Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 1.1e-198 696.4 351 100.0
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 1.2e-197 693.0 351 96.9
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 1.2e-197 693.0 351 96.9
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 3.0e-196 688.3 351 98.6
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 4.3e-195 684.5 351 98.3
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 4.2e-190 667.9 351 91.7
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 6.7e-188 660.6 351 91.5
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 1.5e-187 659.4 351 91.2
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.5e-187 659.4 351 91.2
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 3.7e-186 654.8 351 93.4
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 2.0e-184 649.0 351 92.3
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 7.2e-182 640.6 351 89.2
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 6.1e-173 610.9 350 84.9
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 1.0e-172 610.1 318 96.5
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.8e-172 609.4 350 84.0
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.1e-171 606.7 350 83.7
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 4.4e-171 604.7 350 83.7
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 4.4e-171 604.7 350 83.7
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 7.4e-171 604.0 350 83.4
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 2.8e-170 602.1 352 82.7
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 8.2e-170 600.5 350 82.6
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 2.4e-169 599.0 349 82.8
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 7.0e-169 597.4 352 83.5
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 4.5e-160 568.2 353 75.6
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 2.9e-159 565.5 352 76.7
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 3.8e-159 565.1 352 75.9
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 2.1e-157 559.3 351 75.5
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 2.7e-157 558.9 352 75.3
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 4.7e-157 558.1 352 75.0
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 4.7e-157 558.1 352 75.0
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 1.0e-156 557.0 352 75.0
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 6.7e-156 554.3 352 75.9
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 8.8e-156 553.9 352 73.9
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 8.8e-156 553.9 351 77.2
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.5e-155 553.1 351 74.6
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 2.0e-155 552.7 352 73.6
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 5.7e-155 551.2 352 73.6
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 5.7e-155 551.2 361 73.7
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 5.7e-155 551.2 352 74.7
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 1.7e-154 549.7 351 73.2
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 3.7e-154 548.5 352 75.0
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 3.7e-154 548.5 349 76.2
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 8.3e-154 547.4 352 76.7
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 3.1e-153 545.4 339 77.0
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 9.1e-153 543.9 350 73.4
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 1.6e-152 543.1 351 74.9
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 3.5e-152 542.0 351 74.6
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 3.5e-152 542.0 351 74.6
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 7.7e-152 540.8 351 72.6
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 1.7e-151 539.7 350 72.3
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 1.7e-151 539.7 351 72.4
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 2.9e-151 538.9 354 73.4
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 3.8e-151 538.5 339 74.9
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 3.8e-151 538.5 352 72.7
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 8.5e-151 537.3 355 71.3
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 1.9e-150 536.2 351 71.8
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 3.2e-150 535.4 351 72.6
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 4.2e-150 535.0 351 72.4
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 9.4e-150 533.9 351 72.6
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 9.4e-150 533.9 352 72.2
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 6.1e-149 531.2 352 72.2
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 1.0e-148 530.4 350 72.6
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.4e-148 530.0 352 71.9
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 2.3e-148 529.3 351 70.4
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 4.0e-148 528.5 352 74.4
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 5.2e-148 528.1 350 70.9
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 1.2e-147 526.9 351 69.8
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 3.4e-147 525.4 351 70.1
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 2.2e-146 522.7 352 70.5
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 2.8e-146 522.3 351 69.2
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 2.8e-146 522.3 339 74.6
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 2.8e-146 522.3 351 70.4
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 1.4e-145 520.0 351 69.5
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.4e-145 520.0 352 70.2
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 1.8e-145 519.6 352 70.7
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 1.8e-145 519.6 351 69.5
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 2.4e-145 519.2 337 73.6
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 5.4e-145 518.1 351 68.7
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 1.2e-144 516.9 353 70.8
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 1.0e-143 513.8 339 72.0
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 3.8e-143 511.9 374 67.6
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 6.6e-143 511.1 338 69.5
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 1.5e-142 510.0 347 69.5
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 1.9e-142 509.6 337 69.4
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 2.5e-142 509.2 319 75.9
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 4.2e-142 508.4 351 70.4
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 9.5e-142 507.3 401 64.8
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 4.0e-140 501.9 294 82.3
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 4.0e-140 501.9 289 83.4
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 4.0e-140 501.9 289 83.4
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 4.4e-139 498.4 319 74.0
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 5.7e-139 498.0 352 72.4
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 6.3e-138 494.6 358 67.3
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 1.4e-137 493.4 338 70.7
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 7.8e-136 487.6 407 59.5
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.0e-131 473.0 346 69.9
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.1e-129 467.2 319 72.7
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 4.1e-129 465.3 318 68.2
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.2e-128 463.8 294 74.5
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 2.7e-128 462.6 299 76.3
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 3.5e-128 462.2 352 61.1
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 2.8e-125 452.6 352 60.2
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 6.2e-125 451.4 338 62.4
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 9.2e-121 437.6 296 74.0
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 7.3e-118 427.9 352 57.1
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 3.4e-115 419.1 322 64.3
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 4.6e-112 408.7 395 54.2
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 2.5e-110 402.9 255 74.5
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 8.1e-109 397.9 269 68.4
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 3.8e-106 389.0 271 71.6
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 2.5e-102 376.3 353 56.1
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 9.9e-99 364.4 223 77.6
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 9.0e-92 341.3 203 81.3
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.9e-90 336.3 203 78.8
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 5.3e-84 315.5 180 82.8
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 1.1e-78 297.7 351 45.3
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 8.4e-74 281.6 345 41.2
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 7.1e-73 278.5 231 55.8
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 7.9e-72 275.0 346 41.6
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 9.0e-68 261.5 158 75.9
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.1e-63 245.7 210 61.0
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 8.8e-63 245.0 199 61.8
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.9e-49 200.7 145 66.2
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 2.1e-48 197.2 364 30.8
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 7.4e-46 188.7 109 78.9
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.6e-43 181.0 125 68.8
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.7e-42 177.6 126 67.5
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 2.9e-42 176.8 87 93.1
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 2.1e-32 144.1 129 55.0
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 1.1e-28 131.7 118 56.8
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 1.3e-26 124.8 324 29.0
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 3.3e-25 120.2 72 69.4
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 4.0e-23 113.2 81 59.3
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 2.4e-20 104.0 202 33.2
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 2.4e-20 104.0 76 67.1
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 9.2e-20 102.1 69 68.1
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.7e-19 100.5 67 68.7
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.8e-14 82.8 44 81.8
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.8e-14 82.8 54 74.1
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.7e-13 81.3 48 72.9
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 1.9e-12 77.8 60 56.7
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 1.6e-11 74.7 370 23.0
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 2.0e-11 74.3 146 35.6
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 3.6e-08 63.5 42 66.7
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 4.0e-07 60.1 88 42.0
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.2e-06 58.5 46 56.5


User provided reference genes

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