Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p11280 Brassica napus HOM05D007853 ORTHO05D009873 9.1e-220 766.5 371 100.0
BcaC06g35750 Brassica carinata HOM05D007853 ORTHO05D009873 1.8e-215 752.3 370 98.1
BolC7t41605H Brassica oleracea HOM05D007853 ORTHO05D009873 1.8e-215 752.3 370 98.1
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 1.7e-205 719.2 372 93.8
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 1.7e-205 719.2 372 93.8
BcaB06g26693 Brassica carinata HOM05D007853 ORTHO05D009873 2.3e-199 698.7 372 90.3
Sp3g22500 Schrenkiella parvula HOM05D007853 ORTHO05D009873 2.1e-179 632.5 375 82.1
Thhalv10002571m.g Eutrema salsugineum HOM05D007853 ORTHO05D009873 4.0e-175 618.2 375 81.6
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 3.9e-154 548.5 384 74.5
AT3G24760 Arabidopsis thaliana HOM05D007853 ORTHO05D009873 3.3e-153 545.4 382 74.3
Aa31LG8G11920 Aethionema arabicum HOM05D007853 ORTHO05D009873 5.7e-153 544.7 382 71.5
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 4.8e-152 541.6 385 73.2
THA.LOC104804604 Tarenaya hassleriana HOM05D007853 ORTHO05D009873 1.4e-151 540.0 380 71.6
CARHR101120 Cardamine hirsuta HOM05D007853 ORTHO05D009873 2.2e-149 532.7 380 71.1
Thecc.01G228200 Theobroma cacao HOM05D007853 ORTHO05D009873 5.7e-129 464.9 380 59.2
Duzib133G0551 Durio zibethinus HOM05D007853 ORTHO05D009873 1.6e-126 456.8 380 59.5
Manes.12G041900 Manihot esculenta HOM05D007853 ORTHO05D009873 2.3e-122 443.0 372 60.5
Gohir.D11G142600 Gossypium hirsutum HOM05D007853 ORTHO05D009873 2.6e-121 439.5 377 57.6
Gorai.007G152900 Gossypium raimondii HOM05D007853 ORTHO05D009873 2.6e-121 439.5 377 57.6
Gohir.A11G136300 Gossypium hirsutum HOM05D007853 ORTHO05D009873 7.5e-121 438.0 378 57.7
Prupe.8G204900 Prunus persica HOM05D007853 ORTHO05D009873 6.3e-120 434.9 371 59.6
FAN24G3434 Fragaria x ananassa HOM05D007853 ORTHO05D009873 7.0e-119 431.4 382 57.3
RcHm_v2.0_Chr6g0285141 Rosa chinensis HOM05D007853 ORTHO05D009873 7.0e-119 431.4 378 58.2
FvH4_2g19330 Fragaria vesca HOM05D007853 ORTHO05D009873 9.1e-119 431.0 384 57.3
CiPaw.04G106700 Carya illinoinensis HOM05D007853 ORTHO05D009873 1.6e-118 430.3 378 56.6
FAN15G1839 Fragaria x ananassa HOM05D007853 ORTHO05D009873 1.0e-117 427.6 382 56.8
FAN27G0897 Fragaria x ananassa HOM05D007853 ORTHO05D009873 8.5e-117 424.5 384 56.8
Ciclev10020523m.g Citrus clementina HOM05D007853 ORTHO05D009873 5.2e-114 415.2 397 55.9
MD05G1178400 Malus domestica HOM05D007853 ORTHO05D009873 1.5e-113 413.7 383 56.4
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 1.8e-111 406.8 381 55.1
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 9.1e-111 404.4 378 54.8
QL09p044713 Quercus lobata HOM05D007853 ORTHO05D009873 1.6e-110 403.7 376 54.5
PGR044G1509 Punica granatum HOM05D007853 ORTHO05D009873 1.3e-109 400.6 391 54.0
vmacro14766 Vaccinium macrocarpon HOM05D007853 ORTHO05D009873 1.3e-109 400.6 380 54.7
TAR636G2687 Trochodendron aralioides HOM05D007853 ORTHO05D009873 4.2e-108 395.6 373 53.1
TWI18G0437 Tripterygium wilfordii HOM05D007853 ORTHO05D009873 5.5e-108 395.2 364 56.0
Lalb_Chr03g0041891 Lupinus albus HOM05D007853 ORTHO05D009873 1.6e-107 393.7 375 52.5
Dinv04666 Davidia involucrata HOM05D007853 ORTHO05D009873 2.7e-107 392.9 377 52.3
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 6.1e-107 391.7 381 52.2
Lj1g0009384 Lotus japonicus HOM05D007853 ORTHO05D009873 5.2e-106 388.7 384 52.3
ClCG09G009130 Citrullus lanatus HOM05D007853 ORTHO05D009873 2.6e-105 386.3 366 55.2
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 7.5e-105 384.8 372 52.2
Phvul.008G123400 Phaseolus vulgaris HOM05D007853 ORTHO05D009873 2.8e-104 382.9 375 52.0
VMungo1383G0232 Vigna mungo HOM05D007853 ORTHO05D009873 2.8e-104 382.9 375 52.3
CSS0040524 Camellia sinensis var. sinensis HOM05D007853 ORTHO05D009873 4.9e-104 382.1 371 52.3
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 1.1e-103 380.9 374 53.5
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 1.1e-103 380.9 374 53.5
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 1.8e-103 380.2 376 53.5
Lsat_1_v5_gn_5_179800 Lactuca sativa HOM05D007853 ORTHO05D009873 5.4e-103 378.6 396 49.5
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 9.2e-103 377.9 377 53.8
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 7.7e-102 374.8 380 52.1
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 1.3e-101 374.0 371 52.8
HanXRQChr01g0014671 Helianthus annuus HOM05D007853 ORTHO05D009873 1.7e-101 373.6 385 49.1
Lj1C83T5 Lonicera japonica HOM05D007853 ORTHO05D009873 1.7e-101 373.6 375 50.9
CDE01G0405 Ceratophyllum demersum HOM05D007853 ORTHO05D009873 9.5e-100 367.9 375 49.6
Hma1.2p1_1061F.1_g253350 Hydrangea macrophylla HOM05D007853 ORTHO05D009873 9.5e-100 367.9 370 52.7
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 1.2e-99 367.5 379 51.5
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 1.6e-99 367.1 367 51.2
Sopen06g034930 Solanum pennellii HOM05D007853 ORTHO05D009873 5.2e-98 362.1 367 50.1
Solyc06g083550.1 Solanum lycopersicum HOM05D007853 ORTHO05D009873 1.5e-97 360.5 367 50.4
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 4.4e-97 359.0 368 50.0
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 3.9e-93 345.9 379 47.8
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 1.1e-92 344.4 349 51.9
Oeu015462.1 Olea europaea HOM05D007853 ORTHO05D009873 7.5e-89 331.6 376 48.1
DCAR_000536 Daucus carota HOM05D007853 ORTHO05D009873 2.9e-88 329.7 369 48.2
GSVIVG01028563001 Vitis vinifera HOM05D007853 ORTHO05D009873 6.4e-88 328.6 342 53.8
SEGI_02257 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 9.2e-87 324.7 382 44.2
Haze_24777 Corylus avellana HOM05D007853 ORTHO05D009873 1.1e-76 291.2 284 52.8
Peaxi162Scf00517g00042 Petunia axillaris HOM05D007853 ORTHO05D009873 2.7e-70 270.0 249 52.6
Nn3g19919 Nelumbo nucifera HOM05D007853 ORTHO05D009873 6.9e-58 228.8 315 45.1
Nitab4.5_0006773g0030 Nicotiana tabacum HOM05D007853 ORTHO05D009873 8.1e-51 205.3 267 39.7
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 3.0e-45 186.8 380 32.9
Atru.chr5.2009 Acer truncatum HOM05D007853 ORTHO05D009873 6.5e-40 169.1 127 57.5
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.9e-39 167.5 383 31.1
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 4.3e-28 129.8 366 28.4
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 9.7e-28 128.6 361 28.0
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 2.2e-27 127.5 380 30.5
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 8.2e-27 125.6 387 26.4
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.4e-26 124.8 364 27.7
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.0e-25 120.9 363 27.8
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 2.0e-25 120.9 364 28.6
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 3.4e-25 120.2 378 26.5
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 5.9e-25 119.4 375 28.3
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 1.3e-24 118.2 389 29.0
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 1.7e-24 117.9 361 28.8
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 2.9e-24 117.1 366 26.8
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 5.0e-24 116.3 379 27.7
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 1.4e-23 114.8 380 29.2
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 2.5e-23 114.0 371 28.0
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 2.5e-23 114.0 373 26.3
Lalb_Chr00c01g0403781 Lupinus albus HOM05D007853 ORTHO05D009873 2.5e-23 114.0 121 50.4
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 5.5e-23 112.8 352 27.0
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 9.4e-23 112.1 361 28.5
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 9.4e-23 112.1 373 27.3
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.6e-22 111.3 340 29.1
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 2.1e-22 110.9 375 25.9
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 2.1e-22 110.9 370 29.2
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 4.6e-22 109.8 341 29.9
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 6.1e-22 109.4 378 28.3
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 1.8e-21 107.8 339 27.7
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 1.8e-21 107.8 359 27.6
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 2.3e-21 107.5 339 26.5
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 2.3e-21 107.5 339 26.5
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 2.3e-21 107.5 348 27.0
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 2.3e-21 107.5 359 28.4
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 3.0e-21 107.1 378 28.0
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 3.0e-21 107.1 378 28.0
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 5.1e-21 106.3 362 24.9
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.7e-21 105.9 372 25.0
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 8.8e-21 105.5 361 25.2
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 1.1e-20 105.1 361 25.5
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.5e-20 104.8 372 24.7
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 1.5e-20 104.8 385 24.9
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 1.5e-20 104.8 333 28.2
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 2.0e-20 104.4 350 29.4
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 2.0e-20 104.4 362 26.2
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 3.3e-20 103.6 380 27.4
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 4.4e-20 103.2 361 27.7
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 5.7e-20 102.8 366 26.8
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 7.4e-20 102.4 366 25.4
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 7.4e-20 102.4 365 26.0
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 1.7e-19 101.3 338 25.4
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 2.2e-19 100.9 364 26.1
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 6.3e-19 99.4 365 27.1
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 1.8e-18 97.8 362 26.2
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 2.4e-18 97.4 343 27.4
SMO116G0409 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 9.1e-18 95.5 339 23.6
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.5e-17 94.7 362 25.7
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 2.0e-17 94.4 340 26.2
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 2.6e-17 94.0 371 27.0
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.4e-17 93.6 371 26.1
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 3.4e-17 93.6 359 26.7
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.3e-16 91.7 374 26.5
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 1.3e-16 91.7 365 27.9
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.5e-16 89.4 318 24.5
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 4.2e-15 86.7 371 25.6
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 9.4e-15 85.5 337 25.5
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 9.4e-15 85.5 365 26.6
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.2e-14 85.1 340 26.2
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 3.6e-14 83.6 361 24.9
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 7.9e-14 82.4 71 50.7
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 2.3e-13 80.9 385 24.9
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 8.8e-13 79.0 187 27.3
Mapoly0115s0063 Marchantia polymorpha HOM05D007853 ORTHO05D009873 8.8e-13 79.0 293 27.0
Mapoly0137s0025 Marchantia polymorpha HOM05D004302 ORTHO05D004939 8.8e-13 79.0 319 26.3
Pp3c10_6350 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.0e-12 77.8 243 28.4
Rhsim01G0257600 Rhododendron simsii HOM05D007853 ORTHO05D009873 3.3e-12 77.0 91 47.3
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 7.4e-12 75.9 324 25.0
Mapoly0168s0028 Marchantia polymorpha HOM05D003005 ORTHO05D007546 7.4e-12 75.9 292 25.3
AagrBONN_evm.TU.Sc2ySwM_228.2355 Anthoceros agrestis HOM05D002809 ORTHO05D007546 9.7e-12 75.5 310 24.5
Mapoly0098s0011 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.3e-11 75.1 311 28.3
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 4.8e-11 73.2 208 28.8
Ca_06955_v3 Cicer arietinum L. HOM05D004302 ORTHO05D004939 6.3e-11 72.8 318 27.0
HanXRQChr07g0200041 Helianthus annuus HOM05D004302 ORTHO05D004939 7.0e-10 69.3 315 24.4
CSS0006122 Camellia sinensis var. sinensis HOM05D004302 ORTHO05D004939 9.1e-10 68.9 315 25.4
HanXRQChr05g0128691 Helianthus annuus HOM05D002809 ORTHO05D004563 9.1e-10 68.9 282 20.9
Pp3c1_27000 Physcomitrium patens HOM05D002809 ORTHO05D004563 1.6e-09 68.2 315 22.2
Mapoly0170s0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.2e-08 64.3 343 25.9
AagrBONN_evm.TU.Sc2ySwM_344.2438 Anthoceros agrestis HOM05D002809 ORTHO05D004939 6.5e-08 62.8 303 24.4
Cc08_g07830 Coffea canephora HOM05D006415 ORTHO05D008549 1.5e-07 61.6 211 28.9
Cpa.g.sc82.23 Carica papaya HOM05D006415 ORTHO05D008549 1.9e-07 61.2 390 23.1
Lsat_1_v5_gn_3_30801 Lactuca sativa HOM05D002809 ORTHO05D004563 2.5e-07 60.8 316 21.5
Lj7A371T45 Lonicera japonica HOM05D006114 ORTHO05D007609 3.2e-07 60.5 378 26.5
SMO361G0323 Selaginella moellendorffii HOM05D002809 ORTHO05D004939 9.4e-07 58.9 313 23.6
Thhalv10016113m.g Eutrema salsugineum HOM05D007853 ORTHO05D009873 1.6e-06 58.2 37 83.8
AagrBONN_evm.TU.Sc2ySwM_362.2328 Anthoceros agrestis HOM05D004302 ORTHO05D009385 2.1e-06 57.8 179 26.8
SEGI_02380 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 2.1e-06 57.8 42 61.9
MSTRG.8011 Avicennia marina HOM05D002809 ORTHO05D004563 3.6e-06 57.0 281 21.7
Ca_13084_v3 Cicer arietinum L. HOM05D006415 ORTHO05D008549 6.1e-06 56.2 367 23.2


User provided reference genes

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