Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p09680 Brassica napus HOM05D000732 ORTHO05D013253 7.8e-42 173.3 85 100.0
BolC7t41407H Brassica oleracea HOM05D000732 ORTHO05D013253 5.6e-40 167.2 85 96.5
A04p20940 Brassica napus HOM05D000732 ORTHO05D013253 8.1e-39 163.3 85 95.3
A10p33080 Brassica napus HOM05D000732 ORTHO05D013253 2.9e-36 154.8 79 96.2
C04p39850 Brassica napus HOM05D000732 ORTHO05D013253 5.1e-33 144.1 85 85.9
Thhalv10007309m.g Eutrema salsugineum HOM05D000732 ORTHO05D007225 1.5e-29 132.5 83 79.5
BcaB03g11954 Brassica carinata HOM05D000732 ORTHO05D007225 1.7e-28 129.0 84 76.2
BcaC05g26291 Brassica carinata HOM05D000732 ORTHO05D007225 4.2e-27 124.4 85 74.1
BolC5t30996H Brassica oleracea HOM05D000732 ORTHO05D007225 4.2e-27 124.4 85 74.1
Carub.0001s2330 Capsella rubella HOM05D000732 ORTHO05D007225 5.5e-27 124.0 84 72.6
BcaC03g17270 Brassica carinata HOM05D000732 ORTHO05D013253 3.5e-26 121.3 85 75.3
AL1G37550 Arabidopsis lyrata HOM05D000732 ORTHO05D007225 5.1e-25 117.5 84 71.4
BcaC02g09190 Brassica carinata HOM05D000732 ORTHO05D013253 1.1e-24 116.3 78 75.6
BcaC07g39214 Brassica carinata HOM05D000732 ORTHO05D007225 1.1e-24 116.3 70 80.0
A09p41030 Brassica napus HOM05D000732 ORTHO05D007225 1.9e-24 115.5 70 80.0
AT1G23790 Arabidopsis thaliana HOM05D000732 ORTHO05D007225 3.3e-24 114.8 82 70.7
BcaC05g24917 Brassica carinata HOM05D000732 ORTHO05D013253 4.3e-24 114.4 70 80.0
C08p22100 Brassica napus HOM05D000732 ORTHO05D007225 7.4e-24 113.6 69 79.7
BolC8t49855H Brassica oleracea HOM05D000732 ORTHO05D007225 7.4e-24 113.6 69 79.7
BraA09t39596Z Brassica rapa HOM05D000732 ORTHO05D007225 1.1e-22 109.8 70 75.7
CARHR024210 Cardamine hirsuta HOM05D000732 ORTHO05D007225 4.0e-22 107.8 79 69.6
A08p28020 Brassica napus HOM05D000732 ORTHO05D007225 1.5e-21 105.9 67 76.1
BraA08t34732Z Brassica rapa HOM05D000732 ORTHO05D007225 1.5e-21 105.9 67 76.1
C05p22970 Brassica napus HOM05D000732 ORTHO05D007225 1.7e-20 102.4 70 74.3
Aa31LG7G7670 Aethionema arabicum HOM05D000732 ORTHO05D007225 6.5e-20 100.5 84 61.9
Sp5g25460 Schrenkiella parvula HOM05D000732 ORTHO05D007225 7.1e-19 97.1 84 58.3
C07p09660 Brassica napus HOM05D000732 ORTHO05D013253 2.7e-18 95.1 52 88.5
Carub.0002s1703 Capsella rubella HOM05D000732 ORTHO05D007225 4.6e-18 94.4 79 59.5
THA.LOC104808945 Tarenaya hassleriana HOM05D000732 ORTHO05D007225 4.6e-18 94.4 84 60.7
AL2G29650 Arabidopsis lyrata HOM05D000732 ORTHO05D007225 7.9e-18 93.6 85 57.6
Lalb_Chr05g0216901 Lupinus albus HOM05D000732 ORTHO05D007225 1.3e-17 92.8 81 55.6
A09p46000 Brassica napus HOM05D000732 ORTHO05D013253 2.3e-17 92.0 50 90.0
Cpa.g.sc69.30 Carica papaya HOM05D000732 ORTHO05D007225 3.9e-17 91.3 81 59.3
AT1G70340 Arabidopsis thaliana HOM05D000732 ORTHO05D007225 5.1e-17 90.9 79 59.5
arahy.Tifrunner.gnm1.ann1.S6CLIJ Arachis hypogaea HOM05D000732 ORTHO05D007225 8.7e-17 90.1 81 55.6
QL08p001505 Quercus lobata HOM05D000732 ORTHO05D013253 8.7e-17 90.1 81 58.0
QL08p001512 Quercus lobata HOM05D000732 ORTHO05D007225 8.7e-17 90.1 81 58.0
arahy.Tifrunner.gnm1.ann1.V0668Y Arachis hypogaea HOM05D000732 ORTHO05D007225 1.1e-16 89.7 81 55.6
CARHR063520 Cardamine hirsuta HOM05D000732 ORTHO05D007225 1.1e-16 89.7 84 53.6
BolC2t11300H Brassica oleracea HOM05D000732 ORTHO05D013253 1.9e-16 89.0 62 71.0
Lj3C1052T10 Lonicera japonica HOM05D000732 ORTHO05D007225 2.5e-16 88.6 81 55.6
ECA233G2480 Erigeron canadensis HOM05D000732 ORTHO05D007225 3.3e-16 88.2 81 54.3
MSTRG.7899 Avicennia marina HOM05D000732 ORTHO05D007225 5.7e-16 87.4 80 56.2
Oeu056733.2 Olea europaea HOM05D000732 ORTHO05D007225 5.7e-16 87.4 75 53.3
vmacro16252 Vaccinium macrocarpon HOM05D000732 ORTHO05D007225 5.7e-16 87.4 81 58.0
MD16G1092400 Malus domestica HOM05D000732 ORTHO05D007225 7.4e-16 87.0 82 54.9
Prupe.1G254000 Prunus persica HOM05D000732 ORTHO05D007225 1.6e-15 85.9 82 57.3
Duzib268G1676 Durio zibethinus HOM05D000732 ORTHO05D007225 2.2e-15 85.5 81 56.8
Manes.12G029000 Manihot esculenta HOM05D000732 ORTHO05D007225 2.2e-15 85.5 81 54.3
Hund05994 Selenicereus undatus HOM05D000732 ORTHO05D007225 2.2e-15 85.5 81 54.3
MD13G1091800 Malus domestica HOM05D000732 ORTHO05D007225 2.8e-15 85.1 82 53.7
Duzib248G1152 Durio zibethinus HOM05D000732 ORTHO05D007225 3.7e-15 84.7 81 55.6
Eucgr.B03344 Eucalyptus grandis HOM05D000732 ORTHO05D007225 3.7e-15 84.7 81 56.8
Cc11_g14660 Coffea canephora HOM05D000732 ORTHO05D007225 4.8e-15 84.3 84 54.8
EL10Ac6g13672 Beta vulgaris HOM05D000732 ORTHO05D007225 6.3e-15 84.0 82 56.1
BcaC02g09354 Brassica carinata HOM05D000732 ORTHO05D013253 8.2e-15 83.6 68 67.6
Ciclev10031068m.g Citrus clementina HOM05D000732 ORTHO05D007225 8.2e-15 83.6 81 55.6
TAR371G0352 Trochodendron aralioides HOM05D000732 ORTHO05D007225 8.2e-15 83.6 81 55.6
AUR62005377 Chenopodium quinoa HOM05D000732 ORTHO05D007225 1.4e-14 82.8 81 55.6
COL.COLO4_36966 Corchorus olitorius HOM05D000732 ORTHO05D007225 1.4e-14 82.8 81 55.6
Dinv15302 Davidia involucrata HOM05D000732 ORTHO05D007225 1.4e-14 82.8 80 58.8
Thecc.02G248500 Theobroma cacao HOM05D000732 ORTHO05D007225 1.8e-14 82.4 81 55.6
TWI36G1131 Tripterygium wilfordii HOM05D000732 ORTHO05D007225 1.8e-14 82.4 81 54.3
Sed0004489 Sechium edule HOM05D000732 ORTHO05D007225 2.4e-14 82.0 84 51.2
Glyma.01G031300 Glycine max HOM05D000732 ORTHO05D007225 3.1e-14 81.6 84 54.8
Glyma.02G034500 Glycine max HOM05D000732 ORTHO05D007225 3.1e-14 81.6 84 54.8
Rhsim12G0120000 Rhododendron simsii HOM05D000732 ORTHO05D007225 3.1e-14 81.6 81 54.3
RhsimUnG0193300 Rhododendron simsii HOM05D000732 ORTHO05D007225 3.1e-14 81.6 81 54.3
SalBow2G2423 Salvia bowleyana HOM05D000732 ORTHO05D007225 3.1e-14 81.6 82 51.2
Potri.008G192300 Populus trichocarpa HOM05D000732 ORTHO05D007225 4.1e-14 81.3 77 55.8
RcHm_v2.0_Chr4g0443831 Rosa chinensis HOM05D000732 ORTHO05D007225 4.1e-14 81.3 88 54.5
Sabra10G0027600 Salix brachista HOM05D000732 ORTHO05D007225 4.1e-14 81.3 81 55.6
VMungo1215G1082 Vigna mungo HOM05D000732 ORTHO05D007225 4.1e-14 81.3 84 54.8
Potri.010G038600 Populus trichocarpa HOM05D000732 ORTHO05D007225 5.3e-14 80.9 80 56.2
Ah.02g129920 Amaranthus hybridus HOM05D000732 ORTHO05D007225 6.9e-14 80.5 81 53.1
AUR62014040 Chenopodium quinoa HOM05D000732 ORTHO05D007225 6.9e-14 80.5 81 54.3
FvH4_4g34410 Fragaria vesca HOM05D000732 ORTHO05D007225 9.0e-14 80.1 88 53.4
FAN07G1798 Fragaria x ananassa HOM05D000732 ORTHO05D007225 9.0e-14 80.1 88 53.4
FAN12G2269 Fragaria x ananassa HOM05D000732 ORTHO05D007225 9.0e-14 80.1 88 53.4
FAN22G0662 Fragaria x ananassa HOM05D000732 ORTHO05D007225 9.0e-14 80.1 88 53.4
Aa31LG4G10600 Aethionema arabicum HOM05D000732 ORTHO05D007225 1.2e-13 79.7 83 50.6
Peaxi162Scf00338g00223 Petunia axillaris HOM05D000732 ORTHO05D007225 1.2e-13 79.7 85 47.1
Actinidia15046 Actinidia chinensis HOM05D000732 ORTHO05D007225 1.5e-13 79.3 79 51.9
CiPaw.05G150800 Carya illinoinensis HOM05D000732 ORTHO05D007225 1.5e-13 79.3 81 53.1
TAR680G0005 Trochodendron aralioides HOM05D000732 ORTHO05D007225 2.0e-13 79.0 83 54.2
TAR680G0006 Trochodendron aralioides HOM05D000732 ORTHO05D007225 2.0e-13 79.0 83 54.2
GSVIVG01020241001 Vitis vinifera HOM05D000732 ORTHO05D007225 2.0e-13 79.0 82 54.9
Hund25346 Selenicereus undatus HOM05D000732 ORTHO05D007225 2.6e-13 78.6 84 51.2
CSS0045437 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007225 3.4e-13 78.2 81 51.9
FAN17G2219 Fragaria x ananassa HOM05D000732 ORTHO05D007225 3.4e-13 78.2 88 53.4
PGR102G0434 Punica granatum HOM05D000732 ORTHO05D007225 3.4e-13 78.2 81 54.3
TWI75G0496 Tripterygium wilfordii HOM05D000732 ORTHO05D007225 3.4e-13 78.2 75 54.7
DCAR_031102 Daucus carota HOM05D000732 ORTHO05D007225 4.5e-13 77.8 81 54.3
CsaV3_2G024570 Cucumis sativus L. HOM05D000732 ORTHO05D007225 5.9e-13 77.4 79 48.1
Medtr5g034370 Medicago truncatula HOM05D000732 ORTHO05D007225 5.9e-13 77.4 82 54.9
Nitab4.5_0000113g0290 Nicotiana tabacum HOM05D000732 ORTHO05D007225 5.9e-13 77.4 86 48.8
Nitab4.5_0002494g0010 Nicotiana tabacum HOM05D000732 ORTHO05D007225 5.9e-13 77.4 86 48.8
Ca_04598_v3 Cicer arietinum L. HOM05D000732 ORTHO05D007225 1.0e-12 76.6 82 54.9
Haze_12177 Corylus avellana HOM05D000732 ORTHO05D007225 1.0e-12 76.6 75 53.3
Dinv24859 Davidia involucrata HOM05D000732 ORTHO05D007225 1.0e-12 76.6 81 51.9
Solyc05g005580.3 Solanum lycopersicum HOM05D000732 ORTHO05D007225 1.0e-12 76.6 86 47.7
Sopen05g001590 Solanum pennellii HOM05D000392 ORTHO05D000001 1.0e-12 76.6 86 47.7
TPR.G13569 Trifolium pratense HOM05D000732 ORTHO05D007225 1.3e-12 76.3 82 53.7
ClCG08G018070 Citrullus lanatus HOM05D000732 ORTHO05D007225 1.7e-12 75.9 61 57.4
Lj2g0021682 Lotus japonicus HOM05D000732 ORTHO05D007225 1.7e-12 75.9 82 53.7
TAR629G1031 Trochodendron aralioides HOM05D000732 ORTHO05D007225 1.7e-12 75.9 75 53.3
Cfa009143 Carpinus fangiana HOM05D000732 ORTHO05D007225 2.2e-12 75.5 75 53.3
CANSAT01G2807 Cannabis sativa HOM05D000732 ORTHO05D007225 2.9e-12 75.1 86 51.2
Hma1.2p1_0867F.1_g230180 Hydrangea macrophylla HOM05D000732 ORTHO05D007225 3.8e-12 74.7 83 51.8
Nn4g22799 Nelumbo nucifera HOM05D000732 ORTHO05D007225 3.8e-12 74.7 82 53.7
CAN.G388.57 Capsicum annuum HOM05D000732 ORTHO05D007225 5.0e-12 74.3 88 46.6
MELO3C010661.2 Cucumis melo HOM05D000732 ORTHO05D007225 5.0e-12 74.3 76 47.4
Phvul.002G071800 Phaseolus vulgaris HOM05D000732 ORTHO05D007225 5.0e-12 74.3 84 53.6
Psat2g106200 Pisum sativum HOM05D000732 ORTHO05D007225 6.5e-12 73.9 82 53.7
Gohir.D02G162800 Gossypium hirsutum HOM05D000732 ORTHO05D007225 8.5e-12 73.6 75 54.7
Gorai.005G182800 Gossypium raimondii HOM05D000732 ORTHO05D007225 8.5e-12 73.6 75 54.7
Sabra08G0145800 Salix brachista HOM05D000732 ORTHO05D007225 8.5e-12 73.6 78 52.6
Gohir.A03G140000 Gossypium hirsutum HOM05D000732 ORTHO05D007225 1.1e-11 73.2 75 53.3
Aqoxy3G01008 Aquilegia oxysepala HOM05D000732 ORTHO05D007225 2.5e-11 72.0 81 50.6
Sc11g0001190 Simmondsia chinensis HOM05D000732 ORTHO05D007225 5.5e-11 70.9 85 48.2
Lsat_1_v5_gn_8_157120 Lactuca sativa HOM05D000732 ORTHO05D007225 1.2e-10 69.7 82 51.2
unitig_22.g6465 Utricularia gibba HOM05D000732 ORTHO05D007225 1.2e-10 69.7 69 49.3
unitig_25.g30566 Utricularia gibba HOM05D000732 ORTHO05D007225 1.2e-10 69.7 69 49.3
Migut.L01414 Erythranthe guttata HOM05D000732 ORTHO05D007225 1.6e-10 69.3 70 51.4
PSO832G2552 Papaver somniferum HOM05D000732 ORTHO05D007225 1.6e-10 69.3 75 49.3
SGA_v2.0_scaffold165G38244 Striga asiatica HOM05D000732 ORTHO05D007225 2.1e-10 68.9 83 47.0
Medtr5g034380 Medicago truncatula HOM05D000732 ORTHO05D013253 4.6e-10 67.8 58 58.6
PSO063G5642 Papaver somniferum HOM05D000732 ORTHO05D007225 4.6e-10 67.8 77 46.8
ATR0730G107 Amborella trichopoda HOM05D000732 ORTHO05D007225 1.0e-09 66.6 64 51.6
BcaB01g00596 Brassica carinata HOM05D000732 ORTHO05D013253 2.3e-09 65.5 50 64.0
MBI16_g26454_MAGBIO Magnolia biondii HOM05D000732 ORTHO05D007225 2.3e-09 65.5 90 46.7
Nitab4.5_0004308g0060 Nicotiana tabacum HOM05D000732 ORTHO05D007225 3.9e-09 64.7 67 49.3
Zm00001eb126560 Zea mays HOM05D000732 ORTHO05D007225 5.1e-09 64.3 70 48.6
ECA234G3466 Erigeron canadensis HOM05D000732 ORTHO05D007225 2.5e-08 62.0 80 47.5
HanXRQChr08g0208801 Helianthus annuus HOM05D000732 ORTHO05D007225 5.7e-08 60.8 85 44.7
Lsat_1_v5_gn_4_5860 Lactuca sativa HOM05D000732 ORTHO05D007225 5.7e-08 60.8 69 47.8
SHI27223 Sapria himalayana HOM05D000732 ORTHO05D007225 5.7e-08 60.8 80 42.5
HanXRQChr17g0569811 Helianthus annuus HOM05D000732 ORTHO05D007225 2.8e-07 58.5 67 44.8
Hma1.2p1_0421F.1_g149940 Hydrangea macrophylla HOM05D000732 ORTHO05D013253 1.1e-06 56.6 66 48.5
PGSC0003DMG400030993 Solanum tuberosum HOM05D000732 ORTHO05D007225 4.1e-06 54.7 86 38.4


User provided reference genes

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