Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p10270 Brassica napus HOM05D003366 ORTHO05D027103 1.2e-53 213.0 111 100.0
BcaC06g35870 Brassica carinata HOM05D003366 ORTHO05D027103 1.8e-38 162.5 99 88.9
BcaB08g34466 Brassica carinata HOM05D003366 ORTHO05D004045 2.4e-38 162.2 107 82.2
BolC7t41475H Brassica oleracea HOM05D003366 ORTHO05D027103 2.0e-37 159.1 91 94.5
BcaC01g03208 Brassica carinata HOM05D003366 ORTHO05D004045 3.3e-32 141.7 104 76.0
C03p54710 Brassica napus HOM05D003366 ORTHO05D004045 7.4e-32 140.6 104 75.0
AT2G04400 Arabidopsis thaliana HOM05D003366 ORTHO05D004045 1.3e-31 139.8 112 69.6
AL3G42040 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 1.6e-31 139.4 112 68.8
A03p44300 Brassica napus HOM05D003366 ORTHO05D004045 1.6e-31 139.4 104 74.0
BolC3t17760H Brassica oleracea HOM05D003366 ORTHO05D004045 3.7e-31 138.3 104 74.0
BraA03t13559Z Brassica rapa HOM05D003366 ORTHO05D004045 2.4e-30 135.6 107 71.0
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 3.1e-30 135.2 107 68.2
Sp3g23210 Schrenkiella parvula HOM05D003366 ORTHO05D004045 4.0e-30 134.8 104 74.0
BcaC01g03322 Brassica carinata HOM05D003366 ORTHO05D031881 1.5e-29 132.9 99 72.7
BcaC08g43008 Brassica carinata HOM05D003366 ORTHO05D004045 1.5e-29 132.9 107 67.3
C06p02570 Brassica napus HOM05D003366 ORTHO05D004045 1.5e-29 132.9 107 67.3
Carub.0003s2605 Capsella rubella HOM05D003366 ORTHO05D004045 2.0e-29 132.5 115 68.7
BolC6t35385H Brassica oleracea HOM05D003366 ORTHO05D004045 3.4e-29 131.7 111 64.9
Thhalv10002557m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 2.2e-28 129.0 103 73.8
Aa31sc202G30 Aethionema arabicum HOM05D003366 ORTHO05D004045 2.4e-22 109.0 101 59.4
BcaB06g26784 Brassica carinata HOM05D003366 ORTHO05D004045 1.1e-19 100.1 79 75.9
CARHR102260 Cardamine hirsuta HOM05D003366 ORTHO05D004045 7.1e-19 97.4 85 65.9
THA.LOC104808841 Tarenaya hassleriana HOM05D003366 ORTHO05D004045 3.9e-17 91.7 105 54.3
CiPaw.03G282800 Carya illinoinensis HOM05D003366 ORTHO05D004045 7.6e-13 77.4 97 48.5
QL04p067730 Quercus lobata HOM05D003366 ORTHO05D004045 7.2e-11 70.9 99 45.5
Cpa.g.sc136.37 Carica papaya HOM05D003366 ORTHO05D004045 9.4e-11 70.5 108 41.7
Eucgr.A01368 Eucalyptus grandis HOM05D003366 ORTHO05D004045 2.1e-10 69.3 96 45.8
C03p53670 Brassica napus HOM05D003366 ORTHO05D031881 6.1e-10 67.8 61 60.7
BolC3t17627H Brassica oleracea HOM05D003366 ORTHO05D031881 6.1e-10 67.8 61 60.7
Sed0016337 Sechium edule HOM05D003366 ORTHO05D004045 1.4e-09 66.6 82 45.1
Lalb_Chr04g0250271 Lupinus albus HOM05D003366 ORTHO05D004045 1.8e-09 66.2 62 54.8
Glyma.14G053300 Glycine max HOM05D003366 ORTHO05D004045 3.0e-09 65.5 63 57.1
COL.COLO4_19639 Corchorus olitorius HOM05D003366 ORTHO05D004045 5.1e-09 64.7 92 46.7
Glyma.02G259000 Glycine max HOM05D003366 ORTHO05D004045 8.8e-09 63.9 65 55.4
PSO541G3149 Papaver somniferum HOM05D003366 ORTHO05D004045 8.8e-09 63.9 93 41.9
FvH4_6g40500 Fragaria vesca HOM05D003366 ORTHO05D004045 1.1e-08 63.5 107 36.4
FAN10G3881 Fragaria x ananassa HOM05D003366 ORTHO05D004045 1.1e-08 63.5 107 36.4
FAN14G5851 Fragaria x ananassa HOM05D003366 ORTHO05D004045 1.1e-08 63.5 107 36.4
FAN02G0729 Fragaria x ananassa HOM05D003366 ORTHO05D004045 1.5e-08 63.2 79 44.3
VMungo0647G1799 Vigna mungo HOM05D003366 ORTHO05D004045 1.5e-08 63.2 65 53.8
FAN05G5269 Fragaria x ananassa HOM05D003366 ORTHO05D004045 1.9e-08 62.8 99 38.4
arahy.Tifrunner.gnm1.ann1.65EY62 Arachis hypogaea HOM05D003366 ORTHO05D004045 3.3e-08 62.0 64 51.6
Ciclev10015498m.g Citrus clementina HOM05D003366 ORTHO05D004045 4.3e-08 61.6 111 40.5
Lalb_Chr10g0105441 Lupinus albus HOM05D003366 ORTHO05D004045 4.3e-08 61.6 72 47.2
ClCG02G002960 Citrullus lanatus HOM05D003366 ORTHO05D004045 5.7e-08 61.2 84 48.8
arahy.Tifrunner.gnm1.ann1.8VJ98X Arachis hypogaea HOM05D003366 ORTHO05D004045 7.4e-08 60.8 64 50.0
arahy.Tifrunner.gnm1.ann1.SQZ1L0 Arachis hypogaea HOM05D003366 ORTHO05D004045 7.4e-08 60.8 64 50.0
MELO3C024189.2 Cucumis melo HOM05D003366 ORTHO05D004045 7.4e-08 60.8 71 49.3
CsaV3_7G002440 Cucumis sativus L. HOM05D003366 ORTHO05D004045 7.4e-08 60.8 86 41.9
MD09G1129300 Malus domestica HOM05D003366 ORTHO05D004045 7.4e-08 60.8 87 39.1
RcHm_v2.0_Chr2g0155751 Rosa chinensis HOM05D003366 ORTHO05D004045 7.4e-08 60.8 80 45.0
arahy.Tifrunner.gnm1.ann1.0B41PU Arachis hypogaea HOM05D003366 ORTHO05D004045 9.7e-08 60.5 73 46.6
Ca_06031_v3 Cicer arietinum L. HOM05D003366 ORTHO05D004045 9.7e-08 60.5 63 49.2
Psat2g028840 Pisum sativum HOM05D003366 ORTHO05D004045 9.7e-08 60.5 57 49.1
Sp2g18590 Schrenkiella parvula HOM05D003366 ORTHO05D004045 9.7e-08 60.5 112 41.1
Duzib138G0143 Durio zibethinus HOM05D003366 ORTHO05D004045 1.3e-07 60.1 64 50.0
Gohir.A11G148200 Gossypium hirsutum HOM05D003366 ORTHO05D004045 1.3e-07 60.1 58 51.7
Thecc.01G197700 Theobroma cacao HOM05D003366 ORTHO05D004045 1.3e-07 60.1 61 47.5
Atru.chr6.3414 Acer truncatum HOM05D003366 ORTHO05D004045 1.7e-07 59.7 84 42.9
Cc04_g11110 Coffea canephora HOM05D003366 ORTHO05D004045 2.2e-07 59.3 58 50.0
Gorai.007G165300 Gossypium raimondii HOM05D003366 ORTHO05D004045 2.2e-07 59.3 58 51.7
Nitab4.5_0000510g0170 Nicotiana tabacum HOM05D003366 ORTHO05D004045 2.2e-07 59.3 76 43.4
PGR031G3285 Punica granatum HOM05D003366 ORTHO05D004045 2.2e-07 59.3 72 48.6
MD17G1118200 Malus domestica HOM05D003366 ORTHO05D004045 2.8e-07 58.9 91 47.3
PSO675G3120 Papaver somniferum HOM05D003366 ORTHO05D004045 2.8e-07 58.9 92 37.0
CSS0040673 Camellia sinensis var. sinensis HOM05D003366 ORTHO05D004045 3.7e-07 58.5 74 48.6
Manes.12G063602 Manihot esculenta HOM05D003366 ORTHO05D004045 3.7e-07 58.5 99 40.4
Oeu045495.1 Olea europaea HOM05D003366 ORTHO05D004045 3.7e-07 58.5 83 43.4
Cfa014212 Carpinus fangiana HOM05D003366 ORTHO05D004045 4.8e-07 58.2 101 37.6
Gohir.D07G170900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 4.8e-07 58.2 109 39.4
Gorai.001G191000 Gossypium raimondii HOM05D003366 ORTHO05D004045 4.8e-07 58.2 109 39.4
Nitab4.5_0000774g0060 Nicotiana tabacum HOM05D003366 ORTHO05D004045 4.8e-07 58.2 75 41.3
TAR629G0562 Trochodendron aralioides HOM05D003366 ORTHO05D004045 4.8e-07 58.2 80 43.8
EL10Ac2g04609 Beta vulgaris HOM05D003366 ORTHO05D004045 6.3e-07 57.8 84 42.9
SGA_v2.0_scaffold7G04167 Striga asiatica HOM05D000527 ORTHO05D000559 6.3e-07 57.8 65 49.2
Gohir.A07G163900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 8.2e-07 57.4 53 50.9
Gohir.D11G155000 Gossypium hirsutum HOM05D003366 ORTHO05D004045 8.2e-07 57.4 61 45.9
Hma1.2p1_0629F.1_g192240 Hydrangea macrophylla HOM05D003366 ORTHO05D004045 8.2e-07 57.4 89 39.3
VMungo0647G0370 Vigna mungo HOM05D003366 ORTHO05D004045 8.2e-07 57.4 57 50.9
LjContig00357g0014369 Lotus japonicus HOM05D003366 ORTHO05D004045 1.1e-06 57.0 57 45.6
TAR626G1358 Trochodendron aralioides HOM05D003366 ORTHO05D004045 1.1e-06 57.0 87 46.0
Thhalv10004384m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 1.4e-06 56.6 86 43.0
Medtr5g084030 Medicago truncatula HOM05D003366 ORTHO05D004045 1.4e-06 56.6 57 45.6
GSVIVG01030116001 Vitis vinifera HOM05D003366 ORTHO05D004045 1.4e-06 56.6 70 45.7
AL8G20910 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 1.8e-06 56.2 84 41.7
AL8G20960 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 1.8e-06 56.2 84 41.7
Nitab4.5_0000025g0230 Nicotiana tabacum HOM05D003366 ORTHO05D004045 1.8e-06 56.2 75 40.0
Hund13735 Selenicereus undatus HOM05D003366 ORTHO05D004045 1.8e-06 56.2 112 33.0
Peaxi162Scf00089g01132 Petunia axillaris HOM05D003366 ORTHO05D004045 2.4e-06 55.8 58 50.0
TWI36G0699 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 2.4e-06 55.8 96 40.6
Prupe.3G196200 Prunus persica HOM05D003366 ORTHO05D004045 4.1e-06 55.1 38 63.2
Solyc03g111850.3 Solanum lycopersicum HOM05D003366 ORTHO05D004045 4.1e-06 55.1 63 42.9
Sopen03g030970 Solanum pennellii HOM05D003366 ORTHO05D004045 4.1e-06 55.1 63 42.9
Psat1g185040 Pisum sativum HOM05D003366 ORTHO05D004045 5.3e-06 54.7 63 41.3
Hund03398 Selenicereus undatus HOM05D003366 ORTHO05D004045 5.3e-06 54.7 81 40.7
Nitab4.5_0003542g0080 Nicotiana tabacum HOM05D003366 ORTHO05D004045 6.9e-06 54.3 76 38.2
PGSC0003DMG400015153 Solanum tuberosum HOM05D003366 ORTHO05D004045 6.9e-06 54.3 63 44.4
Thecc.10G171200 Theobroma cacao HOM05D003366 ORTHO05D004045 6.9e-06 54.3 40 57.5
Actinidia35201 Actinidia chinensis HOM05D003366 ORTHO05D004045 9.1e-06 53.9 72 45.8
Carub.0008s0779 Capsella rubella HOM05D003366 ORTHO05D004045 9.1e-06 53.9 85 40.0
Lj8A136T94 Lonicera japonica HOM05D003366 ORTHO05D004045 9.1e-06 53.9 57 47.4


User provided reference genes

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