Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 2.1e-180 635.6 325 100.0
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 8.1e-180 633.6 325 99.7
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 7.6e-178 627.1 325 99.4
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 4.2e-176 621.3 325 97.8
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 4.2e-176 621.3 325 97.8
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 1.5e-154 549.7 303 92.4
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 2.2e-153 545.8 303 92.1
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 2.2e-153 545.8 303 92.1
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 1.9e-152 542.7 303 92.1
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 5.5e-152 541.2 303 91.7
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 7.2e-152 540.8 303 91.7
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 3.3e-149 531.9 302 90.7
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 4.2e-144 515.0 306 86.6
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 8.8e-142 507.3 306 85.3
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 2.5e-141 505.8 303 87.5
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 3.3e-141 505.4 307 84.4
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 1.7e-140 503.1 307 84.4
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 2.1e-135 486.1 310 85.5
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 1.6e-127 459.9 294 81.6
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 1.3e-116 423.7 308 71.8
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 4.4e-109 398.7 311 69.1
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 2.8e-108 396.0 305 71.5
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 6.6e-105 384.8 299 69.6
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 8.6e-105 384.4 306 68.0
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 1.5e-104 383.6 311 66.6
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 5.6e-104 381.7 287 69.7
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 1.2e-103 380.6 309 67.0
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 2.8e-103 379.4 302 68.5
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 1.0e-102 377.5 250 76.0
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 1.4e-102 377.1 250 76.0
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 1.8e-102 376.7 300 68.3
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 2.3e-102 376.3 308 66.9
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 2.3e-102 376.3 304 65.8
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 2.3e-102 376.3 308 65.6
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 3.0e-102 375.9 302 67.5
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 8.9e-102 374.4 304 65.5
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 1.2e-101 374.0 303 66.7
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 1.2e-101 374.0 281 69.8
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 1.2e-101 374.0 308 66.9
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 1.2e-101 374.0 304 65.5
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 1.5e-101 373.6 246 76.4
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 2.0e-101 373.2 299 65.6
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 2.0e-101 373.2 308 66.2
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 2.6e-101 372.9 311 64.6
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 3.4e-101 372.5 302 65.9
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 3.4e-101 372.5 303 67.3
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 5.7e-101 371.7 240 76.2
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 5.7e-101 371.7 310 65.2
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 7.5e-101 371.3 254 73.6
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 1.3e-100 370.5 302 66.2
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 2.9e-100 369.4 250 74.0
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 2.9e-100 369.4 270 72.2
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 3.7e-100 369.0 306 67.0
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 3.7e-100 369.0 310 64.5
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 6.4e-100 368.2 252 74.6
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.4e-99 367.1 332 63.3
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 1.4e-99 367.1 303 65.0
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 1.8e-99 366.7 303 65.0
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 2.4e-99 366.3 302 67.2
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 2.4e-99 366.3 308 65.6
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 3.2e-99 365.9 316 63.9
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 4.1e-99 365.5 297 66.3
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 5.4e-99 365.2 241 76.3
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 7.0e-99 364.8 305 64.9
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 1.2e-98 364.0 276 69.9
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 3.5e-98 362.5 289 67.1
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 5.9e-98 361.7 286 67.5
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 7.8e-98 361.3 298 65.8
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 1.0e-97 360.9 243 75.3
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 1.3e-97 360.5 302 64.6
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 1.1e-96 357.5 241 74.7
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 1.5e-96 357.1 306 64.1
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 1.5e-96 357.1 246 73.6
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 1.5e-96 357.1 306 62.4
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 1.9e-96 356.7 322 60.2
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 7.3e-96 354.8 305 63.6
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 9.5e-96 354.4 247 72.1
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 2.8e-95 352.8 246 72.8
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 2.3e-94 349.7 246 72.4
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 2.3e-94 349.7 302 62.6
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 5.2e-94 348.6 266 68.8
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 6.8e-94 348.2 314 61.5
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 6.8e-94 348.2 272 66.9
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 1.2e-93 347.4 248 69.8
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 2.6e-93 346.3 250 70.4
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 3.7e-92 342.4 249 69.5
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 6.4e-92 341.7 250 70.0
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 1.9e-91 340.1 266 64.7
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 9.2e-91 337.8 224 76.3
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 2.3e-89 333.2 241 71.4
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 1.2e-87 327.4 214 76.6
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 1.2e-87 327.4 317 60.9
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 4.7e-87 325.5 243 68.7
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 8.1e-87 324.7 260 62.3
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 1.4e-86 323.9 229 72.5
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 6.8e-86 321.6 220 75.0
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 2.3e-81 306.6 256 62.1
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 6.6e-81 305.1 249 67.1
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 1.8e-78 297.0 247 62.3
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 2.3e-78 296.6 253 67.2
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 8.9e-78 294.7 315 56.8
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 1.2e-77 294.3 253 66.4
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 2.6e-77 293.1 240 65.8
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 2.6e-77 293.1 252 65.9
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 1.9e-75 287.0 214 69.6
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 6.0e-74 282.0 245 65.7
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 1.8e-70 270.4 241 59.3
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 3.8e-68 262.7 221 64.7
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 5.4e-67 258.8 183 73.8
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 4.8e-63 245.7 315 49.2
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 4.5e-61 239.2 180 70.0
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 8.4e-60 235.0 245 54.3
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 2.8e-55 219.9 293 45.4
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 4.0e-46 189.5 130 74.6
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 4.6e-42 176.0 115 72.2
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 2.2e-36 157.1 116 65.5
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 4.1e-30 136.3 113 62.8
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 7.7e-29 132.1 95 64.2
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 1.2e-26 124.8 82 73.2
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 2.4e-22 110.5 64 92.2
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 1.2e-21 108.2 85 62.4
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 3.4e-21 106.7 76 69.7
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 6.1e-10 69.3 48 68.8
RcHm_v2.0_Chr5g0065021 Rosa chinensis HOM05D006330 ORTHO05D008013 4.1e-06 56.6 46 60.9


User provided reference genes

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