Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 1.1e-173 613.2 316 100.0
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 7.9e-172 607.1 316 99.1
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 7.9e-172 607.1 316 99.1
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 1.8e-171 605.9 316 98.7
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 3.9e-171 604.7 316 98.4
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 3.7e-169 598.2 316 96.8
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 2.2e-166 589.0 316 94.9
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 1.5e-159 566.2 299 95.3
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 3.4e-159 565.1 299 95.0
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 4.5e-159 564.7 299 94.6
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 4.5e-159 564.7 299 94.6
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 1.3e-158 563.1 316 91.1
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 7.9e-156 553.9 316 89.9
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 2.6e-151 538.9 316 87.7
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 1.2e-148 530.0 301 87.0
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 2.0e-146 522.7 314 84.7
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 1.7e-145 519.6 315 84.4
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 1.6e-140 503.1 316 81.3
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 4.7e-140 501.5 316 79.1
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 5.5e-133 478.0 314 73.6
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 6.1e-132 474.6 313 75.4
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 8.8e-131 470.7 316 73.1
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 8.8e-131 470.7 316 73.4
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 2.0e-130 469.5 316 73.4
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 3.4e-130 468.8 316 72.8
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 1.7e-129 466.5 310 73.2
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 2.8e-129 465.7 316 72.8
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 2.4e-128 462.6 314 72.0
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 3.1e-128 462.2 313 71.6
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 4.1e-128 461.8 316 71.5
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 9.1e-128 460.7 313 72.5
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 9.1e-128 460.7 314 70.7
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 1.2e-127 460.3 316 71.8
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 4.5e-127 458.4 313 71.9
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 1.0e-126 457.2 316 71.2
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 1.3e-126 456.8 311 72.3
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 2.3e-126 456.1 316 70.6
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 2.9e-126 455.7 316 70.6
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 2.9e-126 455.7 316 70.3
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 3.8e-126 455.3 315 72.7
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 8.6e-126 454.1 299 72.9
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 1.1e-125 453.8 313 71.2
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 1.1e-125 453.8 313 70.6
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 5.5e-125 451.4 312 71.2
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 9.5e-125 450.7 314 69.4
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 1.2e-124 450.3 315 71.7
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 1.2e-124 450.3 315 67.0
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 1.2e-124 450.3 314 70.4
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 2.1e-124 449.5 316 69.6
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 2.8e-124 449.1 310 71.3
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 6.1e-124 448.0 314 69.4
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 6.1e-124 448.0 257 84.8
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 8.0e-124 447.6 315 69.8
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 1.8e-123 446.4 314 68.8
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 4.4e-122 441.8 314 68.5
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 5.7e-122 441.4 312 68.9
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 9.8e-122 440.7 316 69.6
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 9.8e-122 440.7 317 68.8
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 1.3e-121 440.3 314 66.9
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 1.7e-121 439.9 314 69.1
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.7e-121 439.9 315 67.6
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.7e-121 439.9 316 68.4
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 2.8e-121 439.1 315 67.3
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 2.8e-121 439.1 341 64.2
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 2.8e-121 439.1 312 70.2
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 3.7e-121 438.7 315 69.8
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 1.1e-120 437.2 316 67.4
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 1.1e-120 437.2 316 68.0
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 1.1e-120 437.2 310 68.7
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 1.4e-120 436.8 310 67.1
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 1.4e-120 436.8 312 68.3
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 2.4e-120 436.0 312 67.9
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 2.4e-120 436.0 310 68.7
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 4.1e-120 435.3 293 71.7
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 5.4e-120 434.9 315 67.6
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 7.0e-120 434.5 309 69.3
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 9.2e-120 434.1 314 67.8
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 9.2e-120 434.1 310 68.4
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 1.6e-119 433.3 312 68.9
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 2.7e-119 432.6 309 69.3
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 5.9e-119 431.4 315 67.3
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 7.8e-119 431.0 316 66.8
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 1.0e-118 430.6 317 68.1
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 5.0e-118 428.3 316 67.1
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 1.1e-117 427.2 313 66.5
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 3.3e-117 425.6 315 67.6
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 5.6e-117 424.9 315 67.0
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 9.5e-117 424.1 305 69.5
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 2.8e-116 422.5 314 66.6
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 3.6e-116 422.2 325 65.2
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.6e-116 422.2 325 65.2
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.6e-116 422.2 325 65.2
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 6.1e-116 421.4 313 67.1
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 1.4e-115 420.2 325 64.9
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 2.3e-115 419.5 312 65.4
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 6.8e-115 417.9 314 66.6
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 8.9e-115 417.5 310 65.8
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.4e-114 415.6 325 64.0
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 3.4e-114 415.6 294 68.4
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 7.5e-114 414.5 335 63.3
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 9.8e-114 414.1 292 68.8
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 9.8e-114 414.1 341 60.4
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 1.3e-113 413.7 306 66.7
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 2.9e-113 412.5 313 64.5
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 3.7e-113 412.1 285 70.9
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 4.9e-113 411.8 268 73.1
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 1.4e-112 410.2 316 63.9
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 4.1e-112 408.7 312 65.7
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 1.2e-111 407.1 309 65.7
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 2.0e-111 406.4 291 66.7
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 3.5e-111 405.6 316 64.2
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 1.0e-110 404.1 309 65.4
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 6.2e-108 394.8 317 65.0
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 1.1e-107 394.0 294 66.0
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 2.3e-107 392.9 317 65.0
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 5.2e-107 391.7 314 62.4
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 9.8e-106 387.5 326 63.8
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.9e-104 383.3 253 71.1
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 2.8e-92 342.8 323 55.7
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 7.6e-90 334.7 299 57.2
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 1.4e-88 330.5 230 68.7
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 1.9e-88 330.1 298 56.0
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 2.4e-88 329.7 319 53.3
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 4.6e-87 325.5 314 53.8
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 3.6e-84 315.8 223 68.2
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 5.3e-83 312.0 307 52.8
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 9.0e-83 311.2 228 66.7
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 1.3e-81 307.4 310 53.2
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 1.4e-75 287.3 276 54.0
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 6.4e-73 278.5 293 52.2
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 7.9e-71 271.6 304 47.7
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 1.8e-62 243.8 295 45.8
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 2.6e-58 229.9 214 54.7
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 4.6e-47 192.6 300 39.7
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 5.9e-42 175.6 174 56.9
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 3.3e-37 159.8 104 72.1
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 3.6e-31 139.8 93 72.0
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 4.0e-30 136.3 94 70.2
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 9.1e-27 125.2 90 75.6
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 9.1e-27 125.2 90 75.6
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 1.7e-25 120.9 90 66.7
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 4.0e-22 109.8 79 68.4
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 2.8e-20 103.6 90 64.4
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 9.4e-16 88.6 116 45.7
C06p07140 Brassica napus HOM05D005183 ORTHO05D100002 3.6e-07 60.1 33 90.9
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 8.9e-06 55.5 99 39.4


User provided reference genes

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