Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 0.0e+00 1802.7 959 100.0
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 0.0e+00 1580.8 837 96.2
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 0.0e+00 1517.3 836 92.9
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 0.0e+00 1515.0 845 92.0
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 0.0e+00 1436.0 845 87.5
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 0.0e+00 1346.3 836 83.0
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 0.0e+00 1317.0 842 81.6
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 0.0e+00 1290.8 707 93.9
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 0.0e+00 1286.2 853 78.1
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 0.0e+00 1230.3 822 79.9
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 2.9e-310 1068.5 773 72.2
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 5.5e-285 984.6 673 77.6
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 1.2e-282 976.9 605 82.6
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 1.8e-272 943.0 851 60.2
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 1.1e-264 917.1 757 69.4
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 4.6e-263 911.8 775 59.6
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 4.7e-252 875.2 772 57.9
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 5.4e-248 861.7 786 57.3
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 7.8e-247 857.8 509 88.0
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 6.6e-246 854.7 769 58.0
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 5.2e-243 845.1 754 58.0
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 5.2e-243 845.1 773 57.1
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 6.4e-241 838.2 772 56.0
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 8.6e-238 827.8 762 55.5
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 6.4e-233 811.6 755 54.7
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 2.7e-231 806.2 761 54.9
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 7.3e-229 798.1 758 55.8
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.3e-228 797.3 780 53.5
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 8.1e-228 794.7 800 52.6
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 2.2e-225 786.6 828 52.3
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 6.0e-223 778.5 765 53.7
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 1.3e-222 777.3 772 53.0
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.9e-221 773.5 784 53.7
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 5.3e-219 765.4 805 52.0
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 1.2e-218 764.2 750 54.3
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 1.2e-218 764.2 751 54.2
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 4.9e-217 758.8 774 53.6
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 2.4e-216 756.5 770 52.5
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 7.1e-216 755.0 821 50.8
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 4.6e-215 752.3 758 53.2
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 7.9e-215 751.5 759 52.8
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 1.0e-214 751.1 894 47.8
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 2.3e-214 750.0 776 50.0
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 3.0e-214 749.6 760 52.5
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 4.8e-212 742.3 774 51.0
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 4.8e-212 742.3 788 50.5
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 8.1e-212 741.5 777 51.6
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 1.8e-211 740.3 772 50.8
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 3.4e-210 736.1 759 52.8
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 4.2e-208 729.2 775 50.8
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 5.5e-208 728.8 857 48.2
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 2.7e-207 726.5 789 50.1
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 1.0e-206 724.5 787 50.2
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 2.3e-206 723.4 757 51.0
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 8.7e-206 721.5 765 51.5
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 7.4e-205 718.4 776 51.8
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 9.6e-205 718.0 756 52.4
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 1.1e-203 714.5 785 49.7
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 1.1e-203 714.5 774 51.6
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 7.2e-200 701.8 767 49.8
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.2e-199 701.0 774 50.6
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 1.5e-197 694.1 772 49.6
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 1.4e-195 687.6 805 47.0
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 4.5e-194 682.6 746 48.7
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 2.3e-190 670.2 753 48.1
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 8.8e-190 668.3 735 48.2
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 8.8e-190 668.3 780 47.2
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 7.4e-189 665.2 771 46.2
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 9.7e-189 664.8 724 50.0
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 1.3e-188 664.5 777 47.5
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 1.3e-188 664.5 777 47.5
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 4.5e-186 656.0 845 43.7
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 5.9e-186 655.6 719 49.8
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 1.0e-185 654.8 753 47.0
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 1.4e-184 651.0 845 44.4
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 5.5e-184 649.0 754 46.0
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 7.9e-183 645.2 603 56.6
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 6.7e-182 642.1 778 46.1
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 6.3e-180 635.6 772 45.9
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 7.0e-179 632.1 756 47.9
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 1.5e-176 624.4 813 44.2
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 5.5e-176 622.5 769 46.8
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 9.4e-176 621.7 807 44.4
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 3.6e-175 619.8 771 43.2
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 2.2e-172 610.5 833 42.3
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 9.1e-171 605.1 768 44.7
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 5.9e-170 602.4 640 52.5
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 2.3e-166 590.5 806 43.7
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 5.9e-162 575.9 540 55.9
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 2.2e-161 573.9 817 41.6
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 8.5e-161 572.0 756 42.9
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 1.8e-158 564.3 614 50.7
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 1.7e-156 557.8 628 48.4
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 4.3e-144 516.5 603 46.9
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 4.9e-140 503.1 790 37.1
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 3.6e-135 486.9 270 91.1
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 2.6e-125 454.1 618 42.4
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 3.2e-123 447.2 543 45.5
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 5.2e-118 429.9 544 43.4
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 5.6e-104 383.3 356 55.6
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 2.7e-66 258.1 334 44.3
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 3.3e-64 251.1 374 41.7
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 5.9e-61 240.4 119 98.3
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 7.7e-61 240.0 547 32.7
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 1.7e-55 222.2 215 52.1
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 3.4e-48 198.0 170 60.6
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 3.5e-45 188.0 756 24.3
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 2.8e-39 168.3 644 23.4
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 3.1e-38 164.9 166 52.4
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 4.5e-37 161.0 599 23.4
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 1.9e-35 155.6 447 26.8
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 1.9e-35 155.6 738 22.6
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 4.7e-34 151.0 154 50.6
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 8.9e-33 146.7 79 89.9
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 9.8e-32 143.3 144 49.3
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 9.8e-32 143.3 144 49.3
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 1.4e-25 122.9 147 46.3
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 1.4e-25 122.9 147 46.3
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 5.4e-22 110.9 118 43.2
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 7.8e-21 107.1 81 72.8
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 1.4e-14 86.3 131 39.7
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 9.2e-14 83.6 88 46.6
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 6.0e-13 80.9 87 48.3
AagrBONN_evm.TU.Sc2ySwM_228.4557 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-09 69.7 629 21.9
AagrBONN_evm.TU.Sc2ySwM_117.1086 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.0e-09 68.2 409 18.8
Atru.chr3.3954 Acer truncatum HOM05D000001 ORTHO05D010418 2.6e-08 65.5 466 20.8
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 2.6e-08 65.5 369 20.6
Actinidia36281 Actinidia chinensis HOM05D000001 ORTHO05D000003 7.6e-08 63.9 402 20.9
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 7.6e-08 63.9 390 19.5
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 9.9e-08 63.5 154 26.6
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 9.9e-08 63.5 154 26.0
Peaxi162Scf00392g00013 Petunia axillaris HOM05D000001 ORTHO05D000003 9.9e-08 63.5 405 21.0
SGA_v2.0_scaffold47G17794 Striga asiatica HOM05D000001 ORTHO05D000003 9.9e-08 63.5 367 22.1
PGR031G2661 Punica granatum HOM05D002453 ORTHO05D008746 1.7e-07 62.8 125 32.0
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 2.2e-07 62.4 386 20.5
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 2.9e-07 62.0 379 20.6
AagrBONN_evm.TU.Sc2ySwM_228.4304 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.9e-07 61.2 589 20.7
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 4.9e-07 61.2 65 44.6
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.4e-07 60.8 365 19.2
Sed0014631 Sechium edule HOM05D000001 ORTHO05D010418 8.4e-07 60.5 437 18.5
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 1.1e-06 60.1 211 22.7
Dinv43276 Davidia involucrata HOM05D006258 ORTHO05D007961 1.1e-06 60.1 256 18.8
Lsat_1_v5_gn_8_47340 Lactuca sativa HOM05D003889 ORTHO05D002785 1.1e-06 60.1 59 42.4
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 1.1e-06 60.1 379 20.3
Lsat_1_v5_gn_4_134881 Lactuca sativa HOM05D005833 ORTHO05D011576 1.4e-06 59.7 99 31.3
AagrBONN_evm.TU.Sc2ySwM_368.2803 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.9e-06 59.3 290 21.4
Cc07_g18980 Coffea canephora HOM05D000162 ORTHO05D000090 1.9e-06 59.3 86 37.2
Lsat_1_v5_gn_5_86001 Lactuca sativa HOM05D005833 ORTHO05D011576 1.9e-06 59.3 57 43.9
Aqoxy1G01656 Aquilegia oxysepala HOM05D018609 ORTHO05D019561 2.4e-06 58.9 264 21.2
Lsat_1_v5_gn_8_149561 Lactuca sativa HOM05D005833 ORTHO05D011576 2.4e-06 58.9 76 34.2
Lsat_1_v5_gn_1_129260 Lactuca sativa HOM05D005833 ORTHO05D011576 3.2e-06 58.5 57 43.9
Lsat_1_v5_gn_5_40941 Lactuca sativa HOM05D002610 ORTHO05D011576 3.2e-06 58.5 152 28.9
SalBow1G3819 Salvia bowleyana HOM05D000162 ORTHO05D000090 3.2e-06 58.5 160 24.4
SalBow8G2866 Salvia bowleyana HOM05D002453 ORTHO05D008746 3.2e-06 58.5 283 22.3
SMO137G0031 Selaginella moellendorffii HOM05D000001 ORTHO05D375163 3.2e-06 58.5 414 20.3
AagrBONN_evm.TU.Sc2ySwM_368.49 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.1e-06 58.2 482 19.1
THA.LOC104822113 Tarenaya hassleriana HOM05D000001 ORTHO05D010176 4.1e-06 58.2 271 19.2
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 5.4e-06 57.8 189 24.3
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 5.4e-06 57.8 143 24.5
Dinv35320 Davidia involucrata HOM05D000001 ORTHO05D000003 5.4e-06 57.8 283 19.4
Lsat_1_v5_gn_4_21621 Lactuca sativa HOM05D000942 ORTHO05D011576 5.4e-06 57.8 57 42.1
Lsat_1_v5_gn_7_13280 Lactuca sativa HOM05D002352 ORTHO05D000385 5.4e-06 57.8 54 44.4
PSO675G0134 Papaver somniferum HOM05D000001 ORTHO05D000003 5.4e-06 57.8 347 19.9
SalBow3G1682 Salvia bowleyana HOM05D000162 ORTHO05D000090 5.4e-06 57.8 164 23.8
CSS0023404 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 7.1e-06 57.4 387 20.4
CSS0041094 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 7.1e-06 57.4 387 20.4
CDE04G0987 Ceratophyllum demersum HOM05D000001 ORTHO05D009429 7.1e-06 57.4 137 24.1
Lsat_1_v5_gn_4_72121 Lactuca sativa HOM05D018531 ORTHO05D011576 7.1e-06 57.4 61 39.3
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 7.1e-06 57.4 200 24.5
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 7.1e-06 57.4 143 24.5
SGA_v2.0_scaffold274G46481 Striga asiatica HOM05D000162 ORTHO05D000090 7.1e-06 57.4 360 22.2
Cc07_g19010 Coffea canephora HOM05D000162 ORTHO05D000090 9.2e-06 57.0 81 37.0
Lsat_1_v5_gn_0_21360 Lactuca sativa HOM05D001049 ORTHO05D015148 9.2e-06 57.0 54 42.6
Lsat_1_v5_gn_3_55481 Lactuca sativa HOM05D002352 ORTHO05D011576 9.2e-06 57.0 54 42.6
Lsat_1_v5_gn_5_130920 Lactuca sativa HOM05D001159 ORTHO05D011576 9.2e-06 57.0 54 42.6
Manes.15G113900 Manihot esculenta HOM05D000001 ORTHO05D000003 9.2e-06 57.0 344 19.2


User provided reference genes

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