Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 5.5e-87 324.3 171 100.0
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 1.2e-86 323.2 171 99.4
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 1.2e-86 323.2 171 99.4
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.0e-85 320.1 171 98.2
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 2.3e-85 318.9 171 98.2
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 7.7e-81 303.9 171 94.2
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 2.1e-70 269.2 172 85.5
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.0e-69 266.9 172 82.0
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 4.0e-69 265.0 172 80.8
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 5.2e-69 264.6 171 82.5
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.7e-67 259.6 172 80.8
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.4e-66 256.5 171 81.3
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 2.4e-66 255.8 173 80.3
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 7.0e-66 254.2 171 79.5
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 1.6e-65 253.1 171 78.9
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 2.0e-65 252.7 171 78.9
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 2.0e-65 252.7 171 78.9
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 2.0e-65 252.7 171 78.9
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 2.7e-65 252.3 171 78.4
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 2.7e-65 252.3 171 78.4
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 1.3e-64 250.0 171 77.8
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 1.3e-64 250.0 171 77.8
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 1.7e-64 249.6 172 79.1
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 1.7e-64 249.6 172 79.1
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 2.3e-64 249.2 171 77.8
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 3.0e-64 248.8 171 77.2
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 3.9e-64 248.4 174 78.2
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 3.9e-64 248.4 174 78.2
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 3.9e-64 248.4 174 78.2
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 5.0e-64 248.1 171 78.4
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 8.6e-64 247.3 171 76.0
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 1.1e-63 246.9 171 75.4
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.5e-63 246.5 173 77.5
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 5.6e-63 244.6 168 77.4
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 9.5e-63 243.8 171 75.4
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 3.6e-62 241.9 171 75.4
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.4e-61 240.0 171 71.9
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 4.4e-60 235.0 169 75.7
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 4.4e-60 235.0 171 73.7
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 3.7e-59 231.9 175 73.1
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 6.4e-59 231.1 171 71.9
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 9.2e-58 227.3 172 69.2
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 7.8e-57 224.2 172 70.9
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.7e-56 223.0 171 69.6
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 1.7e-56 223.0 171 69.0
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 2.3e-56 222.6 171 69.6
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 3.0e-56 222.2 171 69.0
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 5.1e-56 221.5 171 66.7
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 6.6e-56 221.1 173 69.9
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 6.6e-56 221.1 171 67.8
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 1.1e-55 220.3 171 67.8
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 1.1e-55 220.3 170 67.6
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 1.5e-55 219.9 171 69.0
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 1.9e-55 219.5 171 69.0
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 3.3e-55 218.8 171 68.4
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.3e-55 218.8 171 67.8
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 5.6e-55 218.0 171 66.1
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 5.6e-55 218.0 171 66.1
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 7.3e-55 217.6 172 68.0
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 9.5e-55 217.2 171 67.3
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.2e-54 216.9 171 67.8
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 1.2e-54 216.9 171 69.0
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 1.2e-54 216.9 171 67.3
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 1.6e-54 216.5 172 67.4
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 1.6e-54 216.5 171 66.1
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 1.6e-54 216.5 171 69.0
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 1.6e-54 216.5 171 66.7
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 2.1e-54 216.1 171 67.8
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.8e-54 215.7 171 67.8
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 2.8e-54 215.7 171 66.7
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 3.6e-54 215.3 171 66.7
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 8.1e-54 214.2 171 66.1
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 1.1e-53 213.8 172 65.1
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.4e-53 213.4 171 64.3
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 1.4e-53 213.4 171 67.3
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.8e-53 213.0 171 64.9
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.8e-53 213.0 171 65.5
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 2.3e-53 212.6 171 66.1
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 2.3e-53 212.6 171 64.3
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 3.1e-53 212.2 173 65.3
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 3.1e-53 212.2 172 68.0
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 4.0e-53 211.8 171 66.7
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.0e-53 211.8 171 66.1
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 4.0e-53 211.8 171 67.3
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 5.2e-53 211.5 171 65.5
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 6.8e-53 211.1 173 65.9
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 6.8e-53 211.1 171 66.1
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 8.9e-53 210.7 171 65.5
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 8.9e-53 210.7 171 63.7
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 1.2e-52 210.3 171 63.7
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.2e-52 210.3 171 64.9
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 1.5e-52 209.9 171 67.3
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 2.0e-52 209.5 173 63.6
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.0e-52 209.5 173 64.7
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 2.0e-52 209.5 171 63.2
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.4e-52 208.8 174 66.7
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 3.4e-52 208.8 171 65.5
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 3.4e-52 208.8 172 65.7
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 5.8e-52 208.0 171 62.0
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 5.8e-52 208.0 171 62.0
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 7.6e-52 207.6 163 68.1
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 1.3e-51 206.8 172 64.5
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 3.7e-51 205.3 171 64.3
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 3.7e-51 205.3 171 62.6
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 3.7e-51 205.3 173 67.1
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 3.7e-51 205.3 171 64.3
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 4.9e-51 204.9 171 62.0
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 8.3e-51 204.1 171 63.7
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 8.3e-51 204.1 171 66.1
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.1e-50 203.8 173 64.7
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 1.1e-50 203.8 171 63.2
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 1.4e-50 203.4 171 61.4
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 1.4e-50 203.4 171 64.9
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 2.4e-50 202.6 171 62.6
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 3.2e-50 202.2 169 65.1
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 7.1e-50 201.1 171 63.7
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 7.1e-50 201.1 173 61.8
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 1.6e-49 199.9 171 62.6
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 4.6e-49 198.4 167 62.3
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 6.0e-49 198.0 171 64.3
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.0e-48 197.2 157 68.2
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 2.3e-48 196.1 172 61.0
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 5.1e-48 194.9 173 61.8
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 5.1e-48 194.9 167 59.9
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 2.5e-47 192.6 164 66.5
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 4.3e-47 191.8 168 61.9
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 7.3e-47 191.0 172 61.6
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 2.1e-46 189.5 172 61.0
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 2.8e-46 189.1 171 59.1
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 8.1e-46 187.6 163 60.1
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 8.1e-46 187.6 171 60.8
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.1e-45 187.2 169 59.8
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 1.8e-45 186.4 171 57.9
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 1.8e-45 186.4 171 57.9
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 3.1e-45 185.7 154 61.0
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 4.0e-45 185.3 172 58.7
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 9.9e-44 180.6 171 56.1
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 2.4e-42 176.0 156 62.8
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 9.3e-42 174.1 150 66.0
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.2e-41 173.7 102 78.4
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.7e-40 169.9 102 76.5
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 3.9e-40 168.7 173 58.4
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 9.6e-39 164.1 155 61.9
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 1.1e-37 160.6 99 75.8
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 2.0e-36 156.4 100 71.0
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 8.4e-35 151.0 149 59.1
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 1.4e-34 150.2 170 48.8
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.9e-32 142.1 171 43.3
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 5.6e-31 138.3 171 44.4
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 1.3e-30 137.1 217 40.6
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 2.8e-30 136.0 178 46.6
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.1e-29 132.5 172 43.0
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 6.9e-29 131.3 176 41.5
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 3.4e-28 129.0 146 50.0
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 8.4e-27 124.4 146 48.6
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 7.1e-26 121.3 70 78.6
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 7.9e-25 117.9 116 52.6
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 1.8e-24 116.7 171 43.9
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.9e-24 115.5 70 74.3
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 4.8e-22 108.6 172 43.6
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.8e-19 99.0 67 70.1
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 6.5e-19 98.2 174 43.7
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 6.7e-16 88.2 67 62.7
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 6.5e-11 71.6 44 70.5


User provided reference genes

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