Fungi - 23658; Plants - 11662; Viruses - 1573; Other Eukaryotes - 61701 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IMP | Gene Ontology | regulation of transcription, DNA-templated | 1 |
| GO:0098532 | IMP, IGI | Gene Ontology | histone H3-K27 trimethylation | 1 |
| GO:2000028 | IMP | Gene Ontology | regulation of photoperiodism, flowering | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005730 | IDA | GOA Database | nucleolus | |
| GO:0005730 | HDA | Gene Ontology | nucleolus | 3 |
| GO:0009506 | IDA | GOA Database | plasmodesma | |
| GO:0009506 | HDA | Gene Ontology | plasmodesma | 4 |
| GO:0035098 | IDA | Gene Ontology | ESC/E(Z) complex | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000313 | PWWP domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |