Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p04700 Brassica napus HOM05D002139 ORTHO05D002264 3.0e-46 188.0 84 100.0
BolC7t40870H Brassica oleracea HOM05D002139 ORTHO05D002264 4.0e-14 81.3 60 63.3
C04p54370 Brassica napus HOM05D002139 ORTHO05D002264 2.0e-13 79.0 60 60.0
BcaC02g08427 Brassica carinata HOM05D000888 ORTHO05D000740 7.6e-13 77.0 39 84.6
BcaC08g46746 Brassica carinata HOM05D002139 ORTHO05D002264 7.6e-13 77.0 44 75.0
A10p29920 Brassica napus HOM05D002139 ORTHO05D002264 7.6e-13 77.0 39 84.6
BraA10t45031Z Brassica rapa HOM05D002139 ORTHO05D002264 7.6e-13 77.0 39 84.6
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 1.3e-12 76.3 60 56.7
BolC8t51613H Brassica oleracea HOM05D002139 ORTHO05D002264 1.3e-12 76.3 60 56.7
BcaC06g32571 Brassica carinata HOM05D002139 ORTHO05D002264 1.7e-12 75.9 39 82.1
BolC4t26981H Brassica oleracea HOM05D002139 ORTHO05D002264 1.7e-12 75.9 60 58.3
C09p70330 Brassica napus HOM05D002139 ORTHO05D002264 2.2e-12 75.5 39 82.1
BraA02t04880Z Brassica rapa HOM05D002139 ORTHO05D002264 2.2e-12 75.5 42 71.4
Sp6g36380 Schrenkiella parvula HOM05D002139 ORTHO05D002264 2.9e-12 75.1 39 82.1
BcaB05g21669 Brassica carinata HOM05D002139 ORTHO05D002264 6.4e-12 73.9 42 71.4
BcaC07g41040 Brassica carinata HOM05D002139 ORTHO05D002264 6.4e-12 73.9 39 79.5
BcaC03g13167 Brassica carinata HOM05D002139 ORTHO05D002264 8.4e-12 73.6 42 69.0
C02p02710 Brassica napus HOM05D002139 ORTHO05D002264 8.4e-12 73.6 42 69.0
BolC2t06235H Brassica oleracea HOM05D002139 ORTHO05D002264 8.4e-12 73.6 42 69.0
AL6G16570 Arabidopsis lyrata HOM05D002139 ORTHO05D002264 1.1e-11 73.2 39 74.4
Thhalv10016064m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 1.9e-11 72.4 39 79.5
AT5G06480 Arabidopsis thaliana HOM05D002139 ORTHO05D002264 3.2e-11 71.6 39 71.8
BolC9t56183H Brassica oleracea HOM05D000209 ORTHO05D000129 4.1e-11 71.2 33 93.9
Ciclev10013007m.g Citrus clementina HOM05D002139 ORTHO05D002264 4.1e-11 71.2 42 71.4
Carub.0006s0536 Capsella rubella HOM05D002139 ORTHO05D002264 7.1e-11 70.5 39 69.2
Glyma.10G083300 Glycine max HOM05D002139 ORTHO05D002264 7.1e-11 70.5 42 69.0
Sp3g10010 Schrenkiella parvula HOM05D002139 ORTHO05D002264 7.1e-11 70.5 64 54.7
Thecc.05G107700 Theobroma cacao HOM05D002139 ORTHO05D002264 7.1e-11 70.5 42 69.0
Eucgr.K01917 Eucalyptus grandis HOM05D002139 ORTHO05D002264 1.2e-10 69.7 39 74.4
Glyma.02G193900 Glycine max HOM05D002139 ORTHO05D002264 1.2e-10 69.7 36 77.8
Gohir.D04G092600 Gossypium hirsutum HOM05D002139 ORTHO05D002264 1.2e-10 69.7 39 71.8
Carub.0003s1112 Capsella rubella HOM05D002139 ORTHO05D002264 1.6e-10 69.3 42 69.0
Eucgr.A02564 Eucalyptus grandis HOM05D002139 ORTHO05D002264 1.6e-10 69.3 67 50.7
Lalb_Chr06g0172701 Lupinus albus HOM05D002139 ORTHO05D002264 1.6e-10 69.3 42 66.7
QL07p027306 Quercus lobata HOM05D002139 ORTHO05D002264 1.6e-10 69.3 42 69.0
THA.LOC104816636 Tarenaya hassleriana HOM05D002139 ORTHO05D002264 1.6e-10 69.3 42 69.0
A03p37280 Brassica napus HOM05D002139 ORTHO05D002264 2.1e-10 68.9 39 74.4
C03p45140 Brassica napus HOM05D002139 ORTHO05D002264 2.1e-10 68.9 39 74.4
BolC3t16778H Brassica oleracea HOM05D002139 ORTHO05D002264 2.1e-10 68.9 39 74.4
BraA03t12888Z Brassica rapa HOM05D002139 ORTHO05D002264 2.1e-10 68.9 39 74.4
Gohir.A04G055400 Gossypium hirsutum HOM05D002139 ORTHO05D002264 2.1e-10 68.9 39 71.8
Phvul.007G266700 Phaseolus vulgaris HOM05D002139 ORTHO05D002264 2.1e-10 68.9 42 66.7
TWI74G1382 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 2.1e-10 68.9 42 66.7
VMungo0720G0286 Vigna mungo HOM05D002139 ORTHO05D002264 2.1e-10 68.9 42 69.0
AT3G11780 Arabidopsis thaliana HOM05D002139 ORTHO05D002264 2.7e-10 68.6 39 74.4
Prupe.7G092100 Prunus persica HOM05D002139 ORTHO05D002264 2.7e-10 68.6 39 71.8
PGR004G2773 Punica granatum HOM05D002139 ORTHO05D002264 2.7e-10 68.6 42 66.7
BolC1t05288H Brassica oleracea HOM05D002139 ORTHO05D002264 3.5e-10 68.2 39 74.4
BraA01t04159Z Brassica rapa HOM05D002139 ORTHO05D002264 3.5e-10 68.2 39 74.4
COL.COLO4_29527 Corchorus olitorius HOM05D002139 ORTHO05D002264 3.5e-10 68.2 39 71.8
arahy.Tifrunner.gnm1.ann1.BQ28WB Arachis hypogaea HOM05D002139 ORTHO05D002264 4.6e-10 67.8 39 66.7
arahy.Tifrunner.gnm1.ann1.J3XN27 Arachis hypogaea HOM05D002139 ORTHO05D002264 4.6e-10 67.8 39 66.7
Cpa.g.sc1467.2 Carica papaya HOM05D002139 ORTHO05D002264 4.6e-10 67.8 39 69.2
BcaB04g18660 Brassica carinata HOM05D002139 ORTHO05D002264 6.0e-10 67.4 39 74.4
BcaC05g29330 Brassica carinata HOM05D002139 ORTHO05D002264 6.0e-10 67.4 39 71.8
BcaC05g29331 Brassica carinata HOM05D002139 ORTHO05D002264 6.0e-10 67.4 39 71.8
A05p37560 Brassica napus HOM05D002139 ORTHO05D002264 6.0e-10 67.4 39 71.8
C05p56120 Brassica napus HOM05D002139 ORTHO05D002264 6.0e-10 67.4 39 71.8
BolC5t34279H Brassica oleracea HOM05D002139 ORTHO05D002264 6.0e-10 67.4 39 71.8
BraA05t22554Z Brassica rapa HOM05D002139 ORTHO05D002264 6.0e-10 67.4 39 71.8
Cfa020059 Carpinus fangiana HOM05D002139 ORTHO05D002264 6.0e-10 67.4 42 64.3
Haze_20139 Corylus avellana HOM05D002139 ORTHO05D002264 6.0e-10 67.4 42 64.3
Gorai.009G394500 Gossypium raimondii HOM05D002139 ORTHO05D002264 6.0e-10 67.4 39 69.2
Lj1A437T6 Lonicera japonica HOM05D002139 ORTHO05D002264 6.0e-10 67.4 42 64.3
Lj1C435G7 Lonicera japonica HOM05D002139 ORTHO05D002264 6.0e-10 67.4 42 64.3
MD12G1042800 Malus domestica HOM05D002139 ORTHO05D002264 6.0e-10 67.4 39 69.2
MD14G1041700 Malus domestica HOM05D002139 ORTHO05D002264 6.0e-10 67.4 39 69.2
Manes.08G035400 Manihot esculenta HOM05D002139 ORTHO05D002264 6.0e-10 67.4 42 64.3
PGR142G1998 Punica granatum HOM05D002139 ORTHO05D002264 6.0e-10 67.4 39 71.8
Atru.chr8.1316 Acer truncatum HOM05D002139 ORTHO05D002264 7.8e-10 67.0 42 64.3
BcaB06g25584 Brassica carinata HOM05D002139 ORTHO05D002264 7.8e-10 67.0 39 74.4
BcaC01g04086 Brassica carinata HOM05D002139 ORTHO05D002264 7.8e-10 67.0 33 84.8
CARHR086340 Cardamine hirsuta HOM05D002139 ORTHO05D002264 7.8e-10 67.0 39 71.8
CARHR206710 Cardamine hirsuta HOM05D002139 ORTHO05D002264 1.0e-09 66.6 42 59.5
Duzib106G1445 Durio zibethinus HOM05D002139 ORTHO05D002264 1.0e-09 66.6 39 69.2
Thhalv10021698m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 1.3e-09 66.2 39 71.8
FvH4_6g20650 Fragaria vesca HOM05D002139 ORTHO05D002264 1.3e-09 66.2 46 63.0
FAN02G1727 Fragaria x ananassa HOM05D002139 ORTHO05D002264 1.3e-09 66.2 46 63.0
FAN14G5094 Fragaria x ananassa HOM05D002139 ORTHO05D002264 1.3e-09 66.2 46 63.0
Sc07g0006390 Simmondsia chinensis HOM05D002139 ORTHO05D002264 1.3e-09 66.2 33 78.8
BcaC09g48193 Brassica carinata HOM05D002139 ORTHO05D002264 1.7e-09 65.9 39 71.8
Ca_11675_v3 Cicer arietinum L. HOM05D002139 ORTHO05D002264 1.7e-09 65.9 42 59.5
FAN05G0316 Fragaria x ananassa HOM05D002139 ORTHO05D002264 1.7e-09 65.9 46 63.0
FAN05G4464 Fragaria x ananassa HOM05D002139 ORTHO05D002264 1.7e-09 65.9 46 63.0
FAN09G2846 Fragaria x ananassa HOM05D002139 ORTHO05D002264 1.7e-09 65.9 46 63.0
Lalb_Chr02g0154331 Lupinus albus HOM05D002139 ORTHO05D002264 1.7e-09 65.9 33 75.8
RcHm_v2.0_Chr3g0476531 Rosa chinensis HOM05D002139 ORTHO05D002264 1.7e-09 65.9 46 63.0
CiPaw.09G022200 Carya illinoinensis HOM05D002139 ORTHO05D002264 2.3e-09 65.5 42 64.3
Migut.J00746 Erythranthe guttata HOM05D002139 ORTHO05D002264 2.3e-09 65.5 57 49.1
GSVIVG01022566001 Vitis vinifera HOM05D002139 ORTHO05D002264 2.3e-09 65.5 42 59.5
CiPaw.10G019300 Carya illinoinensis HOM05D002139 ORTHO05D002264 3.9e-09 64.7 42 61.9
Duzib093G2229 Durio zibethinus HOM05D002139 ORTHO05D002264 3.9e-09 64.7 33 78.8
AL3G23360 Arabidopsis lyrata HOM05D002139 ORTHO05D002264 5.1e-09 64.3 39 66.7
Medtr1g055435 Medicago truncatula HOM05D002139 ORTHO05D002264 5.1e-09 64.3 42 57.1
Dinv31779 Davidia involucrata HOM05D002139 ORTHO05D002264 6.6e-09 63.9 42 64.3
Lj5g0006018 Lotus japonicus HOM05D002139 ORTHO05D002264 8.7e-09 63.5 42 59.5
AUR62030707 Chenopodium quinoa HOM05D002139 ORTHO05D002264 1.9e-08 62.4 45 57.8
AUR62036347 Chenopodium quinoa HOM05D002139 ORTHO05D002264 1.9e-08 62.4 40 62.5
TPR.G9689 Trifolium pratense HOM05D002139 ORTHO05D002264 1.9e-08 62.4 36 61.1
TWI53G0030 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 3.3e-08 61.6 39 61.5
TAR369G0016 Trochodendron aralioides HOM05D002139 ORTHO05D002264 4.3e-08 61.2 39 64.1
ATR0697G252 Amborella trichopoda HOM05D002139 ORTHO05D002264 7.3e-08 60.5 42 52.4
Dinv12355 Davidia involucrata HOM05D002139 ORTHO05D002264 7.3e-08 60.5 42 59.5
vmacro20568 Vaccinium macrocarpon HOM05D002139 ORTHO05D002264 9.6e-08 60.1 42 54.8
Hma1.2p1_0064F.1_g034550 Hydrangea macrophylla HOM05D002139 ORTHO05D002264 1.2e-07 59.7 36 63.9
Oeu003849.1 Olea europaea HOM05D002139 ORTHO05D002264 1.2e-07 59.7 57 45.6
Oeu003851.1 Olea europaea HOM05D000279 ORTHO05D000957 1.2e-07 59.7 57 45.6
CDE04G2829 Ceratophyllum demersum HOM05D002139 ORTHO05D002264 2.1e-07 58.9 39 53.8
Medtr1g055425 Medicago truncatula HOM05D002139 ORTHO05D002264 2.1e-07 58.9 41 56.1
Sc24g0002480 Simmondsia chinensis HOM05D002139 ORTHO05D002264 2.8e-07 58.5 42 50.0
TAR636G2481 Trochodendron aralioides HOM05D002139 ORTHO05D002264 2.8e-07 58.5 42 52.4
unitig_578.g15803 Utricularia gibba HOM05D002139 ORTHO05D002264 2.8e-07 58.5 39 64.1
Gohir.D06G106000 Gossypium hirsutum HOM05D002139 ORTHO05D002264 3.6e-07 58.2 42 52.4
Gorai.010G079000 Gossypium raimondii HOM05D002139 ORTHO05D002264 3.6e-07 58.2 42 52.4
Gorai.010G120500 Gossypium raimondii HOM05D002139 ORTHO05D002264 3.6e-07 58.2 42 52.4
Gorai.013G122500 Gossypium raimondii HOM05D002139 ORTHO05D002264 3.6e-07 58.2 42 52.4
Gohir.D05G080300 Gossypium hirsutum HOM05D002139 ORTHO05D002264 4.7e-07 57.8 42 52.4
Gorai.009G082000 Gossypium raimondii HOM05D002139 ORTHO05D002264 4.7e-07 57.8 42 52.4
MBI11_g04609_MAGBIO Magnolia biondii HOM05D002139 ORTHO05D002264 4.7e-07 57.8 57 42.1
Nn6g34623 Nelumbo nucifera HOM05D002139 ORTHO05D002264 4.7e-07 57.8 42 54.8
Gohir.D07G183700 Gossypium hirsutum HOM05D002139 ORTHO05D002264 6.2e-07 57.4 42 52.4
Gohir.D07G195900 Gossypium hirsutum HOM05D002139 ORTHO05D002264 6.2e-07 57.4 42 52.4
THA.LOC104810941 Tarenaya hassleriana HOM05D002139 ORTHO05D002264 6.2e-07 57.4 36 58.3
Actinidia03869 Actinidia chinensis HOM05D002139 ORTHO05D002264 8.1e-07 57.0 52 48.1
Gohir.A05G077500 Gossypium hirsutum HOM05D002139 ORTHO05D002264 8.1e-07 57.0 36 58.3
PGR119G2506 Punica granatum HOM05D002139 ORTHO05D002264 8.1e-07 57.0 42 42.9
Gorai.001G219400 Gossypium raimondii HOM05D002139 ORTHO05D002264 1.1e-06 56.6 42 50.0
Actinidia37762 Actinidia chinensis HOM05D002139 ORTHO05D002264 1.4e-06 56.2 42 52.4
MSTRG.19337 Avicennia marina HOM05D002139 ORTHO05D002264 1.4e-06 56.2 39 59.0
CDE07G0340 Ceratophyllum demersum HOM05D002139 ORTHO05D002264 1.4e-06 56.2 65 36.9
Lj2A952G13 Lonicera japonica HOM05D002139 ORTHO05D002264 1.4e-06 56.2 36 58.3
MBI05_g18604_MAGBIO Magnolia biondii HOM05D002139 ORTHO05D002264 1.4e-06 56.2 42 52.4
Rhsim01G0068700 Rhododendron simsii HOM05D002139 ORTHO05D002264 1.4e-06 56.2 42 50.0
Psat6g126240 Pisum sativum HOM05D002139 ORTHO05D002264 1.8e-06 55.8 39 51.3
CANSAT64G0105 Cannabis sativa HOM05D002139 ORTHO05D002264 2.4e-06 55.5 60 46.7
CANSAT64G2342 Cannabis sativa HOM05D002139 ORTHO05D002264 2.4e-06 55.5 60 46.7
CDE06G1690 Ceratophyllum demersum HOM05D002139 ORTHO05D002264 2.4e-06 55.5 39 51.3
Gohir.D13G108950 Gossypium hirsutum HOM05D002139 ORTHO05D002264 2.4e-06 55.5 42 50.0
ClCG03G011930 Citrullus lanatus HOM05D002139 ORTHO05D002264 3.1e-06 55.1 43 53.5
Cc06_g06770 Coffea canephora HOM05D002139 ORTHO05D002264 3.1e-06 55.1 39 56.4
MELO3C009994.2 Cucumis melo HOM05D002139 ORTHO05D002264 3.1e-06 55.1 43 53.5
CsaV3_1G044000 Cucumis sativus L. HOM05D002139 ORTHO05D002264 3.1e-06 55.1 43 53.5
Gohir.D07G117500 Gossypium hirsutum HOM05D002139 ORTHO05D002264 3.1e-06 55.1 42 50.0
Gorai.001G126400 Gossypium raimondii HOM05D002139 ORTHO05D002264 3.1e-06 55.1 42 50.0
Phvul.005G117800 Phaseolus vulgaris HOM05D002139 ORTHO05D002264 4.0e-06 54.7 43 48.8
Phvul.005G117866 Phaseolus vulgaris HOM05D002139 ORTHO05D002264 4.0e-06 54.7 43 48.8
Carub.0005s0985 Capsella rubella HOM05D002139 ORTHO05D002264 5.2e-06 54.3 39 53.8
Thhalv10010794m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 5.2e-06 54.3 43 55.8
TAR633G0116 Trochodendron aralioides HOM05D002139 ORTHO05D002264 5.2e-06 54.3 42 52.4
EL10Ac7g16277 Beta vulgaris HOM05D002139 ORTHO05D002264 6.9e-06 53.9 42 50.0
CSS0025933 Camellia sinensis var. sinensis HOM05D002139 ORTHO05D002264 6.9e-06 53.9 42 50.0
CSS0027061 Camellia sinensis var. sinensis HOM05D002139 ORTHO05D002264 6.9e-06 53.9 42 50.0
AUR62001572 Chenopodium quinoa HOM05D002139 ORTHO05D002264 6.9e-06 53.9 42 50.0
COL.COLO4_25392 Corchorus olitorius HOM05D002139 ORTHO05D002264 6.9e-06 53.9 39 51.3
Atru.chr3.3084 Acer truncatum HOM05D002139 ORTHO05D002264 9.0e-06 53.5 39 48.7
Ciclev10029503m.g Citrus clementina HOM05D002139 ORTHO05D002264 9.0e-06 53.5 62 38.7
Duzib168G0322 Durio zibethinus HOM05D002139 ORTHO05D002264 9.0e-06 53.5 42 47.6
Thecc.09G270000 Theobroma cacao HOM05D002139 ORTHO05D002264 9.0e-06 53.5 42 50.0


User provided reference genes

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