Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 5.7e-304 1047.0 607 100.0
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 1.7e-303 1045.4 607 99.8
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 9.5e-299 1029.6 607 98.5
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 6.6e-260 900.6 617 88.7
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 6.6e-260 900.6 617 88.7
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 2.4e-225 785.8 639 73.7
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 3.6e-189 665.6 671 61.8
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 7.0e-177 624.8 643 61.4
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 6.0e-176 621.7 631 65.8
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 4.1e-169 599.0 653 58.0
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 3.5e-168 595.9 636 61.0
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 6.0e-168 595.1 635 61.6
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 2.6e-163 579.7 626 61.2
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 2.9e-162 576.2 626 61.0
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 8.3e-162 574.7 614 60.7
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 2.1e-141 506.9 593 57.2
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 1.4e-108 397.9 669 45.3
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 1.0e-82 312.0 465 54.6
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 2.2e-61 241.1 691 37.3
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 6.2e-56 223.0 255 46.7
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 4.0e-55 220.3 252 47.2
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 5.8e-54 216.5 251 46.6
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 1.3e-53 215.3 321 43.0
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 1.9e-52 211.5 331 40.2
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 2.4e-52 211.1 321 42.1
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 3.2e-52 210.7 324 41.4
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 3.2e-52 210.7 262 46.2
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 4.1e-52 210.3 245 46.1
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 4.1e-52 210.3 277 44.8
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 9.2e-52 209.1 321 41.1
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 9.2e-52 209.1 321 41.1
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 1.2e-51 208.8 279 44.1
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 1.2e-51 208.8 269 44.6
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.6e-51 208.4 284 44.4
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 6.0e-51 206.5 312 42.0
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 6.0e-51 206.5 256 44.5
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 6.0e-51 206.5 273 44.7
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 7.8e-51 206.1 239 46.0
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 3.0e-50 204.1 260 44.2
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 3.9e-50 203.8 281 43.8
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 5.1e-50 203.4 333 41.1
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 5.1e-50 203.4 333 41.1
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 5.1e-50 203.4 337 40.7
A09p12310 Brassica napus HOM05D003999 ORTHO05D005219 8.6e-50 202.6 286 54.9
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 1.1e-49 202.2 249 45.0
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.9e-49 201.4 255 43.5
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 4.3e-49 200.3 277 45.1
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 4.3e-49 200.3 345 39.4
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 5.6e-49 199.9 264 43.9
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 9.5e-49 199.1 247 45.3
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 9.5e-49 199.1 345 38.8
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.2e-48 198.7 327 39.8
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.6e-48 198.4 242 45.5
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 3.6e-48 197.2 321 38.6
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 3.6e-48 197.2 231 47.2
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 3.6e-48 197.2 230 46.1
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 4.7e-48 196.8 231 46.8
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 6.2e-48 196.4 245 44.1
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 8.1e-48 196.1 324 39.2
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 1.1e-47 195.7 231 45.9
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.4e-47 195.3 240 41.2
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.1e-47 194.1 282 43.6
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 3.1e-47 194.1 239 44.8
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 5.2e-47 193.4 240 43.3
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 5.2e-47 193.4 314 39.2
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 6.8e-47 193.0 231 45.0
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 6.8e-47 193.0 247 41.7
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 6.8e-47 193.0 268 42.5
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 8.9e-47 192.6 228 43.9
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 1.2e-46 192.2 295 40.0
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 1.5e-46 191.8 231 44.6
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 2.6e-46 191.0 237 44.3
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 3.4e-46 190.7 227 44.5
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 4.4e-46 190.3 332 36.1
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 5.8e-46 189.9 321 38.9
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 5.8e-46 189.9 252 41.7
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 5.8e-46 189.9 247 44.1
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 7.6e-46 189.5 234 43.6
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 1.7e-45 188.3 330 37.9
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 8.4e-45 186.0 319 36.4
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.1e-44 185.7 327 37.9
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.4e-44 185.3 301 39.5
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 1.9e-44 184.9 226 42.5
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 2.4e-44 184.5 270 41.1
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 3.2e-44 184.1 332 37.0
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 5.4e-44 183.3 216 45.4
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 1.2e-43 182.2 299 39.8
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 1.2e-43 182.2 228 41.7
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 2.7e-43 181.0 318 38.4
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 2.7e-43 181.0 250 38.4
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 3.5e-43 180.6 270 38.9
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.3e-42 178.7 272 40.1
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 2.3e-42 177.9 243 41.2
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 2.3e-42 177.9 321 37.4
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.3e-42 177.9 321 37.4
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 5.1e-42 176.8 232 39.2
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 6.6e-42 176.4 281 39.5
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 1.1e-41 175.6 239 42.7
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 5.6e-41 173.3 300 39.7
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 5.6e-41 173.3 230 42.6
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 7.3e-41 172.9 210 43.8
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 7.3e-41 172.9 243 42.8
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 7.3e-41 172.9 233 41.6
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 2.1e-40 171.4 227 41.9
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 3.6e-40 170.6 238 41.2
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 4.7e-40 170.2 272 37.9
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 6.2e-40 169.9 227 42.3
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 1.1e-39 169.1 327 37.0
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 2.4e-39 167.9 210 43.3
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 5.2e-39 166.8 221 40.7
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 6.8e-39 166.4 156 55.1
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 2.6e-38 164.5 268 36.6
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 2.9e-37 161.0 244 35.2
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 3.8e-37 160.6 245 38.8
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 3.8e-37 160.6 223 40.8
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 1.1e-36 159.1 197 43.1
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 1.6e-35 155.2 273 38.5
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.5e-35 154.1 191 43.5
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 2.3e-34 151.4 256 37.9
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 8.7e-34 149.4 208 41.3
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 1.5e-33 148.7 208 41.3
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.5e-33 148.7 309 33.7
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 2.1e-32 144.8 138 47.8
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 4.8e-32 143.7 261 35.2
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 1.8e-31 141.7 253 37.2
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 6.9e-31 139.8 307 33.6
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 1.7e-29 135.2 269 34.9
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 6.0e-27 126.7 76 77.6
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 1.7e-26 125.2 254 29.9
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 1.5e-25 122.1 198 38.9
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 4.3e-25 120.6 117 53.8
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 5.6e-25 120.2 222 40.5
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 2.1e-24 118.2 116 51.7
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 4.8e-24 117.1 233 32.6
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 9.0e-23 112.8 187 36.9
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 4.9e-21 107.1 181 34.3
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 8.4e-21 106.3 97 60.8
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 8.7e-18 96.3 203 33.0
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 8.7e-18 96.3 74 55.4
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 3.7e-16 90.9 178 33.7
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 4.8e-16 90.5 201 29.9
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 3.1e-15 87.8 63 61.9
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 4.2e-12 77.4 138 35.5
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 1.2e-11 75.9 120 39.2
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 2.1e-11 75.1 125 38.4
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.3e-10 72.4 165 33.3
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 1.3e-10 72.4 165 32.1
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 3.9e-10 70.9 121 33.1
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 6.7e-10 70.1 110 34.5
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 8.7e-10 69.7 116 32.8
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.8e-08 64.7 107 32.7
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 4.8e-08 63.9 111 30.6
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.8e-08 63.9 111 30.6
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 5.9e-06 57.0 113 33.6
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 5.9e-06 57.0 150 28.7


User provided reference genes

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