Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 2.8e-160 568.5 289 100.0
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 2.8e-160 568.5 289 100.0
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 1.9e-148 529.3 271 99.3
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 1.2e-145 520.0 271 97.0
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 4.7e-131 471.5 271 92.6
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 1.0e-117 427.2 277 83.8
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 3.4e-113 412.1 283 80.6
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 2.1e-110 402.9 289 76.5
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 8.1e-107 391.0 286 74.5
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 9.3e-103 377.5 284 72.5
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 7.9e-102 374.4 282 72.3
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 7.4e-100 367.9 286 69.9
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 9.7e-84 314.3 290 63.4
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 1.0e-77 294.3 288 58.0
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 3.9e-77 292.4 326 54.9
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 5.7e-76 288.5 305 56.1
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 5.7e-76 288.5 321 54.8
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 8.2e-75 284.6 300 55.0
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 2.4e-74 283.1 310 53.2
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 5.3e-74 282.0 308 53.6
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 1.5e-73 280.4 302 54.3
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 2.0e-73 280.0 324 52.8
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 3.5e-73 279.3 283 54.1
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 1.0e-72 277.7 323 51.4
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 1.3e-72 277.3 311 52.4
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 1.7e-72 276.9 313 52.1
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 1.7e-72 276.9 330 51.8
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 2.2e-72 276.6 326 51.5
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 2.9e-72 276.2 326 50.3
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 2.9e-72 276.2 314 52.2
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 2.9e-72 276.2 329 51.1
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 3.8e-72 275.8 325 52.9
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 3.8e-72 275.8 323 51.1
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 5.0e-72 275.4 325 52.0
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 5.0e-72 275.4 273 56.4
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 5.0e-72 275.4 310 53.2
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 6.5e-72 275.0 322 50.6
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 1.1e-71 274.2 296 55.1
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.4e-71 273.9 314 51.6
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 2.5e-71 273.1 310 51.6
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 3.2e-71 272.7 312 51.9
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 3.2e-71 272.7 306 51.0
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 3.2e-71 272.7 306 51.0
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 4.2e-71 272.3 312 53.8
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 7.2e-71 271.6 312 53.8
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 1.2e-70 270.8 316 51.6
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.6e-70 270.4 306 51.3
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 3.6e-70 269.2 321 49.5
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 3.6e-70 269.2 308 52.3
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 4.7e-70 268.9 320 49.7
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 6.1e-70 268.5 308 51.6
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 6.1e-70 268.5 321 49.5
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 1.4e-69 267.3 316 50.6
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 1.4e-69 267.3 316 52.5
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 1.4e-69 267.3 289 52.9
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 1.4e-69 267.3 321 49.2
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 1.4e-69 267.3 320 50.9
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 1.8e-69 266.9 319 52.0
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 1.8e-69 266.9 315 50.8
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 3.0e-69 266.2 313 51.8
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 3.0e-69 266.2 308 51.3
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 5.2e-69 265.4 312 50.6
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 8.8e-69 264.6 318 50.0
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.1e-68 264.2 318 49.4
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 1.5e-68 263.8 312 49.4
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 2.6e-68 263.1 309 49.8
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 4.4e-68 262.3 328 49.4
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 4.4e-68 262.3 329 50.2
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 5.7e-68 261.9 307 51.1
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 1.3e-67 260.8 326 49.1
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 1.3e-67 260.8 309 52.1
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 1.7e-67 260.4 308 51.0
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 2.2e-67 260.0 306 51.0
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 2.4e-66 256.5 333 49.2
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 9.1e-66 254.6 313 48.6
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 2.2e-64 250.0 305 50.2
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 1.5e-63 247.3 315 48.3
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 3.2e-63 246.1 325 49.2
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 3.2e-63 246.1 325 49.2
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 1.6e-62 243.8 302 49.0
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 2.7e-62 243.0 319 48.6
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 2.7e-62 243.0 304 47.7
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 4.7e-62 242.3 326 47.9
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 1.5e-60 237.3 330 47.0
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 2.0e-60 236.9 321 46.7
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 4.4e-60 235.7 294 46.9
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 6.3e-59 231.9 317 48.6
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 7.0e-58 228.4 305 49.2
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 7.0e-58 228.4 302 47.7
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 1.1e-55 221.1 307 46.3
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 2.5e-55 219.9 325 47.1
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 1.6e-54 217.2 328 44.5
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 1.6e-54 217.2 327 44.0
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 4.7e-54 215.7 311 46.3
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 8.0e-54 214.9 306 44.8
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 1.2e-52 211.1 293 47.4
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 9.8e-52 208.0 145 67.6
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 9.8e-52 208.0 364 41.8
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 2.8e-51 206.5 158 63.3
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 2.8e-51 206.5 309 44.0
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 2.4e-50 203.4 401 36.9
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 3.1e-50 203.0 292 43.5
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 5.7e-44 182.2 286 39.5
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 5.7e-44 182.2 324 37.7
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 1.2e-41 174.5 201 48.3
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 2.5e-39 166.8 281 35.9
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 2.8e-38 163.3 191 47.6
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 1.8e-37 160.6 160 50.6
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 1.8e-37 160.6 137 56.9
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 6.8e-37 158.7 190 45.3
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 2.6e-36 156.8 271 41.0
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 1.5e-28 131.0 295 38.3
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 6.4e-27 125.6 129 47.3
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 5.4e-26 122.5 306 34.0
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 4.6e-25 119.4 141 44.7
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 1.5e-20 104.4 138 42.0
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 4.1e-18 96.3 71 60.6
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 2.7e-17 93.6 71 57.7
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 2.3e-16 90.5 262 32.4
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.1e-15 88.2 200 34.5
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 2.8e-14 83.6 202 35.1
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 8.9e-13 78.6 189 33.9
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 5.8e-12 75.9 180 34.4
Os01g0583300 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D300111 6.6e-08 62.4 41 70.7
GSVIVG01008148001 Vitis vinifera HOM05D006355 ORTHO05D000948 8.1e-06 55.5 65 47.7


User provided reference genes

Program Settings