Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p10260 Brassica napus HOM05D003366 ORTHO05D027103 2.6e-49 198.4 96 100.0
BolC7t41475H Brassica oleracea HOM05D003366 ORTHO05D027103 5.7e-41 170.6 87 96.6
BcaB08g34466 Brassica carinata HOM05D003366 ORTHO05D004045 9.2e-23 110.2 56 94.6
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 2.7e-22 108.6 57 87.7
BraA03t13559Z Brassica rapa HOM05D003366 ORTHO05D004045 2.7e-22 108.6 56 92.9
Sp3g23210 Schrenkiella parvula HOM05D003366 ORTHO05D004045 2.7e-22 108.6 56 92.9
BcaC01g03208 Brassica carinata HOM05D003366 ORTHO05D004045 1.3e-21 106.3 56 91.1
A03p44300 Brassica napus HOM05D003366 ORTHO05D004045 1.3e-21 106.3 56 91.1
C03p54710 Brassica napus HOM05D003366 ORTHO05D004045 1.3e-21 106.3 56 91.1
BolC3t17760H Brassica oleracea HOM05D003366 ORTHO05D004045 1.3e-21 106.3 56 91.1
BcaC08g43008 Brassica carinata HOM05D003366 ORTHO05D004045 1.5e-20 102.8 56 87.5
C06p02570 Brassica napus HOM05D003366 ORTHO05D004045 1.5e-20 102.8 56 87.5
CARHR102260 Cardamine hirsuta HOM05D003366 ORTHO05D004045 1.5e-20 102.8 56 87.5
AT2G04400 Arabidopsis thaliana HOM05D003366 ORTHO05D004045 1.9e-20 102.4 56 85.7
Thhalv10002557m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 1.9e-20 102.4 56 87.5
AL3G42040 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 5.6e-20 100.9 56 85.7
Carub.0003s2605 Capsella rubella HOM05D003366 ORTHO05D004045 7.3e-20 100.5 56 83.9
BcaB06g26784 Brassica carinata HOM05D003366 ORTHO05D004045 2.1e-19 99.0 56 85.7
BolC6t35385H Brassica oleracea HOM05D003366 ORTHO05D004045 2.1e-19 99.0 56 85.7
Aa31sc202G30 Aethionema arabicum HOM05D003366 ORTHO05D004045 4.7e-19 97.8 56 80.4
Duzib138G0143 Durio zibethinus HOM05D003366 ORTHO05D004045 8.1e-19 97.1 59 76.3
TWI75G1649 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 1.5e-17 92.8 55 78.2
Gohir.A07G163900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 2.0e-17 92.4 55 78.2
Sabra14G0128900 Salix brachista HOM05D003366 ORTHO05D004045 2.0e-17 92.4 55 80.0
TWI18G0380 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 3.4e-17 91.7 55 78.2
Potri.014G169100 Populus trichocarpa HOM05D003366 ORTHO05D004045 4.4e-17 91.3 55 78.2
THA.LOC104819033 Tarenaya hassleriana HOM05D003366 ORTHO05D004045 4.4e-17 91.3 55 78.2
arahy.Tifrunner.gnm1.ann1.SQZ1L0 Arachis hypogaea HOM05D003366 ORTHO05D004045 5.8e-17 90.9 55 76.4
COL.COLO4_19639 Corchorus olitorius HOM05D003366 ORTHO05D004045 5.8e-17 90.9 55 76.4
Gohir.D11G155000 Gossypium hirsutum HOM05D003366 ORTHO05D004045 5.8e-17 90.9 55 76.4
Gorai.001G191000 Gossypium raimondii HOM05D003366 ORTHO05D004045 5.8e-17 90.9 55 76.4
Gorai.007G165300 Gossypium raimondii HOM05D003366 ORTHO05D004045 5.8e-17 90.9 55 76.4
arahy.Tifrunner.gnm1.ann1.65EY62 Arachis hypogaea HOM05D003366 ORTHO05D004045 7.6e-17 90.5 55 76.4
VMungo0647G1799 Vigna mungo HOM05D003366 ORTHO05D004045 7.6e-17 90.5 55 76.4
MD17G1118200 Malus domestica HOM05D003366 ORTHO05D004045 9.9e-17 90.1 55 74.5
THA.LOC104808841 Tarenaya hassleriana HOM05D003366 ORTHO05D004045 9.9e-17 90.1 55 76.4
TWI36G0699 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 9.9e-17 90.1 55 74.5
BcaC06g30818 Brassica carinata HOM05D003366 ORTHO05D004045 1.3e-16 89.7 55 76.4
Gohir.D07G170900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 1.3e-16 89.7 55 74.5
arahy.Tifrunner.gnm1.ann1.8VJ98X Arachis hypogaea HOM05D003366 ORTHO05D004045 2.2e-16 89.0 55 74.5
MD09G1129300 Malus domestica HOM05D003366 ORTHO05D004045 2.2e-16 89.0 55 74.5
Sp2g18590 Schrenkiella parvula HOM05D003366 ORTHO05D004045 2.9e-16 88.6 55 74.5
Hund13735 Selenicereus undatus HOM05D003366 ORTHO05D004045 2.9e-16 88.6 56 69.6
Nn6g34363 Nelumbo nucifera HOM05D003366 ORTHO05D004045 4.9e-16 87.8 55 72.7
PSO541G3149 Papaver somniferum HOM05D003366 ORTHO05D004045 4.9e-16 87.8 55 74.5
Phvul.008G218200 Phaseolus vulgaris HOM05D003366 ORTHO05D004045 4.9e-16 87.8 55 74.5
Psat2g028840 Pisum sativum HOM05D003366 ORTHO05D004045 4.9e-16 87.8 55 76.4
Prupe.3G196200 Prunus persica HOM05D003366 ORTHO05D004045 4.9e-16 87.8 55 72.7
A06p39320 Brassica napus HOM05D003366 ORTHO05D004045 6.4e-16 87.4 55 74.5
C07p38950 Brassica napus HOM05D003366 ORTHO05D004045 6.4e-16 87.4 55 74.5
BolC7t44416H Brassica oleracea HOM05D003366 ORTHO05D004045 6.4e-16 87.4 55 74.5
CARHR184070 Cardamine hirsuta HOM05D003366 ORTHO05D004045 6.4e-16 87.4 55 74.5
Cpa.g.sc136.37 Carica papaya HOM05D003366 ORTHO05D004045 6.4e-16 87.4 55 74.5
Ca_06031_v3 Cicer arietinum L. HOM05D003366 ORTHO05D004045 6.4e-16 87.4 55 74.5
Sed0016337 Sechium edule HOM05D003366 ORTHO05D004045 6.4e-16 87.4 55 74.5
Hund03398 Selenicereus undatus HOM05D003366 ORTHO05D004045 6.4e-16 87.4 55 70.9
Sc21g0000490 Simmondsia chinensis HOM05D003366 ORTHO05D004045 6.4e-16 87.4 55 72.7
MSTRG.9698 Avicennia marina HOM05D003366 ORTHO05D004045 8.3e-16 87.0 55 72.7
Gohir.A11G148200 Gossypium hirsutum HOM05D003366 ORTHO05D004045 8.3e-16 87.0 55 74.5
Thecc.01G197700 Theobroma cacao HOM05D003366 ORTHO05D004045 8.3e-16 87.0 55 72.7
arahy.Tifrunner.gnm1.ann1.0B41PU Arachis hypogaea HOM05D003366 ORTHO05D004045 1.1e-15 86.7 55 72.7
BraA06t26847Z Brassica rapa HOM05D003366 ORTHO05D004045 1.1e-15 86.7 55 74.5
Dinv26592 Davidia involucrata HOM05D003366 ORTHO05D004045 1.1e-15 86.7 55 72.7
Thhalv10004384m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 1.1e-15 86.7 55 74.5
Glyma.02G259000 Glycine max HOM05D003366 ORTHO05D004045 1.1e-15 86.7 55 72.7
Glyma.14G053300 Glycine max HOM05D003366 ORTHO05D004045 1.1e-15 86.7 55 72.7
Peaxi162Scf00801g00730 Petunia axillaris HOM05D003366 ORTHO05D004045 1.1e-15 86.7 55 72.7
Psat1g185040 Pisum sativum HOM05D003366 ORTHO05D004045 1.1e-15 86.7 59 67.8
AT5G48220 Arabidopsis thaliana HOM05D003366 ORTHO05D004045 1.4e-15 86.3 55 70.9
MBI14_g24035_MAGBIO Magnolia biondii HOM05D003366 ORTHO05D004045 1.4e-15 86.3 55 72.7
TAR629G0562 Trochodendron aralioides HOM05D003366 ORTHO05D004045 1.4e-15 86.3 55 70.9
AL8G20910 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 1.9e-15 85.9 55 70.9
AL8G20960 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 1.9e-15 85.9 55 70.9
CiPaw.03G282800 Carya illinoinensis HOM05D003366 ORTHO05D004045 1.9e-15 85.9 55 70.9
PSO675G3120 Papaver somniferum HOM05D003366 ORTHO05D004045 1.9e-15 85.9 55 72.7
PGR031G3285 Punica granatum HOM05D003366 ORTHO05D004045 1.9e-15 85.9 55 70.9
VMungo0647G0370 Vigna mungo HOM05D003366 ORTHO05D004045 1.9e-15 85.9 54 72.2
AUR62008962 Chenopodium quinoa HOM05D003366 ORTHO05D004045 2.4e-15 85.5 55 69.1
Ciclev10015498m.g Citrus clementina HOM05D003366 ORTHO05D004045 2.4e-15 85.5 55 72.7
Nitab4.5_0000774g0060 Nicotiana tabacum HOM05D003366 ORTHO05D004045 2.4e-15 85.5 55 70.9
Thecc.01G197800 Theobroma cacao HOM05D003366 ORTHO05D006437 2.4e-15 85.5 55 70.9
Thecc.01G198100 Theobroma cacao HOM05D003366 ORTHO05D004045 2.4e-15 85.5 55 70.9
CSS0040673 Camellia sinensis var. sinensis HOM05D003366 ORTHO05D004045 3.2e-15 85.1 55 70.9
Lalb_Chr04g0250271 Lupinus albus HOM05D003366 ORTHO05D004045 3.2e-15 85.1 55 70.9
SalBow5G1323 Salvia bowleyana HOM05D003366 ORTHO05D004045 3.2e-15 85.1 55 69.1
SalBow5G5386 Salvia bowleyana HOM05D003366 ORTHO05D004045 3.2e-15 85.1 55 69.1
AUR62009285 Chenopodium quinoa HOM05D003366 ORTHO05D004045 4.1e-15 84.7 55 72.7
AUR62039696 Chenopodium quinoa HOM05D003366 ORTHO05D004045 4.1e-15 84.7 55 72.7
GSVIVG01030116001 Vitis vinifera HOM05D003366 ORTHO05D004045 4.1e-15 84.7 55 72.7
Aa31LG5G13060 Aethionema arabicum HOM05D003366 ORTHO05D004045 5.4e-15 84.3 55 69.1
AUR62014541 Chenopodium quinoa HOM05D003366 ORTHO05D004045 5.4e-15 84.3 55 69.1
SGA_v2.0_scaffold25G10778 Striga asiatica HOM05D003366 ORTHO05D004045 5.4e-15 84.3 55 69.1
vmacro09477 Vaccinium macrocarpon HOM05D003366 ORTHO05D004045 5.4e-15 84.3 55 70.9
Migut.O00185 Erythranthe guttata HOM05D003366 ORTHO05D004045 7.1e-15 84.0 55 67.3
Medtr5g084030 Medicago truncatula HOM05D003366 ORTHO05D004045 7.1e-15 84.0 55 70.9
Nitab4.5_0000025g0230 Nicotiana tabacum HOM05D003366 ORTHO05D004045 7.1e-15 84.0 55 69.1
QL04p067730 Quercus lobata HOM05D003366 ORTHO05D004045 7.1e-15 84.0 55 74.5
Solyc03g111850.3 Solanum lycopersicum HOM05D003366 ORTHO05D004045 7.1e-15 84.0 55 70.9
Ah.16g101920 Amaranthus hybridus HOM05D003366 ORTHO05D004045 9.2e-15 83.6 56 67.9
Cc04_g11110 Coffea canephora HOM05D003366 ORTHO05D004045 9.2e-15 83.6 55 69.1
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 9.2e-15 83.6 54 72.2
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 9.2e-15 83.6 54 72.2
MELO3C024189.2 Cucumis melo HOM05D003366 ORTHO05D004045 9.2e-15 83.6 55 72.7
FvH4_6g40500 Fragaria vesca HOM05D003366 ORTHO05D004045 9.2e-15 83.6 55 70.9
FAN02G0729 Fragaria x ananassa HOM05D003366 ORTHO05D004045 9.2e-15 83.6 55 70.9
FAN05G5269 Fragaria x ananassa HOM05D003366 ORTHO05D004045 9.2e-15 83.6 55 70.9
FAN09G3658 Fragaria x ananassa HOM05D004224 ORTHO05D006437 9.2e-15 83.6 55 70.9
Nn1g03151 Nelumbo nucifera HOM05D003366 ORTHO05D004045 9.2e-15 83.6 54 72.2
ATR0751G192 Amborella trichopoda HOM05D003366 ORTHO05D004045 1.2e-14 83.2 55 69.1
HanXRQChr11g0329411 Helianthus annuus HOM05D003366 ORTHO05D004045 1.2e-14 83.2 55 67.3
SGA_v2.0_scaffold7G04167 Striga asiatica HOM05D000527 ORTHO05D000559 1.2e-14 83.2 55 67.3
HPP92_022822 Vanilla planifolia HOM05D003366 ORTHO05D004045 1.2e-14 83.2 55 70.9
EL10Ac2g04609 Beta vulgaris HOM05D003366 ORTHO05D004045 1.6e-14 82.8 56 66.1
Cfa014212 Carpinus fangiana HOM05D003366 ORTHO05D004045 1.6e-14 82.8 54 72.2
Manes.12G063602 Manihot esculenta HOM05D003366 ORTHO05D004045 1.6e-14 82.8 55 72.7
CsaV3_7G002440 Cucumis sativus L. HOM05D003366 ORTHO05D004045 2.1e-14 82.4 55 70.9
ECA234G0856 Erigeron canadensis HOM05D003366 ORTHO05D004045 2.1e-14 82.4 56 67.9
Oeu045495.1 Olea europaea HOM05D003366 ORTHO05D004045 2.1e-14 82.4 55 67.3
Sopen03g030970 Solanum pennellii HOM05D003366 ORTHO05D004045 2.1e-14 82.4 55 69.1
Ah.16g105750 Amaranthus hybridus HOM05D003366 ORTHO05D004045 2.7e-14 82.0 59 66.1
Carub.0008s0779 Capsella rubella HOM05D003366 ORTHO05D004045 2.7e-14 82.0 55 67.3
HanXRQChr10g0306821 Helianthus annuus HOM05D003366 ORTHO05D004045 2.7e-14 82.0 58 65.5
Lalb_Chr10g0105441 Lupinus albus HOM05D003366 ORTHO05D004045 2.7e-14 82.0 55 67.3
Actinidia18830 Actinidia chinensis HOM05D003366 ORTHO05D004045 3.5e-14 81.6 55 67.3
EL10Ac2g04021 Beta vulgaris HOM05D003366 ORTHO05D004045 3.5e-14 81.6 55 69.1
CANSAT64G2473 Cannabis sativa HOM05D003366 ORTHO05D004045 3.5e-14 81.6 55 67.3
DCAR_019671 Daucus carota HOM05D003366 ORTHO05D004045 3.5e-14 81.6 55 69.1
Migut.D02018 Erythranthe guttata HOM05D003366 ORTHO05D004045 3.5e-14 81.6 55 67.3
Hma1.2p1_0599F.1_g187060 Hydrangea macrophylla HOM05D003366 ORTHO05D004045 3.5e-14 81.6 55 67.3
TAR626G1358 Trochodendron aralioides HOM05D003366 ORTHO05D004045 3.5e-14 81.6 55 67.3
CAN.G126.88 Capsicum annuum HOM05D003366 ORTHO05D004045 4.6e-14 81.3 55 69.1
ClCG02G002960 Citrullus lanatus HOM05D003366 ORTHO05D004045 4.6e-14 81.3 55 69.1
Nitab4.5_0003542g0080 Nicotiana tabacum HOM05D003366 ORTHO05D004045 4.6e-14 81.3 55 67.3
PSO210G3015 Papaver somniferum HOM05D003366 ORTHO05D004045 4.6e-14 81.3 55 69.1
PSO210G6970 Papaver somniferum HOM05D003366 ORTHO05D004045 4.6e-14 81.3 55 69.1
RcHm_v2.0_Chr2g0155751 Rosa chinensis HOM05D003366 ORTHO05D004045 6.0e-14 80.9 55 67.3
TPR.G20196 Trifolium pratense HOM05D003366 ORTHO05D004045 6.0e-14 80.9 51 72.5
FAN10G3881 Fragaria x ananassa HOM05D003366 ORTHO05D004045 7.8e-14 80.5 55 69.1
FAN14G5851 Fragaria x ananassa HOM05D003366 ORTHO05D004045 7.8e-14 80.5 55 69.1
Nitab4.5_0000510g0170 Nicotiana tabacum HOM05D003366 ORTHO05D004045 7.8e-14 80.5 55 67.3
Oeu045496.1 Olea europaea HOM05D003366 ORTHO05D004045 7.8e-14 80.5 55 65.5
Rhsim04G0030100 Rhododendron simsii HOM05D003366 ORTHO05D004045 7.8e-14 80.5 55 69.1
PGSC0003DMG400015153 Solanum tuberosum HOM05D003366 ORTHO05D004045 7.8e-14 80.5 55 67.3
Eucgr.A01368 Eucalyptus grandis HOM05D003366 ORTHO05D004045 1.0e-13 80.1 54 68.5
Zm00001eb424560 Zea mays HOM05D003366 ORTHO05D004045 1.0e-13 80.1 55 67.3
Oeu023460.1 Olea europaea HOM05D003366 ORTHO05D004045 1.7e-13 79.3 55 63.6
Peaxi162Scf00089g01132 Petunia axillaris HOM05D003366 ORTHO05D004045 1.7e-13 79.3 55 67.3
Lsat_1_v5_gn_7_97420 Lactuca sativa HOM05D003366 ORTHO05D004045 2.3e-13 79.0 52 67.3
CBR_g10789 Chara braunii HOM05D003366 ORTHO05D004045 3.0e-13 78.6 55 67.3
LjContig00357g0014369 Lotus japonicus HOM05D003366 ORTHO05D004045 3.9e-13 78.2 55 65.5
Lsat_1_v5_gn_5_122300 Lactuca sativa HOM05D003366 ORTHO05D004045 5.1e-13 77.8 55 63.6
Aqoxy3G01284 Aquilegia oxysepala HOM05D003366 ORTHO05D004045 6.6e-13 77.4 55 65.5
CDE02G1598 Ceratophyllum demersum HOM05D003366 ORTHO05D004045 6.6e-13 77.4 55 67.3
RcHm_v2.0_Chr5g0011911 Rosa chinensis HOM05D003366 ORTHO05D004045 6.6e-13 77.4 55 63.6
Hma1.2p1_0629F.1_g192240 Hydrangea macrophylla HOM05D003366 ORTHO05D004045 8.6e-13 77.0 55 63.6
Zm00001eb414460 Zea mays HOM05D003366 ORTHO05D004045 2.5e-12 75.5 55 63.6
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 3.3e-12 75.1 55 63.6
Lj8A136T94 Lonicera japonica HOM05D003366 ORTHO05D004045 4.3e-12 74.7 55 60.0
Aqoxy1G04276 Aquilegia oxysepala HOM05D003366 ORTHO05D004045 5.6e-12 74.3 55 67.3
Pp3c10_25830 Physcomitrium patens HOM05D003366 ORTHO05D004045 5.6e-12 74.3 55 63.6
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 7.3e-12 73.9 73 53.4
BcaC06g35870 Brassica carinata HOM05D003366 ORTHO05D027103 1.6e-11 72.8 33 100.0
PRCOL_00002196 Prasinoderma coloniale HOM05D003366 ORTHO05D004045 1.6e-11 72.8 55 60.0
SHI10170 Sapria himalayana HOM05D003366 ORTHO05D004045 1.6e-11 72.8 55 63.6
Thecc.10G171200 Theobroma cacao HOM05D003366 ORTHO05D004045 1.6e-11 72.8 56 60.7
Os09g0255400 Oryza sativa ssp. japonica HOM05D003366 ORTHO05D004045 2.1e-11 72.4 55 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1836 Anthoceros agrestis HOM05D003366 ORTHO05D004045 2.8e-11 72.0 55 61.8
Os08g0320400 Oryza sativa ssp. japonica HOM05D003366 ORTHO05D004045 2.8e-11 72.0 55 61.8
SEGI_01884 Sequoiadendron giganteum HOM05D003366 ORTHO05D004045 4.7e-11 71.2 54 61.1
Zm00001eb309260 Zea mays HOM05D003366 ORTHO05D004045 8.1e-11 70.5 55 60.0
Mapoly0007s0091 Marchantia polymorpha HOM05D003366 ORTHO05D004045 1.8e-10 69.3 55 58.2
Lj1A799T34 Lonicera japonica HOM05D003366 ORTHO05D004045 3.1e-10 68.6 72 47.2
Os04g0467700 Oryza sativa ssp. japonica HOM05D003366 ORTHO05D004045 5.2e-10 67.8 44 68.2
MCO11G068 Micromonas commoda HOM05D003366 ORTHO05D004045 4.4e-09 64.7 55 50.9
SMO143G0312 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 4.4e-09 64.7 55 54.5
unitig_21.g20442 Utricularia gibba HOM05D003366 ORTHO05D004045 4.9e-08 61.2 62 50.0
SEGI_10339 Sequoiadendron giganteum HOM05D003366 ORTHO05D004045 1.1e-07 60.1 55 50.9
Cre13.g602350 Chlamydomonas reinhardtii HOM05D003366 ORTHO05D004045 2.1e-06 55.8 55 47.3
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 6.0e-06 54.3 42 59.5


User provided reference genes

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