Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 7.8e-170 600.5 332 100.0
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.8e-166 589.3 332 97.9
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.8e-166 589.3 332 97.9
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.5e-165 586.3 327 99.4
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.3e-136 488.8 335 83.9
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 6.2e-135 484.6 267 99.6
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 5.1e-129 464.9 331 84.0
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 8.7e-129 464.2 340 81.2
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.6e-128 461.5 339 80.8
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 4.8e-127 458.4 337 80.4
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.5e-125 453.4 327 82.6
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 3.4e-125 452.2 324 83.3
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 6.0e-122 441.4 317 82.6
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.1e-120 437.2 337 78.9
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 7.4e-120 434.5 317 81.4
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 3.2e-115 419.1 322 78.6
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 6.0e-114 414.8 322 77.3
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.0e-101 373.2 349 65.3
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 8.5e-100 367.9 349 65.0
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.1e-94 350.9 347 62.8
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 2.2e-92 343.2 347 60.2
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 4.2e-91 339.0 347 59.4
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 5.5e-91 338.6 348 58.9
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 7.2e-91 338.2 346 58.4
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.2e-90 337.4 346 58.7
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 8.0e-90 334.7 348 58.3
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.0e-89 334.3 348 59.5
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.3e-89 333.2 348 58.3
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 3.0e-89 332.8 348 58.3
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.5e-88 330.5 346 56.9
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.6e-88 329.7 347 57.3
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 5.7e-88 328.6 348 56.9
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 2.8e-87 326.2 347 58.2
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 6.3e-87 325.1 340 57.9
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 8.2e-87 324.7 346 57.5
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.8e-86 323.6 346 57.2
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 2.4e-86 323.2 348 56.0
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 5.3e-86 322.0 341 58.4
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 7.0e-86 321.6 348 57.2
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 7.0e-86 321.6 346 55.8
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 7.0e-86 321.6 347 57.6
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.0e-85 320.1 346 55.5
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 4.5e-85 318.9 347 56.5
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 5.9e-85 318.5 346 56.1
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 5.9e-85 318.5 346 56.1
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 7.7e-85 318.2 346 55.2
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.0e-84 317.8 346 55.5
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 1.0e-84 317.8 346 56.1
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.7e-84 317.0 338 56.8
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.9e-84 316.2 346 56.1
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 5.0e-84 315.5 346 56.1
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 5.0e-84 315.5 346 54.6
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 8.5e-84 314.7 346 56.4
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.1e-83 314.3 346 55.8
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.5e-83 313.9 337 57.0
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.5e-83 313.9 346 55.8
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.9e-83 313.5 347 55.3
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.5e-83 313.2 316 60.1
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 7.2e-83 311.6 342 56.1
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 9.4e-83 311.2 346 55.5
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.2e-82 310.8 316 57.9
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.6e-82 310.5 370 53.0
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.4e-81 307.4 348 53.4
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.8e-81 307.0 348 55.7
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.7e-81 305.1 341 56.3
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 6.7e-81 305.1 344 55.5
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 8.8e-81 304.7 342 58.5
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.2e-80 304.3 346 56.4
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 4.4e-80 302.4 324 57.7
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 4.4e-80 302.4 346 55.8
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 7.5e-80 301.6 347 55.0
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 9.7e-80 301.2 342 54.4
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 9.7e-80 301.2 341 55.4
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 4.8e-79 298.9 334 56.0
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 8.2e-79 298.1 348 54.6
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.1e-78 297.7 346 53.8
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.8e-78 297.0 346 53.8
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 2.4e-78 296.6 346 54.6
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 3.1e-78 296.2 315 55.2
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 2.0e-77 293.5 348 53.7
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 4.5e-77 292.4 315 54.6
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 2.9e-76 289.7 346 52.9
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 8.5e-76 288.1 348 52.6
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 9.4e-75 284.6 280 58.6
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 2.7e-74 283.1 320 54.4
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 4.7e-74 282.3 346 52.3
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 6.1e-74 282.0 348 51.4
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.0e-73 281.2 355 51.3
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 1.0e-73 281.2 343 52.5
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 6.8e-73 278.5 336 54.5
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 5.7e-72 275.4 346 49.7
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.7e-71 273.9 307 56.7
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.2e-71 273.5 346 50.9
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.8e-71 273.1 353 48.7
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 6.3e-71 271.9 350 50.9
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 8.3e-71 271.6 346 50.3
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 8.3e-71 271.6 337 50.4
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 3.1e-70 269.6 331 52.0
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 5.4e-70 268.9 347 51.3
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.7e-69 266.5 320 51.2
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 7.7e-69 265.0 319 50.8
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.0e-68 264.6 337 49.0
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 8.6e-68 261.5 322 50.9
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 5.5e-67 258.8 331 52.6
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.2e-66 257.7 348 47.4
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.6e-66 257.3 342 48.5
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.1e-66 256.9 325 50.8
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 6.1e-66 255.4 402 45.3
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.0e-66 255.0 346 48.3
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.0e-66 255.0 346 48.3
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.0e-65 254.6 320 49.7
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.8e-65 253.8 324 53.4
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.5e-64 250.8 347 49.3
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.0e-64 250.4 281 54.1
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 7.5e-64 248.4 347 48.7
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-63 247.7 258 57.8
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.7e-63 247.3 347 49.0
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 2.2e-63 246.9 258 56.6
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 3.7e-63 246.1 338 48.5
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.1e-62 244.6 246 58.1
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 7.0e-62 241.9 346 47.7
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 2.0e-61 240.4 270 54.1
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 2.7e-61 240.0 276 54.0
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.7e-61 240.0 339 46.3
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 4.5e-61 239.2 346 46.0
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 7.8e-61 238.4 339 47.5
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 4.3e-59 232.6 309 48.5
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 1.6e-58 230.7 331 48.3
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.6e-58 229.6 343 45.2
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 8.0e-58 228.4 309 47.9
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 8.0e-58 228.4 290 48.3
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 8.0e-58 228.4 265 51.3
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 1.0e-57 228.0 346 44.5
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.0e-57 228.0 346 45.4
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 5.2e-57 225.7 348 45.4
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 6.8e-57 225.3 290 50.3
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 2.2e-55 220.3 323 46.7
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.2e-55 220.3 288 49.0
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 6.4e-55 218.8 348 44.3
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 9.2e-54 214.9 346 46.0
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 3.0e-52 209.9 269 49.4
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.1e-49 199.9 277 52.3
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 5.2e-49 199.1 337 42.4
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 1.5e-48 197.6 138 80.4
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 7.0e-46 188.7 218 51.8
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 3.5e-45 186.4 328 39.6
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.9e-44 183.0 341 40.2
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 6.6e-44 182.2 319 40.8
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.1e-43 181.4 297 45.8
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 1.1e-43 181.4 324 41.4
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.3e-43 179.9 199 50.8
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 3.3e-43 179.9 324 38.3
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 2.3e-41 173.7 296 43.2
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 5.2e-41 172.6 346 38.7
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 3.2e-38 163.3 322 42.5
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 4.1e-38 162.9 261 42.1
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 2.3e-36 157.1 139 61.9
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 7.3e-35 152.1 267 44.2
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.8e-34 150.2 158 57.0
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.1e-33 148.3 290 38.3
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 5.2e-33 146.0 176 49.4
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.5e-32 144.4 336 33.0
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 8.4e-31 138.7 314 39.2
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 8.4e-31 138.7 314 39.2
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.1e-27 128.3 347 35.2
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 2.5e-27 127.1 314 33.8
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 3.1e-25 120.2 344 27.6
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 4.9e-23 112.8 127 62.2
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 1.7e-20 104.4 267 36.7
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 2.1e-18 97.4 111 61.3
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 3.6e-18 96.7 172 41.3
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 3.4e-16 90.1 185 36.2
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 2.4e-14 84.0 55 81.8
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 3.0e-12 77.0 54 77.8
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.8e-09 67.8 132 46.2
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 5.8e-08 62.8 125 43.2


User provided reference genes

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