Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 2.7e-71 271.9 141 100.0
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 2.7e-71 271.9 141 100.0
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 2.7e-71 271.9 141 100.0
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 2.3e-70 268.9 141 98.6
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 2.3e-70 268.9 141 98.6
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 3.9e-70 268.1 141 97.9
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 9.6e-69 263.5 142 97.2
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 9.6e-69 263.5 142 97.2
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 2.8e-68 261.9 142 96.5
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 2.8e-68 261.9 142 96.5
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 2.8e-68 261.9 142 97.2
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 1.8e-67 259.2 142 96.5
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 1.8e-67 259.2 142 96.5
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 8.9e-67 256.9 141 93.6
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 1.2e-66 256.5 141 93.6
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.5e-66 256.1 141 92.9
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 2.0e-66 255.8 142 93.7
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 2.0e-66 255.8 142 93.0
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 7.6e-66 253.8 141 94.3
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 7.6e-66 253.8 141 94.3
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 7.6e-66 253.8 141 94.3
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 7.6e-66 253.8 141 94.3
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 7.6e-66 253.8 141 94.3
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 2.7e-63 245.4 142 89.4
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 7.8e-63 243.8 133 93.2
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.1e-56 220.7 141 80.9
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 2.1e-55 219.2 141 81.6
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.7e-55 218.8 141 80.1
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.7e-55 218.8 141 80.1
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 1.0e-54 216.9 141 78.0
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.8e-54 216.1 139 79.1
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 1.8e-54 216.1 139 79.1
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 3.9e-54 214.9 141 77.3
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 3.9e-54 214.9 141 76.6
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 3.9e-54 214.9 142 76.1
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.1e-53 213.4 139 76.3
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.5e-53 213.0 139 78.4
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 1.9e-53 212.6 142 78.9
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 4.3e-53 211.5 141 80.1
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 4.3e-53 211.5 142 75.4
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 7.4e-53 210.7 141 77.3
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 9.6e-53 210.3 141 77.3
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 1.3e-52 209.9 141 79.4
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 1.6e-52 209.5 141 78.7
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 78.7
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.8e-52 208.8 141 78.7
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 6.2e-52 207.6 141 75.2
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 6.2e-52 207.6 141 75.9
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 6.2e-52 207.6 139 76.3
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 78.0
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 1.4e-51 206.5 136 77.9
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.8e-51 206.1 142 75.4
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 1.8e-51 206.1 141 77.3
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 1.8e-51 206.1 141 77.3
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 2.4e-51 205.7 139 74.1
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 3.1e-51 205.3 141 73.8
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.0e-51 204.9 142 74.6
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 4.0e-51 204.9 141 76.6
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 4.0e-51 204.9 141 75.2
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 5.3e-51 204.5 141 76.6
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 6.9e-51 204.1 139 74.8
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.9e-51 204.1 141 78.0
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 9.0e-51 203.8 139 77.0
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 9.0e-51 203.8 139 72.7
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 71.6
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 78.0
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.6e-50 202.2 142 73.2
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 2.6e-50 202.2 139 74.8
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 75.2
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 75.2
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 76.6
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 5.8e-50 201.1 138 73.9
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 7.6e-50 200.7 141 73.0
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 1.3e-49 199.9 135 74.8
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 1.7e-49 199.5 141 73.0
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.7e-49 199.5 141 71.6
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 2.2e-49 199.1 140 72.9
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 2.9e-49 198.7 141 75.2
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 2.9e-49 198.7 141 74.5
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 3.8e-49 198.4 143 73.4
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 4.9e-49 198.0 141 73.8
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 8.4e-49 197.2 141 70.2
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 8.4e-49 197.2 139 71.2
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 8.4e-49 197.2 141 73.8
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 8.4e-49 197.2 141 73.0
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.4e-48 196.4 141 73.0
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.9e-48 196.1 140 73.6
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 3.2e-48 195.3 141 71.6
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 3.2e-48 195.3 141 72.3
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 4.2e-48 194.9 140 73.6
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 5.5e-48 194.5 142 73.2
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 5.5e-48 194.5 141 75.2
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 5.5e-48 194.5 141 72.3
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 9.3e-48 193.7 145 73.1
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 9.3e-48 193.7 143 73.4
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 1.6e-47 193.0 141 73.0
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 73.8
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 70.9
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 7.9e-47 190.7 141 71.6
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 7.9e-47 190.7 142 73.2
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 7.9e-47 190.7 141 74.5
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 2.3e-46 189.1 139 73.4
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.9e-46 188.3 139 72.7
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.1e-46 188.0 144 69.4
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 6.7e-46 187.6 139 71.9
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 6.7e-46 187.6 143 71.3
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 8.7e-46 187.2 137 74.5
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 1.1e-45 186.8 141 73.0
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 1.5e-45 186.4 142 69.0
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 2.5e-45 185.7 157 69.4
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.5e-45 185.7 139 70.5
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.5e-45 185.7 139 70.5
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 5.6e-45 184.5 142 72.5
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 7.4e-45 184.1 142 69.0
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 7.4e-45 184.1 138 70.3
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 9.6e-45 183.7 143 72.0
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 1.3e-44 183.3 139 69.8
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 1.3e-44 183.3 144 66.7
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.6e-44 183.0 139 71.2
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.6e-44 183.0 135 71.9
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 8.1e-44 180.6 141 69.5
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.4e-43 179.1 140 67.9
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 2.6e-42 175.6 143 65.7
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 2.6e-42 175.6 143 65.7
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.6e-42 175.6 139 66.2
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 3.4e-42 175.3 142 68.3
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 4.5e-42 174.9 139 66.9
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 1.3e-41 173.3 142 70.4
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.2e-41 172.6 141 68.1
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.4e-40 169.9 141 66.7
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 2.1e-39 166.0 141 63.1
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 2.7e-39 165.6 142 65.5
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.8e-38 162.9 139 62.6
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.8e-38 162.9 137 63.5
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 8.7e-38 160.6 139 64.0
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.9e-37 159.5 111 72.1
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 4.3e-37 158.3 155 60.6
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 7.4e-37 157.5 159 59.1
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 6.3e-36 154.5 142 61.3
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 1.1e-35 153.7 91 84.6
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 4.1e-35 151.8 140 60.7
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 1.0e-33 147.1 88 81.8
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.3e-33 146.7 140 58.6
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 2.5e-32 142.5 119 58.0
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.2e-32 142.1 114 66.7
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.1e-31 139.4 145 54.5
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 3.6e-31 138.7 120 59.2
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.1e-29 133.7 141 55.3
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.5e-29 133.3 91 79.1
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.9e-29 132.9 119 59.7
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 4.3e-29 131.7 145 55.9
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 7.4e-29 131.0 141 53.2
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.6e-28 129.8 142 54.2
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.3e-28 127.9 118 56.8
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 2.4e-27 125.9 91 71.4
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.9e-27 124.4 142 50.0
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.6e-26 122.5 139 52.5
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 8.8e-22 107.5 88 55.7
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.5e-21 106.7 91 62.6
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 4.1e-19 98.6 67 67.2
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 4.5e-18 95.1 141 45.4
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 7.7e-18 94.4 53 83.0
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 7.7e-18 94.4 135 45.2
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 6.1e-15 84.7 81 59.3
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 2.2e-12 76.3 87 57.5
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.6e-07 60.1 135 37.8


User provided reference genes

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