Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g47392 Brassica carinata HOM05D002704 ORTHO05D002891 4.0e-122 441.4 221 100.0
C06p52120 Brassica napus HOM05D002704 ORTHO05D002891 4.0e-122 441.4 221 100.0
BolC6t40235H Brassica oleracea HOM05D002704 ORTHO05D002891 4.0e-122 441.4 221 100.0
A07p27670 Brassica napus HOM05D002704 ORTHO05D002891 1.0e-96 357.1 227 80.2
Sp5g33290 Schrenkiella parvula HOM05D002704 ORTHO05D002891 1.7e-96 356.3 227 81.1
BcaB03g15984 Brassica carinata HOM05D002704 ORTHO05D002891 6.7e-93 344.4 231 79.7
BraA07t30408Z Brassica rapa HOM05D002704 ORTHO05D002891 3.7e-91 338.6 227 77.5
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 4.1e-90 335.1 228 75.9
CARHR071630 Cardamine hirsuta HOM05D002704 ORTHO05D002891 1.6e-86 323.2 230 76.5
AT1G78170 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 4.6e-86 321.6 226 76.5
AL2G38480 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.8e-85 319.7 227 77.1
A07p43470 Brassica napus HOM05D002704 ORTHO05D002891 1.5e-84 316.6 222 76.6
BraA07t31860Z Brassica rapa HOM05D002704 ORTHO05D002891 1.5e-84 316.6 222 76.6
BcaB05g25124 Brassica carinata HOM05D002704 ORTHO05D002891 3.7e-83 312.0 228 74.1
BcaC08g45431 Brassica carinata HOM05D002704 ORTHO05D002891 2.0e-81 306.2 246 67.5
C06p30640 Brassica napus HOM05D002704 ORTHO05D002891 2.0e-81 306.2 246 67.5
BolC6t38228H Brassica oleracea HOM05D002704 ORTHO05D002891 2.0e-81 306.2 246 67.5
BcaB02g07152 Brassica carinata HOM05D002704 ORTHO05D002891 1.7e-80 303.1 235 68.5
BraA02t07210Z Brassica rapa HOM05D002704 ORTHO05D002891 1.4e-79 300.1 227 71.8
BolC2t09563H Brassica oleracea HOM05D002704 ORTHO05D002891 1.1e-74 283.9 221 71.5
A02p22080 Brassica napus HOM05D002704 ORTHO05D002891 6.9e-74 281.2 224 69.2
Carub.0002s2506 Capsella rubella HOM05D002704 ORTHO05D002891 1.7e-72 276.6 225 68.4
Aa31LG4G8210 Aethionema arabicum HOM05D002704 ORTHO05D002891 1.5e-52 210.3 218 59.2
THA.LOC104800151 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 1.3e-48 197.2 231 54.5
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 5.0e-48 195.3 232 51.7
Aa31LG7G6190 Aethionema arabicum HOM05D002704 ORTHO05D002891 1.2e-46 190.7 232 53.4
A09p42520 Brassica napus HOM05D002704 ORTHO05D002891 4.4e-44 182.2 228 53.1
BraA09t39728Z Brassica rapa HOM05D002704 ORTHO05D002891 4.4e-44 182.2 228 53.1
BcaB02g07151 Brassica carinata HOM05D002704 ORTHO05D002891 6.3e-43 178.3 171 58.5
Sp1g19760 Schrenkiella parvula HOM05D002704 ORTHO05D002891 7.0e-42 174.9 208 53.8
A01p24680 Brassica napus HOM05D002704 ORTHO05D002891 1.2e-41 174.1 135 69.6
BraA01t02380Z Brassica rapa HOM05D002704 ORTHO05D002891 1.2e-41 174.1 135 69.6
Thhalv10008815m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.7e-40 170.2 226 50.4
AT1G22250 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 5.6e-39 165.2 226 48.7
BcaC06g34946 Brassica carinata HOM05D002704 ORTHO05D002891 9.5e-39 164.5 227 50.7
C07p21480 Brassica napus HOM05D002704 ORTHO05D002891 9.5e-39 164.5 227 50.7
BolC7t42674H Brassica oleracea HOM05D002704 ORTHO05D002891 9.5e-39 164.5 227 50.7
A07p14590 Brassica napus HOM05D002704 ORTHO05D002891 2.1e-38 163.3 227 50.2
BraA07t29205Z Brassica rapa HOM05D002704 ORTHO05D002891 2.8e-38 162.9 227 49.8
BcaB03g14224 Brassica carinata HOM05D002704 ORTHO05D002891 8.0e-38 161.4 225 48.4
BolC5t30835H Brassica oleracea HOM05D002704 ORTHO05D002891 4.4e-36 155.6 223 49.3
C05p21380 Brassica napus HOM05D002704 ORTHO05D002891 7.5e-36 154.8 208 51.4
Carub.0001s2180 Capsella rubella HOM05D002704 ORTHO05D002891 1.7e-35 153.7 229 46.7
BcaB03g14223 Brassica carinata HOM05D002704 ORTHO05D002891 1.8e-34 150.2 213 48.4
BcaC05g26153 Brassica carinata HOM05D002704 ORTHO05D002891 3.5e-33 146.0 208 49.5
BcaB07g32247 Brassica carinata HOM05D002704 ORTHO05D002891 3.3e-31 139.4 226 46.9
AL1G35710 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 6.2e-30 135.2 210 47.6
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 3.1e-29 132.9 217 44.2
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 5.2e-29 132.1 217 43.8
CARHR022620 Cardamine hirsuta HOM05D002704 ORTHO05D002891 3.4e-28 129.4 148 56.1
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 4.4e-28 129.0 217 43.8
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 9.2e-26 121.3 218 40.8
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 2.0e-25 120.2 217 41.9
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 1.7e-24 117.1 220 43.2
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 1.7e-24 117.1 218 42.2
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 5.0e-24 115.5 218 40.8
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 1.6e-22 110.5 216 38.4
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 6.2e-22 108.6 193 40.4
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 8.1e-22 108.2 244 36.9
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 1.4e-21 107.5 221 38.9
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 1.8e-21 107.1 220 40.0
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 2.3e-21 106.7 197 38.6
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 2.3e-21 106.7 234 38.5
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 7.5e-20 101.7 205 36.6
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 3.7e-19 99.4 181 42.0
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 6.4e-19 98.6 216 38.0
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 1.1e-18 97.8 189 37.0
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 1.9e-18 97.1 221 35.7
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.4e-18 96.7 220 36.8
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 4.1e-18 95.9 221 38.9
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 4.1e-18 95.9 216 37.0
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 9.2e-18 94.7 215 38.1
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 2.1e-17 93.6 221 37.6
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 4.6e-17 92.4 214 36.4
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 6.0e-17 92.0 145 42.1
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 6.0e-17 92.0 226 36.7
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 7.8e-17 91.7 220 38.6
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.0e-16 91.3 152 43.4
Glyma.14G172800 Glycine max HOM05D002704 ORTHO05D002891 2.3e-16 90.1 220 35.0
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 2.3e-16 90.1 203 36.0
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 3.0e-16 89.7 222 35.6
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 3.0e-16 89.7 214 35.5
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 5.1e-16 89.0 138 41.3
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 6.6e-16 88.6 163 38.7
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 8.6e-16 88.2 221 36.2
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.1e-15 87.8 216 35.2
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 2.5e-15 86.7 229 35.4
AT4G08910 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 3.3e-15 86.3 124 45.2
Carub.0006s2748 Capsella rubella HOM05D002704 ORTHO05D002891 5.6e-15 85.5 127 44.1
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 5.6e-15 85.5 200 37.0
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 5.6e-15 85.5 198 36.9
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 7.3e-15 85.1 203 35.5
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 7.3e-15 85.1 212 35.4
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 1.2e-14 84.3 73 58.9
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 1.2e-14 84.3 218 35.3
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 1.6e-14 84.0 214 35.0
AL6G41650 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 2.1e-14 83.6 159 37.1
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 2.1e-14 83.6 208 34.1
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 2.1e-14 83.6 220 33.6
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.1e-14 83.6 209 38.8
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 2.8e-14 83.2 204 34.8
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 3.6e-14 82.8 230 35.7
Nitab4.5_0002098g0040 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.6e-14 82.8 187 35.3
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 3.6e-14 82.8 200 36.0
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 3.6e-14 82.8 220 35.9
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 3.6e-14 82.8 216 36.1
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 4.7e-14 82.4 219 34.2
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 6.2e-14 82.0 188 35.1
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 8.1e-14 81.6 233 35.2
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 8.1e-14 81.6 207 34.8
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 8.1e-14 81.6 225 34.7
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 8.1e-14 81.6 127 40.9
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea HOM05D002704 ORTHO05D002891 1.1e-13 81.3 204 34.8
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 1.1e-13 81.3 234 35.0
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.4e-13 80.9 233 35.6
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.8e-13 80.5 90 48.9
CiPaw.07G180300 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.8e-13 80.5 203 34.0
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 1.8e-13 80.5 208 35.6
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 1.8e-13 80.5 225 34.2
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 2.3e-13 80.1 147 40.8
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 2.3e-13 80.1 235 33.6
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 3.1e-13 79.7 118 44.1
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 3.1e-13 79.7 233 35.2
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 3.1e-13 79.7 237 33.8
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 3.1e-13 79.7 170 36.5
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 3.1e-13 79.7 219 32.4
unitig_578.g16200 Utricularia gibba HOM05D002704 ORTHO05D002891 4.0e-13 79.3 125 44.8
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 5.2e-13 79.0 189 36.5
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea HOM05D002704 ORTHO05D002891 6.8e-13 78.6 63 58.7
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 8.9e-13 78.2 179 36.3
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 8.9e-13 78.2 226 36.3
CARHR259930 Cardamine hirsuta HOM05D002704 ORTHO05D002891 1.2e-12 77.8 126 41.3
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 1.2e-12 77.8 198 35.9
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 1.5e-12 77.4 185 36.2
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 1.5e-12 77.4 209 32.1
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.0e-12 77.0 214 36.0
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 2.0e-12 77.0 201 33.8
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 2.6e-12 76.6 171 38.0
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 2.6e-12 76.6 177 35.0
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 2.6e-12 76.6 231 34.2
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 3.4e-12 76.3 212 34.0
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 3.4e-12 76.3 156 34.0
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 4.4e-12 75.9 233 34.8
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 5.8e-12 75.5 213 33.3
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 5.8e-12 75.5 215 36.3
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 5.8e-12 75.5 125 43.2
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.7e-11 73.9 214 33.2
Thhalv10028969m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 2.2e-11 73.6 127 40.2
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 2.2e-11 73.6 213 33.8
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 2.2e-11 73.6 213 30.5
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 3.8e-11 72.8 193 35.8
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 8.4e-11 71.6 177 35.6
Sp6g08890 Schrenkiella parvula HOM05D002704 ORTHO05D002891 8.4e-11 71.6 117 38.5
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.9e-10 70.5 180 33.9
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.9e-10 70.5 129 38.0
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 2.4e-10 70.1 48 62.5
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 3.2e-10 69.7 125 35.2
unitig_578.g16524 Utricularia gibba HOM05D002704 ORTHO05D002891 3.2e-10 69.7 137 38.0
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 4.1e-10 69.3 150 36.7
THA.LOC104816761 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 4.1e-10 69.3 138 37.7
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 4.1e-10 69.3 65 55.4
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 5.4e-10 68.9 194 33.0
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 5.4e-10 68.9 143 35.7
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.6e-09 67.4 193 31.6
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 1.6e-09 67.4 167 34.7
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea HOM05D002704 ORTHO05D002891 2.1e-09 67.0 190 33.7
Migut.N02898 Erythranthe guttata HOM05D002704 ORTHO05D002891 3.5e-09 66.2 94 42.6
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 7.8e-09 65.1 232 31.0
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 1.7e-08 63.9 174 30.5
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 2.3e-08 63.5 177 30.5
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 8.6e-08 61.6 236 27.5
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 1.1e-07 61.2 235 32.8
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 1.1e-07 61.2 115 36.5
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.5e-07 60.1 54 44.4
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.5e-07 60.1 54 44.4
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 2.5e-07 60.1 43 55.8
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 2.5e-07 60.1 51 49.0
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 5.6e-07 58.9 106 36.8
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 5.6e-07 58.9 112 30.4
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 9.6e-07 58.2 160 29.4
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 2.8e-06 56.6 229 29.3
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 3.6e-06 56.2 183 29.5
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 3.6e-06 56.2 222 27.9
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 6.2e-06 55.5 58 41.4
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 6.2e-06 55.5 58 46.6


User provided reference genes

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